From a41526551a779e6155bfee9f9ef32500a1e39cfb Mon Sep 17 00:00:00 2001 From: Wolfgang Kerzendorf <wkerzendorf@gmail.com> Date: Mon, 29 Apr 2019 16:55:06 -0400 Subject: [PATCH 1/4] add changes builder to travis process --- .travis.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.travis.yml b/.travis.yml index 8487864eef6..cf227eb9146 100644 --- a/.travis.yml +++ b/.travis.yml @@ -53,6 +53,9 @@ script: - echo CC=$COMPILER python setup.py $SETUP_CMD - CC=$COMPILER python setup.py $SETUP_CMD - set -e + - conda install -y -c conda-forge nodejs + - npm install -g github-changes + - github-changes -o tardis-sn -r tardis --only-pulls --use-commit-body -f CHANGELOG.rst -k $GITHUB_CHANGES_OAUTH - python setup.py build_docs - pip install doctr - git lfs uninstall From 1d0f495b4b50ff2740c1aa05d0b4ec2b1694ce3c Mon Sep 17 00:00:00 2001 From: Wolfgang Kerzendorf <wkerzendorf@gmail.com> Date: Mon, 29 Apr 2019 17:59:41 -0400 Subject: [PATCH 2/4] add changelog more prominently. remove old tardis env --- docs/CHANGELOG.md | 1 + docs/changelog.rst | 3 --- docs/conf.py | 9 +++++++-- docs/index.rst | 2 +- tardis_env27.yml | 48 ---------------------------------------------- tardis_env3.yml | 1 + 6 files changed, 10 insertions(+), 54 deletions(-) create mode 120000 docs/CHANGELOG.md delete mode 100644 docs/changelog.rst delete mode 100644 tardis_env27.yml diff --git a/docs/CHANGELOG.md b/docs/CHANGELOG.md new file mode 120000 index 00000000000..04c99a55caa --- /dev/null +++ b/docs/CHANGELOG.md @@ -0,0 +1 @@ +../CHANGELOG.md \ No newline at end of file diff --git a/docs/changelog.rst b/docs/changelog.rst deleted file mode 100644 index 76888fe1bf1..00000000000 --- a/docs/changelog.rst +++ /dev/null @@ -1,3 +0,0 @@ -.. _changelog: - -.. include:: ../CHANGELOG.rst diff --git a/docs/conf.py b/docs/conf.py index 4eeb17d705e..6a38332ed07 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -51,10 +51,15 @@ 'numpydoc', 'nbsphinx', 'sphinx.ext.autodoc', - 'sphinx-jsonschema' + 'sphinx-jsonschema', + 'recommonmark' ] -source_suffix = '.rst' +source_suffix = { + '.rst': 'restructuredtext', +# '.txt': 'markdown', + '.md': 'markdown', +} ## get's rid of many toctree contains errors: see https://github.com/phn/pytpm/issues/3#issuecomment-12133978 numpydoc_show_class_members = False extensions += ['matplotlib.sphinxext.plot_directive', diff --git a/docs/index.rst b/docs/index.rst index d91c7b8991e..249bff518c4 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -34,6 +34,7 @@ Using Tardis :maxdepth: 2 installation + CHANGELOG.md quickstart running/index examples/index @@ -62,7 +63,6 @@ Developing Tardis issues workflow/development_workflow runnints_tests - changelog ========== References diff --git a/tardis_env27.yml b/tardis_env27.yml deleted file mode 100644 index a5e219f647a..00000000000 --- a/tardis_env27.yml +++ /dev/null @@ -1,48 +0,0 @@ -name: tardis - -channels: - - conda-forge - -dependencies: -- python=2.7 -- numpy=1.12 -- scipy=1 -- pandas=0.20 -- pytables -- h5py=2 -- matplotlib=2.0 -- astropy=1.3 -- numexpr=2.6 -- Cython=0.28.4 -- networkx=1.10 -- pytest=3.0 -- pyyaml=3.12 -- jsonschema=2.5.1 -- pyne=0.5 -- graphviz=2.38 -- pygraphviz - -# RTD requirements -- sphinx=1.5.1 -- nbconvert -- numpydoc=0.8 -- docutils=0.13.1 -- nbformat -- nbsphinx -- jupyter -#Coverage requirements -- coverage=3.7.1 -- requests=2.9.1 -- docopt=0.6.2 -- pytest-cov=2.2.1 -- codecov -#testing requirements -- git-lfs=2.4 -- pip: - - sphinx_bootstrap_theme - - sphinxcontrib-bibtex - - sphinxcontrib-tikz - - pytest-html==1.10.0 - - dokuwiki - - dot2tex - - sphinx-jsonschema diff --git a/tardis_env3.yml b/tardis_env3.yml index c757e460d5b..6095834602f 100644 --- a/tardis_env3.yml +++ b/tardis_env3.yml @@ -41,6 +41,7 @@ dependencies: - sphinx_bootstrap_theme - sphinxcontrib-bibtex - sphinx_rtd_theme +- recommonmark #Test/Coverage requirements - git-lfs From 038772449469857a39928f7cb048999473b0c04e Mon Sep 17 00:00:00 2001 From: Wolfgang Kerzendorf <wkerzendorf@gmail.com> Date: Mon, 29 Apr 2019 18:02:05 -0400 Subject: [PATCH 3/4] fix the filename for changelog --- .travis.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.travis.yml b/.travis.yml index cf227eb9146..61c059e6e49 100644 --- a/.travis.yml +++ b/.travis.yml @@ -55,7 +55,7 @@ script: - set -e - conda install -y -c conda-forge nodejs - npm install -g github-changes - - github-changes -o tardis-sn -r tardis --only-pulls --use-commit-body -f CHANGELOG.rst -k $GITHUB_CHANGES_OAUTH + - github-changes -o tardis-sn -r tardis --only-pulls --use-commit-body -f CHANGELOG.md -k $GITHUB_CHANGES_OAUTH - python setup.py build_docs - pip install doctr - git lfs uninstall From a044c55b576fc450db055af6e6fef360ddcc16e9 Mon Sep 17 00:00:00 2001 From: Wolfgang Kerzendorf <wkerzendorf@gmail.com> Date: Mon, 29 Apr 2019 18:03:04 -0400 Subject: [PATCH 4/4] add markdown changelog - remove rst changelog --- CHANGELOG.md | 432 +++++++++++++++++++++++++++ CHANGELOG.rst | 788 -------------------------------------------------- 2 files changed, 432 insertions(+), 788 deletions(-) create mode 100644 CHANGELOG.md delete mode 100644 CHANGELOG.rst diff --git a/CHANGELOG.md b/CHANGELOG.md new file mode 100644 index 00000000000..30f9620b1e9 --- /dev/null +++ b/CHANGELOG.md @@ -0,0 +1,432 @@ +## Change Log + +### upcoming (2019/04/29 20:48 +00:00) +- [#914](https://github.com/tardis-sn/tardis/pull/914) make python3 compatible (#914) (@wkerzendorf) +- [#902](https://github.com/tardis-sn/tardis/pull/902) general overhaul of the docs for 3.0 (#902) (@wkerzendorf) +- [#916](https://github.com/tardis-sn/tardis/pull/916) make python3 compatible (#916) (@wkerzendorf) +- [#915](https://github.com/tardis-sn/tardis/pull/915) Parsing STELLA files for TARDIS (#915) (@sarafina325) +- [#911](https://github.com/tardis-sn/tardis/pull/911) Use Russian roulette to kill v-packets with negligible weight (#911) (@chvogl) +- [#697](https://github.com/tardis-sn/tardis/pull/697) Relativity (#697) (@chvogl) + +### v3.0.a1 (2019/03/10 15:03 +00:00) +- [#901](https://github.com/tardis-sn/tardis/pull/901) .nojekyll added to docs (#901) (@debajyotidasgupta) +- [#897](https://github.com/tardis-sn/tardis/pull/897) add pytest azurepipelines (#897) (@wkerzendorf) +- [#896](https://github.com/tardis-sn/tardis/pull/896) Adding general build artefacts (#896) (@wkerzendorf) +- [#894](https://github.com/tardis-sn/tardis/pull/894) Azure pipeline for TARDIS (#894) (@wkerzendorf) +- [#893](https://github.com/tardis-sn/tardis/pull/893) add doctr to TARDIS (#893) (@wkerzendorf) +- [#892](https://github.com/tardis-sn/tardis/pull/892) adding azure-pipelines (#892) (@wkerzendorf) +- [#891](https://github.com/tardis-sn/tardis/pull/891) New template setup from astropy (#891) (@wkerzendorf) +- [#888](https://github.com/tardis-sn/tardis/pull/888) Update installation.rst (#888) (@nileshpatra) +- [#886](https://github.com/tardis-sn/tardis/pull/886) Pandas ix fix (#886) (@wkerzendorf) +- [#879](https://github.com/tardis-sn/tardis/pull/879) Python3 version of TARDIS (#879) (@wkerzendorf) +- [#881](https://github.com/tardis-sn/tardis/pull/881) Adds description of gcc problem to documentation (#881) (@ycamacho) +- [#859](https://github.com/tardis-sn/tardis/pull/859) Use interpolated values to do formal integral with more shells (#859) (@chvogl) +- [#873](https://github.com/tardis-sn/tardis/pull/873) Some small fixes related to the documentation and the building process (Fix #842) (#873) (@unoebauer) +- [#868](https://github.com/tardis-sn/tardis/pull/868) Add Travis Stages: Activate Integration tests (#868) (@unoebauer) +- [#866](https://github.com/tardis-sn/tardis/pull/866) Add Travis Caching and separate scripts for CI (#866) (@wkerzendorf) +- [#864](https://github.com/tardis-sn/tardis/pull/864) Unify unittest hdfs (#864) (@unoebauer) +- [#865](https://github.com/tardis-sn/tardis/pull/865) Adding CodeCov integration (#865) (@wkerzendorf) +- [#860](https://github.com/tardis-sn/tardis/pull/860) add call_back to run_tardis (#860) (@wkerzendorf) +- [#863](https://github.com/tardis-sn/tardis/pull/863) Thomson cross section: Continuation of PR #688 (#863) (@unoebauer) +- [#850](https://github.com/tardis-sn/tardis/pull/850) Add full test for formal integral method (#850) (@unoebauer) +- [#861](https://github.com/tardis-sn/tardis/pull/861) Describe refdata update and workflow refactor (#861) (@wkerzendorf) +- [#848](https://github.com/tardis-sn/tardis/pull/848) Add capability to store information about the plasma state during iterations (#848) (@unoebauer) +- [#857](https://github.com/tardis-sn/tardis/pull/857) Refactor logging (#857) (@wkerzendorf) +- [#856](https://github.com/tardis-sn/tardis/pull/856) Extend formal integral to line_interaction_type macroatom (#856) (@chvogl) +- [#855](https://github.com/tardis-sn/tardis/pull/855) Make the conda-forge channel the only channel (#855) (@wkerzendorf) +- [#853](https://github.com/tardis-sn/tardis/pull/853) Fix formal integral (#853) (@chvogl) +- [#849](https://github.com/tardis-sn/tardis/pull/849) Missing refdata (#849) (@wkerzendorf) +- [#851](https://github.com/tardis-sn/tardis/pull/851) add atomic data description (#851) (@wkerzendorf) +- [#845](https://github.com/tardis-sn/tardis/pull/845) Update Documentation: new location of tardis_example (#845) (@unoebauer) +- [#843](https://github.com/tardis-sn/tardis/pull/843) Fix issue with custom_composition reader (#843) (@unoebauer) +- [#844](https://github.com/tardis-sn/tardis/pull/844) Remove bbsampling from schema file (#844) (@pfreddy) +- [#837](https://github.com/tardis-sn/tardis/pull/837) Add json sphinx (#837) (@wkerzendorf) +- [#841](https://github.com/tardis-sn/tardis/pull/841) Fixed indentation and position of delta_treatment in plasma/standard_plasmas.py (#841) (@Heringer-Epson) +- [#838](https://github.com/tardis-sn/tardis/pull/838) fix cython version to specific commit (#838) (@wkerzendorf) +- [#821](https://github.com/tardis-sn/tardis/pull/821) Simplify convergence strategies (#821) (@unoebauer) +- [#833](https://github.com/tardis-sn/tardis/pull/833) restructure landing page to use notebooks (#833) (@wkerzendorf) +- [#832](https://github.com/tardis-sn/tardis/pull/832) Fixes #830 (#832) (@unoebauer) + +### v2_test3 (2018/06/18 20:13 +00:00) +- [#829](https://github.com/tardis-sn/tardis/pull/829) build bleeding edge cython (#829) (@wkerzendorf) +- [#828](https://github.com/tardis-sn/tardis/pull/828) trying to get travis to build (#828) (@wkerzendorf) +- [#827](https://github.com/tardis-sn/tardis/pull/827) Update travis link to miniconda (#827) (@unoebauer) +- [#826](https://github.com/tardis-sn/tardis/pull/826) Remove docu refs to tardis_example.tar.gz (#826) (@unoebauer) +- [#820](https://github.com/tardis-sn/tardis/pull/820) update of mailmap (#820) (@wkerzendorf) +- [#819](https://github.com/tardis-sn/tardis/pull/819) Reintroduce and update changelog (#819) (@unoebauer) +- [#815](https://github.com/tardis-sn/tardis/pull/815) Update and Fix Documentation (#815) (@unoebauer) +- [#816](https://github.com/tardis-sn/tardis/pull/816) Remove old and broken badges (@unoebauer) +- [#814](https://github.com/tardis-sn/tardis/pull/814) Fix numpydoc problem (@wkerzendorf, @unoebauer) + +### v2.0 (2018/04/05 13:03 +00:00) +- [#812](https://github.com/tardis-sn/tardis/pull/812) Update of documentation (@unoebauer) +- [#809](https://github.com/tardis-sn/tardis/pull/809) fix dependencies for tardis conda env (#809) (@wkerzendorf) +- [#761](https://github.com/tardis-sn/tardis/pull/761) Add caching for integrated spectrum: Fix #760 (@unoebauer) +- [#715](https://github.com/tardis-sn/tardis/pull/715) Merge 'generate_reference_path' and 'reference_path' in integration tests (bug #672) (@rinklejain) +- [#801](https://github.com/tardis-sn/tardis/pull/801) Decay of isotopes branch (@wkerzendorf, @vg3095, @pfreddy) +- [#806](https://github.com/tardis-sn/tardis/pull/806) Fix reference dictionary problem (@pfreddy) +- [#803](https://github.com/tardis-sn/tardis/pull/803) include yml files in MANIFEST (@wkerzendorf) +- [#802](https://github.com/tardis-sn/tardis/pull/802) Fix for PR #801 (@vg3095) +- [#799](https://github.com/tardis-sn/tardis/pull/799) tardis/plasma/standard_plasmas.py: old database files warning (@laudb) +- [#797](https://github.com/tardis-sn/tardis/pull/797) Minor Updates: Fixes for #521 and #699 (@unoebauer) +- [#796](https://github.com/tardis-sn/tardis/pull/796) Prevent pandas SettingWithCopyWarning by copying DataFrames when slicing (@lukeshingles) +- [#795](https://github.com/tardis-sn/tardis/pull/795) Force deactivate LaTeX in GUI - Fix #441 (@unoebauer) +- [#793](https://github.com/tardis-sn/tardis/pull/793) Add pyside to requirements (needed for GUI) (@wkerzendorf, @unoebauer) +- [#794](https://github.com/tardis-sn/tardis/pull/794) add new readthedocs.yml (@wkerzendorf) +- [#792](https://github.com/tardis-sn/tardis/pull/792) Fix compatibility with networkx 2.0 (@lukeshingles) +- [#791](https://github.com/tardis-sn/tardis/pull/791) Propagate changes to the line index into the GUI code (@yeganer) +- [#786](https://github.com/tardis-sn/tardis/pull/786) The final carsus merge (@yeganer, @ftsamis, @mishinma) +- [#782](https://github.com/tardis-sn/tardis/pull/782) Plasma write_to_tex/dot unit tests (@vg3095) +- [#781](https://github.com/tardis-sn/tardis/pull/781) Omit coverage of test related files (@vg3095) +- [#785](https://github.com/tardis-sn/tardis/pull/785) [DOC] Update Running tests doc (@vg3095) +- [#774](https://github.com/tardis-sn/tardis/pull/774) Replace Comparison values in Plasma Unit Tests with reference HDF file (@vg3095) +- [#780](https://github.com/tardis-sn/tardis/pull/780) LevelBoltzmannFactorNLTE.from_config is now a staticmethod (@yeganer) +- [#778](https://github.com/tardis-sn/tardis/pull/778) Fix NLTE (@yeganer) +- [#776](https://github.com/tardis-sn/tardis/pull/776) Fix compatibility bug in radiative_properties (@yeganer) +- [#779](https://github.com/tardis-sn/tardis/pull/779) Save coverage report when tests use tardis-refdata (@vg3095) +- [#775](https://github.com/tardis-sn/tardis/pull/775) Transition from atomic-dataset config option to tardis-refdata (@vg3095) +- [#772](https://github.com/tardis-sn/tardis/pull/772) [TEP007] CMFGEN density parser (@vg3095) +- [#771](https://github.com/tardis-sn/tardis/pull/771) [TEP007] Add cmfgen2tardis script (@vg3095) +- [#757](https://github.com/tardis-sn/tardis/pull/757) [TEP007] Decay and merge isotopic abundance dataframe (@vg3095) +- [#769](https://github.com/tardis-sn/tardis/pull/769) [TEP014] [DOC] Updated to_hdf notebook (@vg3095) +- [#759](https://github.com/tardis-sn/tardis/pull/759) Formal Integral: including electron scattering (@unoebauer, @yeganer) +- [#768](https://github.com/tardis-sn/tardis/pull/768) [TEP014] Simulation HDF and deprecated to_hdf cleanup. (@vg3095) +- [#773](https://github.com/tardis-sn/tardis/pull/773) Update Documentation (@unoebauer) +- [#767](https://github.com/tardis-sn/tardis/pull/767) [TEP007] Docs for isotope config (@vg3095) +- [#764](https://github.com/tardis-sn/tardis/pull/764) [TEP007] Isotope stratified file support (@vg3095) +- [#752](https://github.com/tardis-sn/tardis/pull/752) [TEP014] PlasmaWriterMixin (@vg3095) +- [#748](https://github.com/tardis-sn/tardis/pull/748) [TEP014] Update Runner and Spectrum classes to use HDFWriter + Unit Tests (@vg3095) +- [#762](https://github.com/tardis-sn/tardis/pull/762) [TEP007] Isotope uniform config option (@vg3095) +- [#765](https://github.com/tardis-sn/tardis/pull/765) Attempt to fix up the GUI (@ssim, @unoebauer) +- [#13](https://github.com/tardis-sn/tardis/pull/13) Introduce proper masking for GUI (addition to PR #765) (@unoebauer) +- [#1](https://github.com/tardis-sn/tardis/pull/1) Streamline the OMP implementation (@yeganer) +- [#756](https://github.com/tardis-sn/tardis/pull/756) [TEP007] [WIP] Isotope Abundances class (@vg3095, @wkerzendorf) +- [#758](https://github.com/tardis-sn/tardis/pull/758) Add new version to tardis_env27 and add pyne (@wkerzendorf) +- [#753](https://github.com/tardis-sn/tardis/pull/753) [TEP014][DOC] HDFWriter Documentation (@vg3095) +- [#740](https://github.com/tardis-sn/tardis/pull/740) [GSoC] Formal integral Project (@yeganer) +- [#747](https://github.com/tardis-sn/tardis/pull/747) [TEP014] Update Model and Density classes to use HDFWriter + Unit Tests (@vg3095) +- [#750](https://github.com/tardis-sn/tardis/pull/750) [TEP005][QOL] Add MontecarloRunner.spectrum_integrated (@yeganer) +- [#749](https://github.com/tardis-sn/tardis/pull/749) [TEP014] Change name of HDFWriter to HDFWriterMixin (@vg3095) +- [#745](https://github.com/tardis-sn/tardis/pull/745) [TEP005][DOC] Documentation (@yeganer) +- [#751](https://github.com/tardis-sn/tardis/pull/751) [QOL] Add default axis to TARDISSpectrum.plot (@yeganer) +- [#743](https://github.com/tardis-sn/tardis/pull/743) Fix bug in plasma (@yeganer) +- [#744](https://github.com/tardis-sn/tardis/pull/744) [TEP014] Added HDFWriter class + Unit Tests (@vg3095) +- [#746](https://github.com/tardis-sn/tardis/pull/746) [TEP005][CONFIG] Prevent incompatible configurations (@yeganer) +- [#741](https://github.com/tardis-sn/tardis/pull/741) Add unit tests for the formal integral (@yeganer) +- [#742](https://github.com/tardis-sn/tardis/pull/742) Fix clash in RTD dependencies (@yeganer) +- [#735](https://github.com/tardis-sn/tardis/pull/735) Move common ctest fixtures into conftest.py (@yeganer) +- [#729](https://github.com/tardis-sn/tardis/pull/729) Refactor spectrum (@yeganer) +- [#730](https://github.com/tardis-sn/tardis/pull/730) Fix test_plasma_simple not skipping properly (@yeganer) +- [#712](https://github.com/tardis-sn/tardis/pull/712) Colorize Logger (@vg3095) +- [#718](https://github.com/tardis-sn/tardis/pull/718) Unit test for untested method of montecarlo simulation code (@suyashgupta20) +- [#724](https://github.com/tardis-sn/tardis/pull/724) Rebase PR #678 (@yeganer) +- [#709](https://github.com/tardis-sn/tardis/pull/709) Add note about broken GUI to docu (@unoebauer) +- [#708](https://github.com/tardis-sn/tardis/pull/708) Add new installation instructions (@wkerzendorf) +- [#704](https://github.com/tardis-sn/tardis/pull/704) Fix ignoring model tests (@ftsamis) +- [#700](https://github.com/tardis-sn/tardis/pull/700) Add contributing guidelines (@wkerzendorf) +- [#686](https://github.com/tardis-sn/tardis/pull/686) converted spectrum_frequency (@chinmay0301) +- [#696](https://github.com/tardis-sn/tardis/pull/696) Add missing diagnostics property to runner's to_hdf list (@unoebauer) +- [#694](https://github.com/tardis-sn/tardis/pull/694) Significantly reduce peak memory usage when vpacket logging is enabled (@ftsamis) +- [#682](https://github.com/tardis-sn/tardis/pull/682) Import montecarlo.base in the __init__ module of the package. (@ftsamis) +- [#670](https://github.com/tardis-sn/tardis/pull/670) Integrate continuum interactions into cmontecarlo (@chvogl) +- [#652](https://github.com/tardis-sn/tardis/pull/652) [TEP006] Aggregate TARDIS restructure and configuration system cleanup (@ftsamis) +- [#677](https://github.com/tardis-sn/tardis/pull/677) Update link to tardis_example.yml in documentation - Fix #676 (@unoebauer) +- [#674](https://github.com/tardis-sn/tardis/pull/674) Change matplotlib backend - fix test_integration remote plotting issue (@unoebauer) +- [#664](https://github.com/tardis-sn/tardis/pull/664) Kd final test (@wkerzendorf, @kdexd, @yeganer) +- [#21](https://github.com/tardis-sn/tardis/pull/21) fKd final test (@yeganer) +- [#668](https://github.com/tardis-sn/tardis/pull/668) change to tardis atom data on git lfs (@wkerzendorf) +- [#666](https://github.com/tardis-sn/tardis/pull/666) Remove News from main TARDIS github page (@unoebauer) +- [#667](https://github.com/tardis-sn/tardis/pull/667) Update SOCIS and GSOC students credits (@unoebauer) +- [#665](https://github.com/tardis-sn/tardis/pull/665) Add to_hdf compression (@yeganer) +- [#663](https://github.com/tardis-sn/tardis/pull/663) Develop (@kdexd) +- [#657](https://github.com/tardis-sn/tardis/pull/657) Require pyyaml 3.12 (@ftsamis) +- [#659](https://github.com/tardis-sn/tardis/pull/659) Update installation docs (@ftsamis) +- [#653](https://github.com/tardis-sn/tardis/pull/653) Facility to provide per-setup atom data as well as save report locally. (@kdexd) +- [#641](https://github.com/tardis-sn/tardis/pull/641) Fix detailed radiative rates (@yeganer) +- [#642](https://github.com/tardis-sn/tardis/pull/642) Use pytest-html==1.10.0, modify DokuReport class accordingly. (@kdexd) +- [#630](https://github.com/tardis-sn/tardis/pull/630) [IntegrationTests] Overview page on Dokuwiki. Running the integration tests will update an overview page on DokuWiki. (@kdexd) +- [#620](https://github.com/tardis-sn/tardis/pull/620) Runner script to automate execution of integration tests. (@kdexd) +- [#628](https://github.com/tardis-sn/tardis/pull/628) Remove exponent property from yaml files with exponential density (@ftsamis) +- [#626](https://github.com/tardis-sn/tardis/pull/626) Revert "Add exponent as a property for exponential density" (@ftsamis) +- [#542](https://github.com/tardis-sn/tardis/pull/542) Updates to He NLTE treatment. (@aoifeboyle) +- [#612](https://github.com/tardis-sn/tardis/pull/612) Add facility to generate and accept HDF files as reference data for Integration Tests. (@kdexd) +- [#614](https://github.com/tardis-sn/tardis/pull/614) Omit the integration_tests when running coveralls (@yeganer) +- [#619](https://github.com/tardis-sn/tardis/pull/619) Fixed incorrect name in error message (@Tobychev) +- [#618](https://github.com/tardis-sn/tardis/pull/618) to_hdf: If only the last run is stored, do not add a counter in the name (@ftsamis) +- [#617](https://github.com/tardis-sn/tardis/pull/617) Add a to_hdf method on TARDISSpectrum (@ftsamis) +- [#600](https://github.com/tardis-sn/tardis/pull/600) Parametrize the Slow Test class with two setups. (@kdexd) +- [#613](https://github.com/tardis-sn/tardis/pull/613) Fix bug in montecarlo.pyx (@yeganer) +- [#595](https://github.com/tardis-sn/tardis/pull/595) Line absorption rate estimator (@Tobychev) +- [#606](https://github.com/tardis-sn/tardis/pull/606) Merge to_hdf (@ftsamis, @wkerzendorf) +- [#585](https://github.com/tardis-sn/tardis/pull/585) [TEP002] Add a to_hdf method to the MontecarloRunner (#585) (@ftsamis) +- [#597](https://github.com/tardis-sn/tardis/pull/597) Use abundances, densities filepaths relative to w7 config file. (@kdexd) +- [#569](https://github.com/tardis-sn/tardis/pull/569) Added a conda environment for tardis (@wkerzendorf) +- [#565](https://github.com/tardis-sn/tardis/pull/565) Change the way AtomData quantities are initialized (@yeganer) +- [#599](https://github.com/tardis-sn/tardis/pull/599) Update the tardis_example tar file provided in the documentation. (@ftsamis) +- [#598](https://github.com/tardis-sn/tardis/pull/598) Fix convergence handling in run_legacy_simulation - fix issue #593 (@unoebauer) +- [#590](https://github.com/tardis-sn/tardis/pull/590) Link images of comparison plots in DokuReport using hookwrapper. (@kdexd) +- [#591](https://github.com/tardis-sn/tardis/pull/591) Fix path of CSS and JS files used in html report. (@kdexd) +- [#594](https://github.com/tardis-sn/tardis/pull/594) Provide tardis.yaml_load shortcut (@yeganer) +- [#592](https://github.com/tardis-sn/tardis/pull/592) Fix virt energy (@yeganer) +- [#583](https://github.com/tardis-sn/tardis/pull/583) Subclass pytest-html's HTMLReport to DokuReport class for report generation and upload (@kdexd) +- [#587](https://github.com/tardis-sn/tardis/pull/587) Move the three spectra attributes from Radial1DModel to MontecarloRunner (@ftsamis) +- [#578](https://github.com/tardis-sn/tardis/pull/578) Shift slow test related pytest hooks in lower level conftest.py (#578) (@kdexd) +- [#581](https://github.com/tardis-sn/tardis/pull/581) Update several files to match package_template (@yeganer) +- [#576](https://github.com/tardis-sn/tardis/pull/576) [config-system] Validator rewrite: Use jsonschema (@ftsamis) +- [#575](https://github.com/tardis-sn/tardis/pull/575) Replace misused calls to yaml.load with a helper function. (@ftsamis) +- [#570](https://github.com/tardis-sn/tardis/pull/570) Enable generation of html report of integration tests, and upload to dokuwiki. (@kdexd) +- [#574](https://github.com/tardis-sn/tardis/pull/574) tardis/base.py: Remove duplicate code from run_tardis (@ftsamis) +- [#573](https://github.com/tardis-sn/tardis/pull/573) io/util.py (YAMLLoader): Use OrderedDict to store loaded YAML (@ftsamis) +- [#572](https://github.com/tardis-sn/tardis/pull/572) Change the way YAMLLoader resolves some properties (@ftsamis) +- [#532](https://github.com/tardis-sn/tardis/pull/532) Documentation overhaul (@unoebauer, @kdexd, @chvogl) +- [#571](https://github.com/tardis-sn/tardis/pull/571) data/tardis_config_definition.yml: Set the exponent property as mandatory when density is exponential. (#571) (@ftsamis) +- [#566](https://github.com/tardis-sn/tardis/pull/566) Initial laydown of comparison plots for TestW7. (#566) (@kdexd) +- [#567](https://github.com/tardis-sn/tardis/pull/567) Accept keyword arguments for Configuration.from_yaml (@yeganer) +- [#561](https://github.com/tardis-sn/tardis/pull/561) TestW7: Assertions for spectrum quantities, fixture for handling baseline data. (@kdexd) +- [#515](https://github.com/tardis-sn/tardis/pull/515) [config-system] Add a custom YAML Loader to parse astropy quantities (@ftsamis) +- [#555](https://github.com/tardis-sn/tardis/pull/555) Use pytest's monkeypatch.chdir to change the working directory in the config_reader tests (@ftsamis, @lukeshingles) +- [#558](https://github.com/tardis-sn/tardis/pull/558) Integration Test class for Stratified W7 setup. (@kdexd) +- [#557](https://github.com/tardis-sn/tardis/pull/557) Enable skipping slow tests. (@kdexd) +- [#544](https://github.com/tardis-sn/tardis/pull/544) Continue cmontecarlo tests refactor. Extend #530. (@kdexd) +- [#543](https://github.com/tardis-sn/tardis/pull/543) Fix issue #535: Treat rel. paths inside config relative to the config file (@lukeshingles, @ftsamis) +- [#1](https://github.com/tardis-sn/tardis/pull/1) Write tests for the issue #535 fix. (@ftsamis) +- [#551](https://github.com/tardis-sn/tardis/pull/551) Add SOCIS 2016 advertisement (@unoebauer) +- [#547](https://github.com/tardis-sn/tardis/pull/547) Fix Issue #548 (@kdexd) +- [#545](https://github.com/tardis-sn/tardis/pull/545) added mailmap to compile the commits for each person (#545) (@wkerzendorf) +- [#539](https://github.com/tardis-sn/tardis/pull/539) Adding OSX to our travis build (#539) (@wkerzendorf) +- [#541](https://github.com/tardis-sn/tardis/pull/541) Move progress bar update after calculation (#541) (@yeganer) +- [#540](https://github.com/tardis-sn/tardis/pull/540) Mirroring C enums in Python for CMontecarlo tests. (@kdexd) +- [#538](https://github.com/tardis-sn/tardis/pull/538) Upgrading to the new Readthedocs infrastructure (#538) (@wkerzendorf) +- [#530](https://github.com/tardis-sn/tardis/pull/530) Refactor cmontecarlo testing framework (@kdexd) +- [#537](https://github.com/tardis-sn/tardis/pull/537) Ignore invalid OpenMP nthreads values (#537) (@yeganer) +- [#533](https://github.com/tardis-sn/tardis/pull/533) Remove rpacket.recently_crossed_boundary flag (@yeganer) +- [#514](https://github.com/tardis-sn/tardis/pull/514) Performance (@yeganer) +- [#531](https://github.com/tardis-sn/tardis/pull/531) Organize headers in C-Extension (@yeganer) +- [#526](https://github.com/tardis-sn/tardis/pull/526) Docs: Include conda-requirements in installation.rst (@kdexd) +- [#519](https://github.com/tardis-sn/tardis/pull/519) Documentation:Installation modify command (@yeganer) +- [#510](https://github.com/tardis-sn/tardis/pull/510) Updates requirements to solve libgfortran error. Fixes #509 (@kdexd) +- [#495](https://github.com/tardis-sn/tardis/pull/495) Fix energy conservation (@unoebauer) +- [#486](https://github.com/tardis-sn/tardis/pull/486) Bugfix radiative rates type detailed (@chvogl, @unoebauer) +- [#488](https://github.com/tardis-sn/tardis/pull/488) Fix indentation in c extension (@yeganer) +- [#494](https://github.com/tardis-sn/tardis/pull/494) Fix #493 (@yeganer) +- [#1](https://github.com/tardis-sn/tardis/pull/1) Add simple test for j_blue_estimator (@unoebauer) +- [#491](https://github.com/tardis-sn/tardis/pull/491) Include IDE specific auto-generated files in .gitignore. Fixes #490 (@kdexd) +- [#485](https://github.com/tardis-sn/tardis/pull/485) Montecarlo progress (@yeganer) +- [#457](https://github.com/tardis-sn/tardis/pull/457) Fix Issue #454 (@yeganer) +- [#484](https://github.com/tardis-sn/tardis/pull/484) Minor improvement of vpacket logging scheme (@unoebauer) +- [#479](https://github.com/tardis-sn/tardis/pull/479) added units to test_simulation.py (@mishinma) +- [#469](https://github.com/tardis-sn/tardis/pull/469) Changed the Link for AstroPy's dev workflow (@souravsingh) +- [#481](https://github.com/tardis-sn/tardis/pull/481) Introcuding safe_malloc and safe_realloc macros: fixes #480 (@unoebauer) +- [#475](https://github.com/tardis-sn/tardis/pull/475) Reorganize import statements in atomic.py (@Pratik151) +- [#471](https://github.com/tardis-sn/tardis/pull/471) Quickfix to solve Issue #455 and #464 (@yeganer) +- [#472](https://github.com/tardis-sn/tardis/pull/472) fixed build of documentation on readthedocs (@wkerzendorf) +- [#461](https://github.com/tardis-sn/tardis/pull/461) Bugfix test cmontecarlo (@yeganer) +- [#452](https://github.com/tardis-sn/tardis/pull/452) Build fix and nthreads fix - fixes #356 (@unoebauer) +- [#450](https://github.com/tardis-sn/tardis/pull/450) Checking for zero-volume cells: Fixes issue #79 (@unoebauer) +- [#449](https://github.com/tardis-sn/tardis/pull/449) added test to verify virtual spectrum (@unoebauer) +- [#446](https://github.com/tardis-sn/tardis/pull/446) calculate virtual spectrum independently of vpacket loggin - fixes #445 (@unoebauer) +- [#440](https://github.com/tardis-sn/tardis/pull/440) started addressing issue #436 (@unoebauer) +- [#426](https://github.com/tardis-sn/tardis/pull/426) Simulation - restructure (@wkerzendorf) +- [#434](https://github.com/tardis-sn/tardis/pull/434) updated the .travis.yml file to do a rehash before executing conda (@wkerzendorf) +- [#433](https://github.com/tardis-sn/tardis/pull/433) Optional vpacket logging WIP (@tardis-sn) +- [#425](https://github.com/tardis-sn/tardis/pull/425) Updated nlte.rst (@souravsingh) +- [#424](https://github.com/tardis-sn/tardis/pull/424) added a new requirement for astropy (@wkerzendorf) +- [#1](https://github.com/tardis-sn/tardis/pull/1) Update nlte.rst (@souravsingh) +- [#375](https://github.com/tardis-sn/tardis/pull/375) made sure that atomic does not reinsert the index into the dataframe (@wkerzendorf) +- [#420](https://github.com/tardis-sn/tardis/pull/420) Memory issue (@wkerzendorf) +- [#416](https://github.com/tardis-sn/tardis/pull/416) added new version requirements for pandas and astropy (@wkerzendorf) +- [#414](https://github.com/tardis-sn/tardis/pull/414) Improvements to He approximation. (@aoifeboyle) +- [#413](https://github.com/tardis-sn/tardis/pull/413) WIP Docstrings (@wkerzendorf) +- [#412](https://github.com/tardis-sn/tardis/pull/412) Fix for zeta issues. (@wkerzendorf) +- [#3](https://github.com/tardis-sn/tardis/pull/3) Plasma/ab zeta fix (@wkerzendorf) +- [#410](https://github.com/tardis-sn/tardis/pull/410) WIP: Cleaning up plasma (@wkerzendorf) +- [#399](https://github.com/tardis-sn/tardis/pull/399) Plasma optimization (@wkerzendorf, @mreineck) +- [#2](https://github.com/tardis-sn/tardis/pull/2) fix for chi_0 problem (@wkerzendorf) +- [#19](https://github.com/tardis-sn/tardis/pull/19) Plasma optimisation fix. (@aoifeboyle) +- [#404](https://github.com/tardis-sn/tardis/pull/404) Montecarlo/new packet source (@wkerzendorf) +- [#407](https://github.com/tardis-sn/tardis/pull/407) Organising of plasma base files. (@aoifeboyle) +- [#405](https://github.com/tardis-sn/tardis/pull/405) Pandas macroatom issue fix (@wkerzendorf) +- [#406](https://github.com/tardis-sn/tardis/pull/406) Numerical He NLTE. (@aoifeboyle) +- [#401](https://github.com/tardis-sn/tardis/pull/401) Alternative fix for issue #393 (@mreineck) +- [#398](https://github.com/tardis-sn/tardis/pull/398) More cleanups (@mreineck) +- [#400](https://github.com/tardis-sn/tardis/pull/400) Change to NLTE properties (@aoifeboyle) +- [#397](https://github.com/tardis-sn/tardis/pull/397) Montecarlo/memoryview (@wkerzendorf) +- [#396](https://github.com/tardis-sn/tardis/pull/396) added virt_packet properties to to_hdf5 list (Kromer plot) (@unoebauer) +- [#391](https://github.com/tardis-sn/tardis/pull/391) More work on cmontecarlo.c and the unit tests (@mreineck) +- [#364](https://github.com/tardis-sn/tardis/pull/364) added tardis stats (@wkerzendorf) +- [#392](https://github.com/tardis-sn/tardis/pull/392) Consistency between old virtual packet arrays and new ones introduced in PR 384 (@unoebauer) +- [#389](https://github.com/tardis-sn/tardis/pull/389) changes to address issue #388 (@mreineck) +- [#386](https://github.com/tardis-sn/tardis/pull/386) improve inlining specifications and fix a few problems (@mreineck) +- [#384](https://github.com/tardis-sn/tardis/pull/384) Minor changes in Monte Carlo and model part for Kromer plots (@unoebauer) +- [#374](https://github.com/tardis-sn/tardis/pull/374) WIP: Helium approx. (@wkerzendorf) +- [#382](https://github.com/tardis-sn/tardis/pull/382) Improvements to plasma graph (@aoifeboyle) +- [#381](https://github.com/tardis-sn/tardis/pull/381) Fix to plasma issue with GUI. (@aoifeboyle) +- [#379](https://github.com/tardis-sn/tardis/pull/379) Fix of to_hdf5. (@aoifeboyle) +- [#377](https://github.com/tardis-sn/tardis/pull/377) Plasma static methods (@aoifeboyle) +- [#373](https://github.com/tardis-sn/tardis/pull/373) Removing test_plasma_nlte.py. (@aoifeboyle) +- [#372](https://github.com/tardis-sn/tardis/pull/372) Correcting some old plasma tests. (@aoifeboyle) +- [#304](https://github.com/tardis-sn/tardis/pull/304) Plasma restructure (@wkerzendorf) +- [#370](https://github.com/tardis-sn/tardis/pull/370) Removed some tests temporarily. (@aoifeboyle) +- [#369](https://github.com/tardis-sn/tardis/pull/369) Removed import plasma_array (@aoifeboyle) +- [#368](https://github.com/tardis-sn/tardis/pull/368) Fixing plasma merge (@aoifeboyle) +- [#367](https://github.com/tardis-sn/tardis/pull/367) preparing for the new container archictecture used by travis (@wkerzendorf) +- [#365](https://github.com/tardis-sn/tardis/pull/365) LTE Plasma Test (@aoifeboyle) +- [#361](https://github.com/tardis-sn/tardis/pull/361) Added formulae to graph. (@aoifeboyle) +- [#360](https://github.com/tardis-sn/tardis/pull/360) Rebasedvirtrunner (@orbitfold, @wkerzendorf) +- [#362](https://github.com/tardis-sn/tardis/pull/362) Adjusted stimulated emission factor for NLTE. (@aoifeboyle) +- [#355](https://github.com/tardis-sn/tardis/pull/355) Add with-openmp to develop (@orbitfold) +- [#354](https://github.com/tardis-sn/tardis/pull/354) added print statement for openmp (@wkerzendorf) +- [#350](https://github.com/tardis-sn/tardis/pull/350) Tidying/Testing/Documenting Plasma (@aoifeboyle) +- [#352](https://github.com/tardis-sn/tardis/pull/352) Attempt at solution. (@aoifeboyle) +- [#330](https://github.com/tardis-sn/tardis/pull/330) [GSoC 2015 WIP] Testing other montecarlo functions (@kaushik94) +- [#347](https://github.com/tardis-sn/tardis/pull/347) NLTE (@aoifeboyle) +- [#325](https://github.com/tardis-sn/tardis/pull/325) Bound-free interactions (@chvogl) +- [#344](https://github.com/tardis-sn/tardis/pull/344) Plasma/multiple outputs (@aoifeboyle) +- [#346](https://github.com/tardis-sn/tardis/pull/346) linked the plasma documentation again (@wkerzendorf) +- [#338](https://github.com/tardis-sn/tardis/pull/338) OpenMP WIP (@orbitfold) +- [#343](https://github.com/tardis-sn/tardis/pull/343) Plasma/multi output (@wkerzendorf) +- [#17](https://github.com/tardis-sn/tardis/pull/17) Fixes. (@aoifeboyle) +- [#324](https://github.com/tardis-sn/tardis/pull/324) Gui package (WIP) (@gautam1168) +- [#327](https://github.com/tardis-sn/tardis/pull/327) [GSoC 2015 MRG] Testing getters setters (@kaushik94) +- [#322](https://github.com/tardis-sn/tardis/pull/322) Updating the gui documentation. (@gautam1168) +- [#296](https://github.com/tardis-sn/tardis/pull/296) Gui with menubars(WIP) (@gautam1168) +- [#320](https://github.com/tardis-sn/tardis/pull/320) virtual packets frequency cut (@unoebauer) +- [#314](https://github.com/tardis-sn/tardis/pull/314) Installation FAQ (@wkerzendorf) +- [#310](https://github.com/tardis-sn/tardis/pull/310) A more detailed description of the montecarlo process (@wkerzendorf) +- [#301](https://github.com/tardis-sn/tardis/pull/301) [GSoC 2015 MRG] Restructuring Montecarlo (@kaushik94) +- [#234](https://github.com/tardis-sn/tardis/pull/234) Removing usage of yield in test_utils.py (@kaushik94) +- [#299](https://github.com/tardis-sn/tardis/pull/299) Test of model_reader.py (@wkerzendorf, @ssim) +- [#288](https://github.com/tardis-sn/tardis/pull/288) -fixed discrepancy concerning hold_iterations (@unoebauer) +- [#286](https://github.com/tardis-sn/tardis/pull/286) Proposal for a new to HD5 function. (@mklauser) +- [#283](https://github.com/tardis-sn/tardis/pull/283) fixed the reader for the older Paper1 format yaml files (@wkerzendorf) +- [#269](https://github.com/tardis-sn/tardis/pull/269) Miscellaneous README changes (@iKevinY) +- [#251](https://github.com/tardis-sn/tardis/pull/251) gui.py and running.rst edited for PyQt4 and PySide (@gautam1168) +- [#250](https://github.com/tardis-sn/tardis/pull/250) Docs/pip reqs (@wkerzendorf) +- [#244](https://github.com/tardis-sn/tardis/pull/244) added coverage back (@wkerzendorf) +- [#240](https://github.com/tardis-sn/tardis/pull/240) rename of pip-requirements to conda-requirements (@wkerzendorf) +- [#225](https://github.com/tardis-sn/tardis/pull/225) Test added in test_atomic.py (@vaibhav4595) +- [#223](https://github.com/tardis-sn/tardis/pull/223) Update git_workflow.rst (@ujjwalwahi) + +### 1.0rc3 (2015/03/03 12:54 +00:00) +- [#219](https://github.com/tardis-sn/tardis/pull/219) fixing run_tardis (@wkerzendorf) + +### 1.0.dev1419 (2015/02/19 13:58 +00:00) +- [#218](https://github.com/tardis-sn/tardis/pull/218) Docs/anaconda install (@wkerzendorf) +- [#217](https://github.com/tardis-sn/tardis/pull/217) Docs/fixing pip requirements (@wkerzendorf) +- [#216](https://github.com/tardis-sn/tardis/pull/216) some fixes to the gui so it works with pyside (@wkerzendorf) +- [#214](https://github.com/tardis-sn/tardis/pull/214) Preparing the docs for V1 (@wkerzendorf) +- [#210](https://github.com/tardis-sn/tardis/pull/210) a restructure of the C-file file structure (@wkerzendorf, @mklauser) +- [#7](https://github.com/tardis-sn/tardis/pull/7) include .c in montecarlo/src/ for the randomkit files (@mklauser) +- [#209](https://github.com/tardis-sn/tardis/pull/209) Testing/pandas version info (@wkerzendorf) +- [#205](https://github.com/tardis-sn/tardis/pull/205) As simpler `run_tardis` (@wkerzendorf) +- [#206](https://github.com/tardis-sn/tardis/pull/206) Minor but critical fix to binary search (reverse) (@ssim) +- [#199](https://github.com/tardis-sn/tardis/pull/199) Gnuify cmontecarlo.c and cmontecarlo.h files (@orbitfold) +- [#203](https://github.com/tardis-sn/tardis/pull/203) Docs/reporting bugs (@wkerzendorf) +- [#201](https://github.com/tardis-sn/tardis/pull/201) A critical warning was added to the model indicating that no packet has left the simulation through the outer boundary. (@mklauser) +- [#200](https://github.com/tardis-sn/tardis/pull/200) added a new location for the atomic data. (@wkerzendorf) +- [#196](https://github.com/tardis-sn/tardis/pull/196) New binary search added (@mklauser) +- [#169](https://github.com/tardis-sn/tardis/pull/169) fix for #168 (@mklauser) +- [#194](https://github.com/tardis-sn/tardis/pull/194) Setup/fix requirements (@wkerzendorf) +- [#188](https://github.com/tardis-sn/tardis/pull/188) A macro to automagically fix inline issues (@orbitfold) +- [#190](https://github.com/tardis-sn/tardis/pull/190) General/fixing unit problems (@wkerzendorf) +- [#183](https://github.com/tardis-sn/tardis/pull/183) Added colon (@sofiatti) +- [#179](https://github.com/tardis-sn/tardis/pull/179) making sure that if last_no_of_packets is not specified that it is set t... (@wkerzendorf) +- [#178](https://github.com/tardis-sn/tardis/pull/178) Atomic/fix reprepare (@wkerzendorf) +- [#177](https://github.com/tardis-sn/tardis/pull/177) added from_yaml and from_config_dict to ConfigurationNameSpace (@wkerzendorf) +- [#175](https://github.com/tardis-sn/tardis/pull/175) Fix a few problems in cmontecarlo.c (@orbitfold, @wkerzendorf) +- [#174](https://github.com/tardis-sn/tardis/pull/174) fixes added for clang compile on mac (@wkerzendorf) +- [#171](https://github.com/tardis-sn/tardis/pull/171) Fix issues when using clang compiler (issue #170) (@orbitfold) +- [#167](https://github.com/tardis-sn/tardis/pull/167) fix for #165 (@mklauser, @wkerzendorf) +- [#3](https://github.com/tardis-sn/tardis/pull/3) testing the new t_inner fix (@wkerzendorf) +- [#164](https://github.com/tardis-sn/tardis/pull/164) Config/toggle validation (@wkerzendorf) +- [#151](https://github.com/tardis-sn/tardis/pull/151) WIP Montecarlo C Rewrite (@orbitfold) +- [#160](https://github.com/tardis-sn/tardis/pull/160) how to get constant density? broken? (@wkerzendorf) + +### 0.9.2 (2014/06/12 23:37 +00:00) +- [#158](https://github.com/tardis-sn/tardis/pull/158) updated astropy_helpers version (@wkerzendorf) +- [#157](https://github.com/tardis-sn/tardis/pull/157) added yaml to pip-requirements and linked the doc pip-requirements to this (@wkerzendorf) +- [#154](https://github.com/tardis-sn/tardis/pull/154) renamed Config to ConfigurationValidator (@wkerzendorf) +- [#153](https://github.com/tardis-sn/tardis/pull/153) General mixup of 0.9.2b1 (@wkerzendorf) +- [#152](https://github.com/tardis-sn/tardis/pull/152) importing problems with new C functions? (@wkerzendorf) +- [#149](https://github.com/tardis-sn/tardis/pull/149) Edits to docs (@ssim) +- [#150](https://github.com/tardis-sn/tardis/pull/150) Montecarlo flowchart (@orbitfold) +- [#148](https://github.com/tardis-sn/tardis/pull/148) fixed config_validator log_lsun check (@wkerzendorf) +- [#142](https://github.com/tardis-sn/tardis/pull/142) WIP Porting utility functions to C (issue #131) (@orbitfold) +- [#137](https://github.com/tardis-sn/tardis/pull/137) TRAVIS passes. (@wkerzendorf) +- [#143](https://github.com/tardis-sn/tardis/pull/143) Updating configuration name space (@wkerzendorf) +- [#136](https://github.com/tardis-sn/tardis/pull/136) Updating the config reader to work with the validator (@wkerzendorf, @mklauser) +- [#145](https://github.com/tardis-sn/tardis/pull/145) Adding full spectrum generation test to TRAVIS (@wkerzendorf) +- [#144](https://github.com/tardis-sn/tardis/pull/144) Setup/switch to astropy helpers (@wkerzendorf) +- [#6](https://github.com/tardis-sn/tardis/pull/6) Pr136 (@mklauser) +- [#5](https://github.com/tardis-sn/tardis/pull/5) Pr136 (@mklauser) +- [#4](https://github.com/tardis-sn/tardis/pull/4) Pr136 (@mklauser) +- [#3](https://github.com/tardis-sn/tardis/pull/3) Pr136 (@mklauser) +- [#2](https://github.com/tardis-sn/tardis/pull/2) bug fix for the container handling. ToDo Remove remove general except in... (@mklauser) +- [#135](https://github.com/tardis-sn/tardis/pull/135) Adding documentation for d_inner and d_outer calculation (@wkerzendorf) +- [#132](https://github.com/tardis-sn/tardis/pull/132) i try to rebase the dp to the master (@mklauser) +- [#134](https://github.com/tardis-sn/tardis/pull/134) Test high temperature - outside of interpolation range of zeta factor (@wkerzendorf) +- [#129](https://github.com/tardis-sn/tardis/pull/129) Re-implement binary_search in C (@orbitfold) +- [#127](https://github.com/tardis-sn/tardis/pull/127) Docs edit only ("accessing physical quantities") (@ssim) +- [#116](https://github.com/tardis-sn/tardis/pull/116) Adding documentation for Workflow (@wkerzendorf, @ssim) +- [#112](https://github.com/tardis-sn/tardis/pull/112) NLTE fixes - discussion needed before merge - relates to #109 (@ssim, @wkerzendorf) +- [#11](https://github.com/tardis-sn/tardis/pull/11) fixing up the NLTE tests (@wkerzendorf) +- [#10](https://github.com/tardis-sn/tardis/pull/10) Plasma/fix nlte tests (@wkerzendorf) +- [#122](https://github.com/tardis-sn/tardis/pull/122) proposed restructing of binary search/line search (@ssim, @wkerzendorf, @mklauser) +- [#9](https://github.com/tardis-sn/tardis/pull/9) Issue 123two (@mklauser) +- [#124](https://github.com/tardis-sn/tardis/pull/124) updated current_public_table.rst (@wkerzendorf) +- [#7](https://github.com/tardis-sn/tardis/pull/7) Fix line search (@wkerzendorf) +- [#6](https://github.com/tardis-sn/tardis/pull/6) updated documentation to numpydoc standard (@wkerzendorf) +- [#121](https://github.com/tardis-sn/tardis/pull/121) warning added for density file readin outside tabulated range (@ssim) +- [#119](https://github.com/tardis-sn/tardis/pull/119) Fix to deal with possible problem in end of line list (@ssim) +- [#118](https://github.com/tardis-sn/tardis/pull/118) Fix for the issue #84 Pull request for fixes / documentation edits related to the profiles (@ssim, @mklauser) +- [#91](https://github.com/tardis-sn/tardis/pull/91) Documentation update to download atomic databases (@wkerzendorf) +- [#110](https://github.com/tardis-sn/tardis/pull/110) #106 suggestion for private variable names (@mklauser, @ssim) +- [#111](https://github.com/tardis-sn/tardis/pull/111) minor fixed / logger statements (@ssim) +- [#97](https://github.com/tardis-sn/tardis/pull/97) Fix for issue #81: Add warning if w > 1. (@thegyro) +- [#92](https://github.com/tardis-sn/tardis/pull/92) Adding a simple test to run a full calculation (@wkerzendorf) +- [#101](https://github.com/tardis-sn/tardis/pull/101) Fix for Issue #88: Moved test functions for tardis.util from test_config_reader (@thegyro) +- [#94](https://github.com/tardis-sn/tardis/pull/94) Fix coveralls (@wkerzendorf) +- [#87](https://github.com/tardis-sn/tardis/pull/87) Added --profile and --profiler_log_file command line arguments to enable... (@orbitfold) + +### 0.9.1 (2014/02/04 01:51 +00:00) +- [#74](https://github.com/tardis-sn/tardis/pull/74) fixed manifest to incluse ez_setup.py and setuptools_bootstrap.py. fixes... (@wkerzendorf) +- [#78](https://github.com/tardis-sn/tardis/pull/78) cosmetic fixes (@ssim) +- [#77](https://github.com/tardis-sn/tardis/pull/77) Docs edit (@ssim, @wkerzendorf) +- [#1](https://github.com/tardis-sn/tardis/pull/1) Docs fix (@wkerzendorf, @ssim) +- [#76](https://github.com/tardis-sn/tardis/pull/76) stuff with abundance profile readin (@ssim) +- [#75](https://github.com/tardis-sn/tardis/pull/75) work on gui fixing (@ssim) +- [#72](https://github.com/tardis-sn/tardis/pull/72) documentation update for release (@wkerzendorf) +- [#71](https://github.com/tardis-sn/tardis/pull/71) New configuration style (@wkerzendorf) +- [#70](https://github.com/tardis-sn/tardis/pull/70) added simple coveralls.io in there (@wkerzendorf) +- [#69](https://github.com/tardis-sn/tardis/pull/69) Atomic/atomic symbols (@wkerzendorf) +- [#67](https://github.com/tardis-sn/tardis/pull/67) Config/ascii file reader (@wkerzendorf) +- [#68](https://github.com/tardis-sn/tardis/pull/68) Tests/fixing2 (@wkerzendorf) +- [#61](https://github.com/tardis-sn/tardis/pull/61) gui fix (@ssim) +- [#60](https://github.com/tardis-sn/tardis/pull/60) General bugfixing (@wkerzendorf) +- [#59](https://github.com/tardis-sn/tardis/pull/59) General bugfixing (@wkerzendorf, @nathanielatom, @ssim, @maryampatel) +- [#54](https://github.com/tardis-sn/tardis/pull/54) Montecarlo/reflection (@ssim) +- [#52](https://github.com/tardis-sn/tardis/pull/52) Montecarlo/reflection (@ssim, @wkerzendorf, @maryampatel, @nathanielatom) +- [#51](https://github.com/tardis-sn/tardis/pull/51) Model/optimizig (@nathanielatom) +- [#50](https://github.com/tardis-sn/tardis/pull/50) Gui/span (@nathanielatom) +- [#49](https://github.com/tardis-sn/tardis/pull/49) Gui/span (@nathanielatom) +- [#48](https://github.com/tardis-sn/tardis/pull/48) Gui/span (@nathanielatom, @wkerzendorf, @maryampatel) +- [#39](https://github.com/tardis-sn/tardis/pull/39) General bugfixing (@wkerzendorf, @nathanielatom, @maryampatel) +- [#46](https://github.com/tardis-sn/tardis/pull/46) Gui/dialogue (@nathanielatom, @wkerzendorf) +- [#41](https://github.com/tardis-sn/tardis/pull/41) Gui/docs (@nathanielatom) +- [#40](https://github.com/tardis-sn/tardis/pull/40) Gui/matplotlib figure (@nathanielatom, @maryampatel) +- [#34](https://github.com/tardis-sn/tardis/pull/34) General bugfixing (@wkerzendorf) +- [#32](https://github.com/tardis-sn/tardis/pull/32) Plasma/testing2 (@maryampatel) +- [#29](https://github.com/tardis-sn/tardis/pull/29) General bugfixing looks good to me (@wkerzendorf) +- [#28](https://github.com/tardis-sn/tardis/pull/28) The same as last time but with small changes. (@mklauser) +- [#26](https://github.com/tardis-sn/tardis/pull/26) Plasma/bound free (@mklauser) +- [#25](https://github.com/tardis-sn/tardis/pull/25) Simulation/run single simulation (@wkerzendorf) + +### v0.9a (2013/02/14 21:15 +00:00) +- [#24](https://github.com/tardis-sn/tardis/pull/24) Montecarlo/extract - seems fine merging (@ssim) +- [#22](https://github.com/tardis-sn/tardis/pull/22) Montecarlo/fix convergence (@wkerzendorf, @ssim) +- [#20](https://github.com/tardis-sn/tardis/pull/20) Plasma/testing (@maryampatel) +- [#18](https://github.com/tardis-sn/tardis/pull/18) Docs/fixdocs (@maryampatel) +- [#17](https://github.com/tardis-sn/tardis/pull/17) Docs/fixdocs (@maryampatel) +- [#16](https://github.com/tardis-sn/tardis/pull/16) Doc/atomic preliminary merge (@maryampatel) +- [#14](https://github.com/tardis-sn/tardis/pull/14) Implemented all changes (@maryampatel) +- [#13](https://github.com/tardis-sn/tardis/pull/13) Changed the main documentation page (@maryampatel) \ No newline at end of file diff --git a/CHANGELOG.rst b/CHANGELOG.rst deleted file mode 100644 index c9e77b9e4f5..00000000000 --- a/CHANGELOG.rst +++ /dev/null @@ -1,788 +0,0 @@ -Change Log ----------- - -upcoming (2018/04/06 13:33 +00:00) -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - -- `#816 <https://github.com/tardis-sn/tardis/pull/816>`__ Remove old - and broken badges (@unoebauer) -- `#814 <https://github.com/tardis-sn/tardis/pull/814>`__ Fix numpydoc - problem (@wkerzendorf, @unoebauer) - -v2.0 (2018/04/05 13:03 +00:00) -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - -- `#812 <https://github.com/tardis-sn/tardis/pull/812>`__ Update of - documentation (@unoebauer) -- `#809 <https://github.com/tardis-sn/tardis/pull/809>`__ fix - dependencies for tardis conda env (#809) (@wkerzendorf) -- `#761 <https://github.com/tardis-sn/tardis/pull/761>`__ Add caching - for integrated spectrum: Fix #760 (@unoebauer) -- `#715 <https://github.com/tardis-sn/tardis/pull/715>`__ Merge - 'generate\_reference\_path' and 'reference\_path' in integration - tests (bug #672) (@rinklejain) -- `#801 <https://github.com/tardis-sn/tardis/pull/801>`__ Decay of - isotopes branch (@wkerzendorf, @vg3095, @pfreddy) -- `#806 <https://github.com/tardis-sn/tardis/pull/806>`__ Fix reference - dictionary problem (@pfreddy) -- `#803 <https://github.com/tardis-sn/tardis/pull/803>`__ include yml - files in MANIFEST (@wkerzendorf) -- `#802 <https://github.com/tardis-sn/tardis/pull/802>`__ Fix for PR - #801 (@vg3095) -- `#799 <https://github.com/tardis-sn/tardis/pull/799>`__ - tardis/plasma/standard\_plasmas.py: old database files warning - (@laudb) -- `#797 <https://github.com/tardis-sn/tardis/pull/797>`__ Minor - Updates: Fixes for #521 and #699 (@unoebauer) -- `#796 <https://github.com/tardis-sn/tardis/pull/796>`__ Prevent - pandas SettingWithCopyWarning by copying DataFrames when slicing - (@lukeshingles) -- `#795 <https://github.com/tardis-sn/tardis/pull/795>`__ Force - deactivate LaTeX in GUI - Fix #441 (@unoebauer) -- `#793 <https://github.com/tardis-sn/tardis/pull/793>`__ Add pyside to - requirements (needed for GUI) (@wkerzendorf, @unoebauer) -- `#794 <https://github.com/tardis-sn/tardis/pull/794>`__ add new - readthedocs.yml (@wkerzendorf) -- `#792 <https://github.com/tardis-sn/tardis/pull/792>`__ Fix - compatibility with networkx 2.0 (@lukeshingles) -- `#791 <https://github.com/tardis-sn/tardis/pull/791>`__ Propagate - changes to the line index into the GUI code (@yeganer) -- `#786 <https://github.com/tardis-sn/tardis/pull/786>`__ The final - carsus merge (@yeganer, @ftsamis, @mishinma) -- `#782 <https://github.com/tardis-sn/tardis/pull/782>`__ Plasma - write\_to\_tex/dot unit tests (@vg3095) -- `#781 <https://github.com/tardis-sn/tardis/pull/781>`__ Omit coverage - of test related files (@vg3095) -- `#785 <https://github.com/tardis-sn/tardis/pull/785>`__ [DOC] Update - Running tests doc (@vg3095) -- `#774 <https://github.com/tardis-sn/tardis/pull/774>`__ Replace - Comparison values in Plasma Unit Tests with reference HDF file - (@vg3095) -- `#780 <https://github.com/tardis-sn/tardis/pull/780>`__ - LevelBoltzmannFactorNLTE.from\_config is now a staticmethod - (@yeganer) -- `#778 <https://github.com/tardis-sn/tardis/pull/778>`__ Fix NLTE - (@yeganer) -- `#776 <https://github.com/tardis-sn/tardis/pull/776>`__ Fix - compatibility bug in radiative\_properties (@yeganer) -- `#779 <https://github.com/tardis-sn/tardis/pull/779>`__ Save coverage - report when tests use tardis-refdata (@vg3095) -- `#775 <https://github.com/tardis-sn/tardis/pull/775>`__ Transition - from atomic-dataset config option to tardis-refdata (@vg3095) -- `#772 <https://github.com/tardis-sn/tardis/pull/772>`__ [TEP007] - CMFGEN density parser (@vg3095) -- `#771 <https://github.com/tardis-sn/tardis/pull/771>`__ [TEP007] Add - cmfgen2tardis script (@vg3095) -- `#757 <https://github.com/tardis-sn/tardis/pull/757>`__ [TEP007] - Decay and merge isotopic abundance dataframe (@vg3095) -- `#769 <https://github.com/tardis-sn/tardis/pull/769>`__ [TEP014] - [DOC] Updated to\_hdf notebook (@vg3095) -- `#759 <https://github.com/tardis-sn/tardis/pull/759>`__ Formal - Integral: including electron scattering (@unoebauer, @yeganer) -- `#768 <https://github.com/tardis-sn/tardis/pull/768>`__ [TEP014] - Simulation HDF and deprecated to\_hdf cleanup. (@vg3095) -- `#773 <https://github.com/tardis-sn/tardis/pull/773>`__ Update - Documentation (@unoebauer) -- `#767 <https://github.com/tardis-sn/tardis/pull/767>`__ [TEP007] Docs - for isotope config (@vg3095) -- `#764 <https://github.com/tardis-sn/tardis/pull/764>`__ [TEP007] - Isotope stratified file support (@vg3095) -- `#752 <https://github.com/tardis-sn/tardis/pull/752>`__ [TEP014] - PlasmaWriterMixin (@vg3095) -- `#748 <https://github.com/tardis-sn/tardis/pull/748>`__ [TEP014] - Update Runner and Spectrum classes to use HDFWriter + Unit Tests - (@vg3095) -- `#762 <https://github.com/tardis-sn/tardis/pull/762>`__ [TEP007] - Isotope uniform config option (@vg3095) -- `#765 <https://github.com/tardis-sn/tardis/pull/765>`__ Attempt to - fix up the GUI (@ssim, @unoebauer) -- `#13 <https://github.com/tardis-sn/tardis/pull/13>`__ Introduce - proper masking for GUI (addition to PR #765) (@unoebauer) -- `#1 <https://github.com/tardis-sn/tardis/pull/1>`__ Streamline the - OMP implementation (@yeganer) -- `#756 <https://github.com/tardis-sn/tardis/pull/756>`__ [TEP007] - [WIP] Isotope Abundances class (@vg3095, @wkerzendorf) -- `#758 <https://github.com/tardis-sn/tardis/pull/758>`__ Add new - version to tardis\_env27 and add pyne (@wkerzendorf) -- `#753 <https://github.com/tardis-sn/tardis/pull/753>`__ [TEP014][DOC] - HDFWriter Documentation (@vg3095) -- `#740 <https://github.com/tardis-sn/tardis/pull/740>`__ [GSoC] Formal - integral Project (@yeganer) -- `#747 <https://github.com/tardis-sn/tardis/pull/747>`__ [TEP014] - Update Model and Density classes to use HDFWriter + Unit Tests - (@vg3095) -- `#750 <https://github.com/tardis-sn/tardis/pull/750>`__ [TEP005][QOL] - Add MontecarloRunner.spectrum\_integrated (@yeganer) -- `#749 <https://github.com/tardis-sn/tardis/pull/749>`__ [TEP014] - Change name of HDFWriter to HDFWriterMixin (@vg3095) -- `#745 <https://github.com/tardis-sn/tardis/pull/745>`__ [TEP005][DOC] - Documentation (@yeganer) -- `#751 <https://github.com/tardis-sn/tardis/pull/751>`__ [QOL] Add - default axis to TARDISSpectrum.plot (@yeganer) -- `#743 <https://github.com/tardis-sn/tardis/pull/743>`__ Fix bug in - plasma (@yeganer) -- `#744 <https://github.com/tardis-sn/tardis/pull/744>`__ [TEP014] - Added HDFWriter class + Unit Tests (@vg3095) -- `#746 <https://github.com/tardis-sn/tardis/pull/746>`__ - [TEP005][CONFIG] Prevent incompatible configurations (@yeganer) -- `#741 <https://github.com/tardis-sn/tardis/pull/741>`__ Add unit - tests for the formal integral (@yeganer) -- `#742 <https://github.com/tardis-sn/tardis/pull/742>`__ Fix clash in - RTD dependencies (@yeganer) -- `#735 <https://github.com/tardis-sn/tardis/pull/735>`__ Move common - ctest fixtures into conftest.py (@yeganer) -- `#729 <https://github.com/tardis-sn/tardis/pull/729>`__ Refactor - spectrum (@yeganer) -- `#730 <https://github.com/tardis-sn/tardis/pull/730>`__ Fix - test\_plasma\_simple not skipping properly (@yeganer) -- `#712 <https://github.com/tardis-sn/tardis/pull/712>`__ Colorize - Logger (@vg3095) -- `#718 <https://github.com/tardis-sn/tardis/pull/718>`__ Unit test for - untested method of montecarlo simulation code (@suyashgupta20) -- `#724 <https://github.com/tardis-sn/tardis/pull/724>`__ Rebase PR - #678 (@yeganer) -- `#709 <https://github.com/tardis-sn/tardis/pull/709>`__ Add note - about broken GUI to docu (@unoebauer) -- `#708 <https://github.com/tardis-sn/tardis/pull/708>`__ Add new - installation instructions (@wkerzendorf) -- `#704 <https://github.com/tardis-sn/tardis/pull/704>`__ Fix ignoring - model tests (@ftsamis) -- `#700 <https://github.com/tardis-sn/tardis/pull/700>`__ Add - contributing guidelines (@wkerzendorf) -- `#686 <https://github.com/tardis-sn/tardis/pull/686>`__ converted - spectrum\_frequency (@chinmay0301) -- `#696 <https://github.com/tardis-sn/tardis/pull/696>`__ Add missing - diagnostics property to runner's to\_hdf list (@unoebauer) -- `#694 <https://github.com/tardis-sn/tardis/pull/694>`__ Significantly - reduce peak memory usage when vpacket logging is enabled (@ftsamis) -- `#682 <https://github.com/tardis-sn/tardis/pull/682>`__ Import - montecarlo.base in the **init** module of the package. (@ftsamis) -- `#670 <https://github.com/tardis-sn/tardis/pull/670>`__ Integrate - continuum interactions into cmontecarlo (@chvogl) -- `#652 <https://github.com/tardis-sn/tardis/pull/652>`__ [TEP006] - Aggregate TARDIS restructure and configuration system cleanup - (@ftsamis) -- `#677 <https://github.com/tardis-sn/tardis/pull/677>`__ Update link - to tardis\_example.yml in documentation - Fix #676 (@unoebauer) -- `#674 <https://github.com/tardis-sn/tardis/pull/674>`__ Change - matplotlib backend - fix test\_integration remote plotting issue - (@unoebauer) -- `#664 <https://github.com/tardis-sn/tardis/pull/664>`__ Kd final test - (@wkerzendorf, @kdexd, @yeganer) -- `#21 <https://github.com/tardis-sn/tardis/pull/21>`__ fKd final test - (@yeganer) -- `#668 <https://github.com/tardis-sn/tardis/pull/668>`__ change to - tardis atom data on git lfs (@wkerzendorf) -- `#666 <https://github.com/tardis-sn/tardis/pull/666>`__ Remove News - from main TARDIS github page (@unoebauer) -- `#667 <https://github.com/tardis-sn/tardis/pull/667>`__ Update SOCIS - and GSOC students credits (@unoebauer) -- `#665 <https://github.com/tardis-sn/tardis/pull/665>`__ Add to\_hdf - compression (@yeganer) -- `#663 <https://github.com/tardis-sn/tardis/pull/663>`__ Develop - (@kdexd) -- `#657 <https://github.com/tardis-sn/tardis/pull/657>`__ Require - pyyaml 3.12 (@ftsamis) -- `#659 <https://github.com/tardis-sn/tardis/pull/659>`__ Update - installation docs (@ftsamis) -- `#653 <https://github.com/tardis-sn/tardis/pull/653>`__ Facility to - provide per-setup atom data as well as save report locally. (@kdexd) -- `#641 <https://github.com/tardis-sn/tardis/pull/641>`__ Fix detailed - radiative rates (@yeganer) -- `#642 <https://github.com/tardis-sn/tardis/pull/642>`__ Use - pytest-html==1.10.0, modify DokuReport class accordingly. (@kdexd) -- `#630 <https://github.com/tardis-sn/tardis/pull/630>`__ - [IntegrationTests] Overview page on Dokuwiki. Running the integration - tests will update an overview page on DokuWiki. (@kdexd) -- `#620 <https://github.com/tardis-sn/tardis/pull/620>`__ Runner script - to automate execution of integration tests. (@kdexd) -- `#628 <https://github.com/tardis-sn/tardis/pull/628>`__ Remove - exponent property from yaml files with exponential density (@ftsamis) -- `#626 <https://github.com/tardis-sn/tardis/pull/626>`__ Revert "Add - exponent as a property for exponential density" (@ftsamis) -- `#542 <https://github.com/tardis-sn/tardis/pull/542>`__ Updates to He - NLTE treatment. (@aoifeboyle) -- `#612 <https://github.com/tardis-sn/tardis/pull/612>`__ Add facility - to generate and accept HDF files as reference data for Integration - Tests. (@kdexd) -- `#614 <https://github.com/tardis-sn/tardis/pull/614>`__ Omit the - integration\_tests when running coveralls (@yeganer) -- `#619 <https://github.com/tardis-sn/tardis/pull/619>`__ Fixed - incorrect name in error message (@Tobychev) -- `#618 <https://github.com/tardis-sn/tardis/pull/618>`__ to\_hdf: If - only the last run is stored, do not add a counter in the name - (@ftsamis) -- `#617 <https://github.com/tardis-sn/tardis/pull/617>`__ Add a to\_hdf - method on TARDISSpectrum (@ftsamis) -- `#600 <https://github.com/tardis-sn/tardis/pull/600>`__ Parametrize - the Slow Test class with two setups. (@kdexd) -- `#613 <https://github.com/tardis-sn/tardis/pull/613>`__ Fix bug in - montecarlo.pyx (@yeganer) -- `#595 <https://github.com/tardis-sn/tardis/pull/595>`__ Line - absorption rate estimator (@Tobychev) -- `#606 <https://github.com/tardis-sn/tardis/pull/606>`__ Merge to\_hdf - (@ftsamis, @wkerzendorf) -- `#585 <https://github.com/tardis-sn/tardis/pull/585>`__ [TEP002] Add - a to\_hdf method to the MontecarloRunner (#585) (@ftsamis) -- `#597 <https://github.com/tardis-sn/tardis/pull/597>`__ Use - abundances, densities filepaths relative to w7 config file. (@kdexd) -- `#569 <https://github.com/tardis-sn/tardis/pull/569>`__ Added a conda - environment for tardis (@wkerzendorf) -- `#565 <https://github.com/tardis-sn/tardis/pull/565>`__ Change the - way AtomData quantities are initialized (@yeganer) -- `#599 <https://github.com/tardis-sn/tardis/pull/599>`__ Update the - tardis\_example tar file provided in the documentation. (@ftsamis) -- `#598 <https://github.com/tardis-sn/tardis/pull/598>`__ Fix - convergence handling in run\_legacy\_simulation - fix issue #593 - (@unoebauer) -- `#590 <https://github.com/tardis-sn/tardis/pull/590>`__ Link images - of comparison plots in DokuReport using hookwrapper. (@kdexd) -- `#591 <https://github.com/tardis-sn/tardis/pull/591>`__ Fix path of - CSS and JS files used in html report. (@kdexd) -- `#594 <https://github.com/tardis-sn/tardis/pull/594>`__ Provide - tardis.yaml\_load shortcut (@yeganer) -- `#592 <https://github.com/tardis-sn/tardis/pull/592>`__ Fix virt - energy (@yeganer) -- `#583 <https://github.com/tardis-sn/tardis/pull/583>`__ Subclass - pytest-html's HTMLReport to DokuReport class for report generation - and upload (@kdexd) -- `#587 <https://github.com/tardis-sn/tardis/pull/587>`__ Move the - three spectra attributes from Radial1DModel to MontecarloRunner - (@ftsamis) -- `#578 <https://github.com/tardis-sn/tardis/pull/578>`__ Shift slow - test related pytest hooks in lower level conftest.py (#578) (@kdexd) -- `#581 <https://github.com/tardis-sn/tardis/pull/581>`__ Update - several files to match package\_template (@yeganer) -- `#576 <https://github.com/tardis-sn/tardis/pull/576>`__ - [config-system] Validator rewrite: Use jsonschema (@ftsamis) -- `#575 <https://github.com/tardis-sn/tardis/pull/575>`__ Replace - misused calls to yaml.load with a helper function. (@ftsamis) -- `#570 <https://github.com/tardis-sn/tardis/pull/570>`__ Enable - generation of html report of integration tests, and upload to - dokuwiki. (@kdexd) -- `#574 <https://github.com/tardis-sn/tardis/pull/574>`__ - tardis/base.py: Remove duplicate code from run\_tardis (@ftsamis) -- `#573 <https://github.com/tardis-sn/tardis/pull/573>`__ io/util.py - (YAMLLoader): Use OrderedDict to store loaded YAML (@ftsamis) -- `#572 <https://github.com/tardis-sn/tardis/pull/572>`__ Change the - way YAMLLoader resolves some properties (@ftsamis) -- `#532 <https://github.com/tardis-sn/tardis/pull/532>`__ Documentation - overhaul (@unoebauer, @kdexd, @chvogl) -- `#571 <https://github.com/tardis-sn/tardis/pull/571>`__ - data/tardis\_config\_definition.yml: Set the exponent property as - mandatory when density is exponential. (#571) (@ftsamis) -- `#566 <https://github.com/tardis-sn/tardis/pull/566>`__ Initial - laydown of comparison plots for TestW7. (#566) (@kdexd) -- `#567 <https://github.com/tardis-sn/tardis/pull/567>`__ Accept - keyword arguments for Configuration.from\_yaml (@yeganer) -- `#561 <https://github.com/tardis-sn/tardis/pull/561>`__ TestW7: - Assertions for spectrum quantities, fixture for handling baseline - data. (@kdexd) -- `#515 <https://github.com/tardis-sn/tardis/pull/515>`__ - [config-system] Add a custom YAML Loader to parse astropy quantities - (@ftsamis) -- `#555 <https://github.com/tardis-sn/tardis/pull/555>`__ Use pytest's - monkeypatch.chdir to change the working directory in the - config\_reader tests (@ftsamis, @lukeshingles) -- `#558 <https://github.com/tardis-sn/tardis/pull/558>`__ Integration - Test class for Stratified W7 setup. (@kdexd) -- `#557 <https://github.com/tardis-sn/tardis/pull/557>`__ Enable - skipping slow tests. (@kdexd) -- `#544 <https://github.com/tardis-sn/tardis/pull/544>`__ Continue - cmontecarlo tests refactor. Extend #530. (@kdexd) -- `#543 <https://github.com/tardis-sn/tardis/pull/543>`__ Fix issue - #535: Treat rel. paths inside config relative to the config file - (@lukeshingles, @ftsamis) -- `#1 <https://github.com/tardis-sn/tardis/pull/1>`__ Write tests for - the issue #535 fix. (@ftsamis) -- `#551 <https://github.com/tardis-sn/tardis/pull/551>`__ Add SOCIS - 2016 advertisement (@unoebauer) -- `#547 <https://github.com/tardis-sn/tardis/pull/547>`__ Fix Issue - #548 (@kdexd) -- `#545 <https://github.com/tardis-sn/tardis/pull/545>`__ added mailmap - to compile the commits for each person (#545) (@wkerzendorf) -- `#539 <https://github.com/tardis-sn/tardis/pull/539>`__ Adding OSX to - our travis build (#539) (@wkerzendorf) -- `#541 <https://github.com/tardis-sn/tardis/pull/541>`__ Move progress - bar update after calculation (#541) (@yeganer) -- `#540 <https://github.com/tardis-sn/tardis/pull/540>`__ Mirroring C - enums in Python for CMontecarlo tests. (@kdexd) -- `#538 <https://github.com/tardis-sn/tardis/pull/538>`__ Upgrading to - the new Readthedocs infrastructure (#538) (@wkerzendorf) -- `#530 <https://github.com/tardis-sn/tardis/pull/530>`__ Refactor - cmontecarlo testing framework (@kdexd) -- `#537 <https://github.com/tardis-sn/tardis/pull/537>`__ Ignore - invalid OpenMP nthreads values (#537) (@yeganer) -- `#533 <https://github.com/tardis-sn/tardis/pull/533>`__ Remove - rpacket.recently\_crossed\_boundary flag (@yeganer) -- `#514 <https://github.com/tardis-sn/tardis/pull/514>`__ Performance - (@yeganer) -- `#531 <https://github.com/tardis-sn/tardis/pull/531>`__ Organize - headers in C-Extension (@yeganer) -- `#526 <https://github.com/tardis-sn/tardis/pull/526>`__ Docs: Include - conda-requirements in installation.rst (@kdexd) -- `#519 <https://github.com/tardis-sn/tardis/pull/519>`__ - Documentation:Installation modify command (@yeganer) -- `#510 <https://github.com/tardis-sn/tardis/pull/510>`__ Updates - requirements to solve libgfortran error. Fixes #509 (@kdexd) -- `#495 <https://github.com/tardis-sn/tardis/pull/495>`__ Fix energy - conservation (@unoebauer) -- `#486 <https://github.com/tardis-sn/tardis/pull/486>`__ Bugfix - radiative rates type detailed (@chvogl, @unoebauer) -- `#488 <https://github.com/tardis-sn/tardis/pull/488>`__ Fix - indentation in c extension (@yeganer) -- `#494 <https://github.com/tardis-sn/tardis/pull/494>`__ Fix #493 - (@yeganer) -- `#1 <https://github.com/tardis-sn/tardis/pull/1>`__ Add simple test - for j\_blue\_estimator (@unoebauer) -- `#491 <https://github.com/tardis-sn/tardis/pull/491>`__ Include IDE - specific auto-generated files in .gitignore. Fixes #490 (@kdexd) -- `#485 <https://github.com/tardis-sn/tardis/pull/485>`__ Montecarlo - progress (@yeganer) -- `#457 <https://github.com/tardis-sn/tardis/pull/457>`__ Fix Issue - #454 (@yeganer) -- `#484 <https://github.com/tardis-sn/tardis/pull/484>`__ Minor - improvement of vpacket logging scheme (@unoebauer) -- `#479 <https://github.com/tardis-sn/tardis/pull/479>`__ added units - to test\_simulation.py (@mishinma) -- `#469 <https://github.com/tardis-sn/tardis/pull/469>`__ Changed the - Link for AstroPy's dev workflow (@souravsingh) -- `#481 <https://github.com/tardis-sn/tardis/pull/481>`__ Introcuding - safe\_malloc and safe\_realloc macros: fixes #480 (@unoebauer) -- `#475 <https://github.com/tardis-sn/tardis/pull/475>`__ Reorganize - import statements in atomic.py (@Pratik151) -- `#471 <https://github.com/tardis-sn/tardis/pull/471>`__ Quickfix to - solve Issue #455 and #464 (@yeganer) -- `#472 <https://github.com/tardis-sn/tardis/pull/472>`__ fixed build - of documentation on readthedocs (@wkerzendorf) -- `#461 <https://github.com/tardis-sn/tardis/pull/461>`__ Bugfix test - cmontecarlo (@yeganer) -- `#452 <https://github.com/tardis-sn/tardis/pull/452>`__ Build fix and - nthreads fix - fixes #356 (@unoebauer) -- `#450 <https://github.com/tardis-sn/tardis/pull/450>`__ Checking for - zero-volume cells: Fixes issue #79 (@unoebauer) -- `#449 <https://github.com/tardis-sn/tardis/pull/449>`__ added test to - verify virtual spectrum (@unoebauer) -- `#446 <https://github.com/tardis-sn/tardis/pull/446>`__ calculate - virtual spectrum independently of vpacket loggin - fixes #445 - (@unoebauer) -- `#440 <https://github.com/tardis-sn/tardis/pull/440>`__ started - addressing issue #436 (@unoebauer) -- `#426 <https://github.com/tardis-sn/tardis/pull/426>`__ Simulation - - restructure (@wkerzendorf) -- `#434 <https://github.com/tardis-sn/tardis/pull/434>`__ updated the - .travis.yml file to do a rehash before executing conda (@wkerzendorf) -- `#433 <https://github.com/tardis-sn/tardis/pull/433>`__ Optional - vpacket logging WIP (@tardis-sn) -- `#425 <https://github.com/tardis-sn/tardis/pull/425>`__ Updated - nlte.rst (@souravsingh) -- `#424 <https://github.com/tardis-sn/tardis/pull/424>`__ added a new - requirement for astropy (@wkerzendorf) -- `#1 <https://github.com/tardis-sn/tardis/pull/1>`__ Update nlte.rst - (@souravsingh) -- `#375 <https://github.com/tardis-sn/tardis/pull/375>`__ made sure - that atomic does not reinsert the index into the dataframe - (@wkerzendorf) -- `#420 <https://github.com/tardis-sn/tardis/pull/420>`__ Memory issue - (@wkerzendorf) -- `#416 <https://github.com/tardis-sn/tardis/pull/416>`__ added new - version requirements for pandas and astropy (@wkerzendorf) -- `#414 <https://github.com/tardis-sn/tardis/pull/414>`__ Improvements - to He approximation. (@aoifeboyle) -- `#413 <https://github.com/tardis-sn/tardis/pull/413>`__ WIP - Docstrings (@wkerzendorf) -- `#412 <https://github.com/tardis-sn/tardis/pull/412>`__ Fix for zeta - issues. (@wkerzendorf) -- `#3 <https://github.com/tardis-sn/tardis/pull/3>`__ Plasma/ab zeta - fix (@wkerzendorf) -- `#410 <https://github.com/tardis-sn/tardis/pull/410>`__ WIP: Cleaning - up plasma (@wkerzendorf) -- `#399 <https://github.com/tardis-sn/tardis/pull/399>`__ Plasma - optimization (@wkerzendorf, @mreineck) -- `#2 <https://github.com/tardis-sn/tardis/pull/2>`__ fix for chi\_0 - problem (@wkerzendorf) -- `#19 <https://github.com/tardis-sn/tardis/pull/19>`__ Plasma - optimisation fix. (@aoifeboyle) -- `#404 <https://github.com/tardis-sn/tardis/pull/404>`__ - Montecarlo/new packet source (@wkerzendorf) -- `#407 <https://github.com/tardis-sn/tardis/pull/407>`__ Organising of - plasma base files. (@aoifeboyle) -- `#405 <https://github.com/tardis-sn/tardis/pull/405>`__ Pandas - macroatom issue fix (@wkerzendorf) -- `#406 <https://github.com/tardis-sn/tardis/pull/406>`__ Numerical He - NLTE. (@aoifeboyle) -- `#401 <https://github.com/tardis-sn/tardis/pull/401>`__ Alternative - fix for issue #393 (@mreineck) -- `#398 <https://github.com/tardis-sn/tardis/pull/398>`__ More cleanups - (@mreineck) -- `#400 <https://github.com/tardis-sn/tardis/pull/400>`__ Change to - NLTE properties (@aoifeboyle) -- `#397 <https://github.com/tardis-sn/tardis/pull/397>`__ - Montecarlo/memoryview (@wkerzendorf) -- `#396 <https://github.com/tardis-sn/tardis/pull/396>`__ added - virt\_packet properties to to\_hdf5 list (Kromer plot) (@unoebauer) -- `#391 <https://github.com/tardis-sn/tardis/pull/391>`__ More work on - cmontecarlo.c and the unit tests (@mreineck) -- `#364 <https://github.com/tardis-sn/tardis/pull/364>`__ added tardis - stats (@wkerzendorf) -- `#392 <https://github.com/tardis-sn/tardis/pull/392>`__ Consistency - between old virtual packet arrays and new ones introduced in PR 384 - (@unoebauer) -- `#389 <https://github.com/tardis-sn/tardis/pull/389>`__ changes to - address issue #388 (@mreineck) -- `#386 <https://github.com/tardis-sn/tardis/pull/386>`__ improve - inlining specifications and fix a few problems (@mreineck) -- `#384 <https://github.com/tardis-sn/tardis/pull/384>`__ Minor changes - in Monte Carlo and model part for Kromer plots (@unoebauer) -- `#374 <https://github.com/tardis-sn/tardis/pull/374>`__ WIP: Helium - approx. (@wkerzendorf) -- `#382 <https://github.com/tardis-sn/tardis/pull/382>`__ Improvements - to plasma graph (@aoifeboyle) -- `#381 <https://github.com/tardis-sn/tardis/pull/381>`__ Fix to plasma - issue with GUI. (@aoifeboyle) -- `#379 <https://github.com/tardis-sn/tardis/pull/379>`__ Fix of - to\_hdf5. (@aoifeboyle) -- `#377 <https://github.com/tardis-sn/tardis/pull/377>`__ Plasma static - methods (@aoifeboyle) -- `#373 <https://github.com/tardis-sn/tardis/pull/373>`__ Removing - test\_plasma\_nlte.py. (@aoifeboyle) -- `#372 <https://github.com/tardis-sn/tardis/pull/372>`__ Correcting - some old plasma tests. (@aoifeboyle) -- `#304 <https://github.com/tardis-sn/tardis/pull/304>`__ Plasma - restructure (@wkerzendorf) -- `#370 <https://github.com/tardis-sn/tardis/pull/370>`__ Removed some - tests temporarily. (@aoifeboyle) -- `#369 <https://github.com/tardis-sn/tardis/pull/369>`__ Removed - import plasma\_array (@aoifeboyle) -- `#368 <https://github.com/tardis-sn/tardis/pull/368>`__ Fixing plasma - merge (@aoifeboyle) -- `#367 <https://github.com/tardis-sn/tardis/pull/367>`__ preparing for - the new container archictecture used by travis (@wkerzendorf) -- `#365 <https://github.com/tardis-sn/tardis/pull/365>`__ LTE Plasma - Test (@aoifeboyle) -- `#361 <https://github.com/tardis-sn/tardis/pull/361>`__ Added - formulae to graph. (@aoifeboyle) -- `#360 <https://github.com/tardis-sn/tardis/pull/360>`__ - Rebasedvirtrunner (@orbitfold, @wkerzendorf) -- `#362 <https://github.com/tardis-sn/tardis/pull/362>`__ Adjusted - stimulated emission factor for NLTE. (@aoifeboyle) -- `#355 <https://github.com/tardis-sn/tardis/pull/355>`__ Add - with-openmp to develop (@orbitfold) -- `#354 <https://github.com/tardis-sn/tardis/pull/354>`__ added print - statement for openmp (@wkerzendorf) -- `#350 <https://github.com/tardis-sn/tardis/pull/350>`__ - Tidying/Testing/Documenting Plasma (@aoifeboyle) -- `#352 <https://github.com/tardis-sn/tardis/pull/352>`__ Attempt at - solution. (@aoifeboyle) -- `#330 <https://github.com/tardis-sn/tardis/pull/330>`__ [GSoC 2015 - WIP] Testing other montecarlo functions (@kaushik94) -- `#347 <https://github.com/tardis-sn/tardis/pull/347>`__ NLTE - (@aoifeboyle) -- `#325 <https://github.com/tardis-sn/tardis/pull/325>`__ Bound-free - interactions (@chvogl) -- `#344 <https://github.com/tardis-sn/tardis/pull/344>`__ - Plasma/multiple outputs (@aoifeboyle) -- `#346 <https://github.com/tardis-sn/tardis/pull/346>`__ linked the - plasma documentation again (@wkerzendorf) -- `#338 <https://github.com/tardis-sn/tardis/pull/338>`__ OpenMP WIP - (@orbitfold) -- `#343 <https://github.com/tardis-sn/tardis/pull/343>`__ Plasma/multi - output (@wkerzendorf) -- `#17 <https://github.com/tardis-sn/tardis/pull/17>`__ Fixes. - (@aoifeboyle) -- `#324 <https://github.com/tardis-sn/tardis/pull/324>`__ Gui package - (WIP) (@gautam1168) -- `#327 <https://github.com/tardis-sn/tardis/pull/327>`__ [GSoC 2015 - MRG] Testing getters setters (@kaushik94) -- `#322 <https://github.com/tardis-sn/tardis/pull/322>`__ Updating the - gui documentation. (@gautam1168) -- `#296 <https://github.com/tardis-sn/tardis/pull/296>`__ Gui with - menubars(WIP) (@gautam1168) -- `#320 <https://github.com/tardis-sn/tardis/pull/320>`__ virtual - packets frequency cut (@unoebauer) -- `#314 <https://github.com/tardis-sn/tardis/pull/314>`__ Installation - FAQ (@wkerzendorf) -- `#310 <https://github.com/tardis-sn/tardis/pull/310>`__ A more - detailed description of the montecarlo process (@wkerzendorf) -- `#301 <https://github.com/tardis-sn/tardis/pull/301>`__ [GSoC 2015 - MRG] Restructuring Montecarlo (@kaushik94) -- `#234 <https://github.com/tardis-sn/tardis/pull/234>`__ Removing - usage of yield in test\_utils.py (@kaushik94) -- `#299 <https://github.com/tardis-sn/tardis/pull/299>`__ Test of - model\_reader.py (@wkerzendorf, @ssim) -- `#288 <https://github.com/tardis-sn/tardis/pull/288>`__ -fixed - discrepancy concerning hold\_iterations (@unoebauer) -- `#286 <https://github.com/tardis-sn/tardis/pull/286>`__ Proposal for - a new to HD5 function. (@mklauser) -- `#283 <https://github.com/tardis-sn/tardis/pull/283>`__ fixed the - reader for the older Paper1 format yaml files (@wkerzendorf) -- `#269 <https://github.com/tardis-sn/tardis/pull/269>`__ Miscellaneous - README changes (@iKevinY) -- `#251 <https://github.com/tardis-sn/tardis/pull/251>`__ gui.py and - running.rst edited for PyQt4 and PySide (@gautam1168) -- `#250 <https://github.com/tardis-sn/tardis/pull/250>`__ Docs/pip reqs - (@wkerzendorf) -- `#244 <https://github.com/tardis-sn/tardis/pull/244>`__ added - coverage back (@wkerzendorf) -- `#240 <https://github.com/tardis-sn/tardis/pull/240>`__ rename of - pip-requirements to conda-requirements (@wkerzendorf) -- `#225 <https://github.com/tardis-sn/tardis/pull/225>`__ Test added in - test\_atomic.py (@vaibhav4595) -- `#223 <https://github.com/tardis-sn/tardis/pull/223>`__ Update - git\_workflow.rst (@ujjwalwahi) - -1.0rc3 (2015/03/03 12:54 +00:00) -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - -- `#219 <https://github.com/tardis-sn/tardis/pull/219>`__ fixing - run\_tardis (@wkerzendorf) - -1.0.dev1419 (2015/02/19 13:58 +00:00) -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - -- `#218 <https://github.com/tardis-sn/tardis/pull/218>`__ Docs/anaconda - install (@wkerzendorf) -- `#217 <https://github.com/tardis-sn/tardis/pull/217>`__ Docs/fixing - pip requirements (@wkerzendorf) -- `#216 <https://github.com/tardis-sn/tardis/pull/216>`__ some fixes to - the gui so it works with pyside (@wkerzendorf) -- `#214 <https://github.com/tardis-sn/tardis/pull/214>`__ Preparing the - docs for V1 (@wkerzendorf) -- `#210 <https://github.com/tardis-sn/tardis/pull/210>`__ a restructure - of the C-file file structure (@wkerzendorf, @mklauser) -- `#7 <https://github.com/tardis-sn/tardis/pull/7>`__ include .c in - montecarlo/src/ for the randomkit files (@mklauser) -- `#209 <https://github.com/tardis-sn/tardis/pull/209>`__ - Testing/pandas version info (@wkerzendorf) -- `#205 <https://github.com/tardis-sn/tardis/pull/205>`__ As simpler - ``run_tardis`` (@wkerzendorf) -- `#206 <https://github.com/tardis-sn/tardis/pull/206>`__ Minor but - critical fix to binary search (reverse) (@ssim) -- `#199 <https://github.com/tardis-sn/tardis/pull/199>`__ Gnuify - cmontecarlo.c and cmontecarlo.h files (@orbitfold) -- `#203 <https://github.com/tardis-sn/tardis/pull/203>`__ - Docs/reporting bugs (@wkerzendorf) -- `#201 <https://github.com/tardis-sn/tardis/pull/201>`__ A critical - warning was added to the model indicating that no packet has left the - simulation through the outer boundary. (@mklauser) -- `#200 <https://github.com/tardis-sn/tardis/pull/200>`__ added a new - location for the atomic data. (@wkerzendorf) -- `#196 <https://github.com/tardis-sn/tardis/pull/196>`__ New binary - search added (@mklauser) -- `#169 <https://github.com/tardis-sn/tardis/pull/169>`__ fix for #168 - (@mklauser) -- `#194 <https://github.com/tardis-sn/tardis/pull/194>`__ Setup/fix - requirements (@wkerzendorf) -- `#188 <https://github.com/tardis-sn/tardis/pull/188>`__ A macro to - automagically fix inline issues (@orbitfold) -- `#190 <https://github.com/tardis-sn/tardis/pull/190>`__ - General/fixing unit problems (@wkerzendorf) -- `#183 <https://github.com/tardis-sn/tardis/pull/183>`__ Added colon - (@sofiatti) -- `#179 <https://github.com/tardis-sn/tardis/pull/179>`__ making sure - that if last\_no\_of\_packets is not specified that it is set t... - (@wkerzendorf) -- `#178 <https://github.com/tardis-sn/tardis/pull/178>`__ Atomic/fix - reprepare (@wkerzendorf) -- `#177 <https://github.com/tardis-sn/tardis/pull/177>`__ added - from\_yaml and from\_config\_dict to ConfigurationNameSpace - (@wkerzendorf) -- `#175 <https://github.com/tardis-sn/tardis/pull/175>`__ Fix a few - problems in cmontecarlo.c (@orbitfold, @wkerzendorf) -- `#174 <https://github.com/tardis-sn/tardis/pull/174>`__ fixes added - for clang compile on mac (@wkerzendorf) -- `#171 <https://github.com/tardis-sn/tardis/pull/171>`__ Fix issues - when using clang compiler (issue #170) (@orbitfold) -- `#167 <https://github.com/tardis-sn/tardis/pull/167>`__ fix for #165 - (@mklauser, @wkerzendorf) -- `#3 <https://github.com/tardis-sn/tardis/pull/3>`__ testing the new - t\_inner fix (@wkerzendorf) -- `#164 <https://github.com/tardis-sn/tardis/pull/164>`__ Config/toggle - validation (@wkerzendorf) -- `#151 <https://github.com/tardis-sn/tardis/pull/151>`__ WIP - Montecarlo C Rewrite (@orbitfold) -- `#160 <https://github.com/tardis-sn/tardis/pull/160>`__ how to get - constant density? broken? (@wkerzendorf) - -0.9.2 (2014/06/12 23:37 +00:00) -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - -- `#158 <https://github.com/tardis-sn/tardis/pull/158>`__ updated - astropy\_helpers version (@wkerzendorf) -- `#157 <https://github.com/tardis-sn/tardis/pull/157>`__ added yaml to - pip-requirements and linked the doc pip-requirements to this - (@wkerzendorf) -- `#154 <https://github.com/tardis-sn/tardis/pull/154>`__ renamed - Config to ConfigurationValidator (@wkerzendorf) -- `#153 <https://github.com/tardis-sn/tardis/pull/153>`__ General mixup - of 0.9.2b1 (@wkerzendorf) -- `#152 <https://github.com/tardis-sn/tardis/pull/152>`__ importing - problems with new C functions? (@wkerzendorf) -- `#149 <https://github.com/tardis-sn/tardis/pull/149>`__ Edits to docs - (@ssim) -- `#150 <https://github.com/tardis-sn/tardis/pull/150>`__ Montecarlo - flowchart (@orbitfold) -- `#148 <https://github.com/tardis-sn/tardis/pull/148>`__ fixed - config\_validator log\_lsun check (@wkerzendorf) -- `#142 <https://github.com/tardis-sn/tardis/pull/142>`__ WIP Porting - utility functions to C (issue #131) (@orbitfold) -- `#137 <https://github.com/tardis-sn/tardis/pull/137>`__ TRAVIS - passes. (@wkerzendorf) -- `#143 <https://github.com/tardis-sn/tardis/pull/143>`__ Updating - configuration name space (@wkerzendorf) -- `#136 <https://github.com/tardis-sn/tardis/pull/136>`__ Updating the - config reader to work with the validator (@wkerzendorf, @mklauser) -- `#145 <https://github.com/tardis-sn/tardis/pull/145>`__ Adding full - spectrum generation test to TRAVIS (@wkerzendorf) -- `#144 <https://github.com/tardis-sn/tardis/pull/144>`__ Setup/switch - to astropy helpers (@wkerzendorf) -- `#6 <https://github.com/tardis-sn/tardis/pull/6>`__ Pr136 (@mklauser) -- `#5 <https://github.com/tardis-sn/tardis/pull/5>`__ Pr136 (@mklauser) -- `#4 <https://github.com/tardis-sn/tardis/pull/4>`__ Pr136 (@mklauser) -- `#3 <https://github.com/tardis-sn/tardis/pull/3>`__ Pr136 (@mklauser) -- `#2 <https://github.com/tardis-sn/tardis/pull/2>`__ bug fix for the - container handling. ToDo Remove remove general except in... - (@mklauser) -- `#135 <https://github.com/tardis-sn/tardis/pull/135>`__ Adding - documentation for d\_inner and d\_outer calculation (@wkerzendorf) -- `#132 <https://github.com/tardis-sn/tardis/pull/132>`__ i try to - rebase the dp to the master (@mklauser) -- `#134 <https://github.com/tardis-sn/tardis/pull/134>`__ Test high - temperature - outside of interpolation range of zeta factor - (@wkerzendorf) -- `#129 <https://github.com/tardis-sn/tardis/pull/129>`__ Re-implement - binary\_search in C (@orbitfold) -- `#127 <https://github.com/tardis-sn/tardis/pull/127>`__ Docs edit - only ("accessing physical quantities") (@ssim) -- `#116 <https://github.com/tardis-sn/tardis/pull/116>`__ Adding - documentation for Workflow (@wkerzendorf, @ssim) -- `#112 <https://github.com/tardis-sn/tardis/pull/112>`__ NLTE fixes - - discussion needed before merge - relates to #109 (@ssim, - @wkerzendorf) -- `#11 <https://github.com/tardis-sn/tardis/pull/11>`__ fixing up the - NLTE tests (@wkerzendorf) -- `#10 <https://github.com/tardis-sn/tardis/pull/10>`__ Plasma/fix nlte - tests (@wkerzendorf) -- `#122 <https://github.com/tardis-sn/tardis/pull/122>`__ proposed - restructing of binary search/line search (@ssim, @wkerzendorf, - @mklauser) -- `#9 <https://github.com/tardis-sn/tardis/pull/9>`__ Issue 123two - (@mklauser) -- `#124 <https://github.com/tardis-sn/tardis/pull/124>`__ updated - current\_public\_table.rst (@wkerzendorf) -- `#7 <https://github.com/tardis-sn/tardis/pull/7>`__ Fix line search - (@wkerzendorf) -- `#6 <https://github.com/tardis-sn/tardis/pull/6>`__ updated - documentation to numpydoc standard (@wkerzendorf) -- `#121 <https://github.com/tardis-sn/tardis/pull/121>`__ warning added - for density file readin outside tabulated range (@ssim) -- `#119 <https://github.com/tardis-sn/tardis/pull/119>`__ Fix to deal - with possible problem in end of line list (@ssim) -- `#118 <https://github.com/tardis-sn/tardis/pull/118>`__ Fix for the - issue #84 Pull request for fixes / documentation edits related to the - profiles (@ssim, @mklauser) -- `#91 <https://github.com/tardis-sn/tardis/pull/91>`__ Documentation - update to download atomic databases (@wkerzendorf) -- `#110 <https://github.com/tardis-sn/tardis/pull/110>`__ #106 - suggestion for private variable names (@mklauser, @ssim) -- `#111 <https://github.com/tardis-sn/tardis/pull/111>`__ minor fixed / - logger statements (@ssim) -- `#97 <https://github.com/tardis-sn/tardis/pull/97>`__ Fix for issue - #81: Add warning if w > 1. (@thegyro) -- `#92 <https://github.com/tardis-sn/tardis/pull/92>`__ Adding a simple - test to run a full calculation (@wkerzendorf) -- `#101 <https://github.com/tardis-sn/tardis/pull/101>`__ Fix for Issue - #88: Moved test functions for tardis.util from test\_config\_reader - (@thegyro) -- `#94 <https://github.com/tardis-sn/tardis/pull/94>`__ Fix coveralls - (@wkerzendorf) -- `#87 <https://github.com/tardis-sn/tardis/pull/87>`__ Added --profile - and --profiler\_log\_file command line arguments to enable... - (@orbitfold) - -0.9.1 (2014/02/04 01:51 +00:00) -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - -- `#74 <https://github.com/tardis-sn/tardis/pull/74>`__ fixed manifest - to incluse ez\_setup.py and setuptools\_bootstrap.py. fixes... - (@wkerzendorf) -- `#78 <https://github.com/tardis-sn/tardis/pull/78>`__ cosmetic fixes - (@ssim) -- `#77 <https://github.com/tardis-sn/tardis/pull/77>`__ Docs edit - (@ssim, @wkerzendorf) -- `#1 <https://github.com/tardis-sn/tardis/pull/1>`__ Docs fix - (@wkerzendorf, @ssim) -- `#76 <https://github.com/tardis-sn/tardis/pull/76>`__ stuff with - abundance profile readin (@ssim) -- `#75 <https://github.com/tardis-sn/tardis/pull/75>`__ work on gui - fixing (@ssim) -- `#72 <https://github.com/tardis-sn/tardis/pull/72>`__ documentation - update for release (@wkerzendorf) -- `#71 <https://github.com/tardis-sn/tardis/pull/71>`__ New - configuration style (@wkerzendorf) -- `#70 <https://github.com/tardis-sn/tardis/pull/70>`__ added simple - coveralls.io in there (@wkerzendorf) -- `#69 <https://github.com/tardis-sn/tardis/pull/69>`__ Atomic/atomic - symbols (@wkerzendorf) -- `#67 <https://github.com/tardis-sn/tardis/pull/67>`__ Config/ascii - file reader (@wkerzendorf) -- `#68 <https://github.com/tardis-sn/tardis/pull/68>`__ Tests/fixing2 - (@wkerzendorf) -- `#61 <https://github.com/tardis-sn/tardis/pull/61>`__ gui fix (@ssim) -- `#60 <https://github.com/tardis-sn/tardis/pull/60>`__ General - bugfixing (@wkerzendorf) -- `#59 <https://github.com/tardis-sn/tardis/pull/59>`__ General - bugfixing (@wkerzendorf, @nathanielatom, @ssim, @maryampatel) -- `#54 <https://github.com/tardis-sn/tardis/pull/54>`__ - Montecarlo/reflection (@ssim) -- `#52 <https://github.com/tardis-sn/tardis/pull/52>`__ - Montecarlo/reflection (@ssim, @wkerzendorf, @maryampatel, - @nathanielatom) -- `#51 <https://github.com/tardis-sn/tardis/pull/51>`__ Model/optimizig - (@nathanielatom) -- `#50 <https://github.com/tardis-sn/tardis/pull/50>`__ Gui/span - (@nathanielatom) -- `#49 <https://github.com/tardis-sn/tardis/pull/49>`__ Gui/span - (@nathanielatom) -- `#48 <https://github.com/tardis-sn/tardis/pull/48>`__ Gui/span - (@nathanielatom, @wkerzendorf, @maryampatel) -- `#39 <https://github.com/tardis-sn/tardis/pull/39>`__ General - bugfixing (@wkerzendorf, @nathanielatom, @maryampatel) -- `#46 <https://github.com/tardis-sn/tardis/pull/46>`__ Gui/dialogue - (@nathanielatom, @wkerzendorf) -- `#41 <https://github.com/tardis-sn/tardis/pull/41>`__ Gui/docs - (@nathanielatom) -- `#40 <https://github.com/tardis-sn/tardis/pull/40>`__ Gui/matplotlib - figure (@nathanielatom, @maryampatel) -- `#34 <https://github.com/tardis-sn/tardis/pull/34>`__ General - bugfixing (@wkerzendorf) -- `#32 <https://github.com/tardis-sn/tardis/pull/32>`__ Plasma/testing2 - (@maryampatel) -- `#29 <https://github.com/tardis-sn/tardis/pull/29>`__ General - bugfixing looks good to me (@wkerzendorf) -- `#28 <https://github.com/tardis-sn/tardis/pull/28>`__ The same as - last time but with small changes. (@mklauser) -- `#26 <https://github.com/tardis-sn/tardis/pull/26>`__ Plasma/bound - free (@mklauser) -- `#25 <https://github.com/tardis-sn/tardis/pull/25>`__ Simulation/run - single simulation (@wkerzendorf) - -v0.9a (2013/02/14 21:15 +00:00) -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - -- `#24 <https://github.com/tardis-sn/tardis/pull/24>`__ - Montecarlo/extract - seems fine merging (@ssim) -- `#22 <https://github.com/tardis-sn/tardis/pull/22>`__ Montecarlo/fix - convergence (@wkerzendorf, @ssim) -- `#20 <https://github.com/tardis-sn/tardis/pull/20>`__ Plasma/testing - (@maryampatel) -- `#18 <https://github.com/tardis-sn/tardis/pull/18>`__ Docs/fixdocs - (@maryampatel) -- `#17 <https://github.com/tardis-sn/tardis/pull/17>`__ Docs/fixdocs - (@maryampatel) -- `#16 <https://github.com/tardis-sn/tardis/pull/16>`__ Doc/atomic - preliminary merge (@maryampatel) -- `#14 <https://github.com/tardis-sn/tardis/pull/14>`__ Implemented all - changes (@maryampatel) -- `#13 <https://github.com/tardis-sn/tardis/pull/13>`__ Changed the - main documentation page (@maryampatel)