From a41526551a779e6155bfee9f9ef32500a1e39cfb Mon Sep 17 00:00:00 2001
From: Wolfgang Kerzendorf <wkerzendorf@gmail.com>
Date: Mon, 29 Apr 2019 16:55:06 -0400
Subject: [PATCH 1/4] add changes builder to travis process

---
 .travis.yml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.travis.yml b/.travis.yml
index 8487864eef6..cf227eb9146 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -53,6 +53,9 @@ script:
     - echo CC=$COMPILER python setup.py $SETUP_CMD
     - CC=$COMPILER python setup.py $SETUP_CMD
     - set -e
+    - conda install -y -c conda-forge nodejs
+    - npm install -g github-changes
+    - github-changes -o tardis-sn -r tardis --only-pulls --use-commit-body -f CHANGELOG.rst -k $GITHUB_CHANGES_OAUTH
     - python setup.py build_docs
     - pip install doctr
     - git lfs uninstall

From 1d0f495b4b50ff2740c1aa05d0b4ec2b1694ce3c Mon Sep 17 00:00:00 2001
From: Wolfgang Kerzendorf <wkerzendorf@gmail.com>
Date: Mon, 29 Apr 2019 17:59:41 -0400
Subject: [PATCH 2/4] add changelog more prominently. remove old tardis env

---
 docs/CHANGELOG.md  |  1 +
 docs/changelog.rst |  3 ---
 docs/conf.py       |  9 +++++++--
 docs/index.rst     |  2 +-
 tardis_env27.yml   | 48 ----------------------------------------------
 tardis_env3.yml    |  1 +
 6 files changed, 10 insertions(+), 54 deletions(-)
 create mode 120000 docs/CHANGELOG.md
 delete mode 100644 docs/changelog.rst
 delete mode 100644 tardis_env27.yml

diff --git a/docs/CHANGELOG.md b/docs/CHANGELOG.md
new file mode 120000
index 00000000000..04c99a55caa
--- /dev/null
+++ b/docs/CHANGELOG.md
@@ -0,0 +1 @@
+../CHANGELOG.md
\ No newline at end of file
diff --git a/docs/changelog.rst b/docs/changelog.rst
deleted file mode 100644
index 76888fe1bf1..00000000000
--- a/docs/changelog.rst
+++ /dev/null
@@ -1,3 +0,0 @@
-.. _changelog:
-
-.. include:: ../CHANGELOG.rst
diff --git a/docs/conf.py b/docs/conf.py
index 4eeb17d705e..6a38332ed07 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -51,10 +51,15 @@
     'numpydoc',
     'nbsphinx',
     'sphinx.ext.autodoc',
-    'sphinx-jsonschema'
+    'sphinx-jsonschema',
+    'recommonmark'
 ]
 
-source_suffix = '.rst'
+source_suffix = {
+    '.rst': 'restructuredtext',
+#    '.txt': 'markdown',
+    '.md': 'markdown',
+}
 ## get's rid of many toctree contains errors: see https://github.com/phn/pytpm/issues/3#issuecomment-12133978
 numpydoc_show_class_members = False
 extensions += ['matplotlib.sphinxext.plot_directive',
diff --git a/docs/index.rst b/docs/index.rst
index d91c7b8991e..249bff518c4 100644
--- a/docs/index.rst
+++ b/docs/index.rst
@@ -34,6 +34,7 @@ Using Tardis
     :maxdepth: 2
 
     installation
+    CHANGELOG.md
     quickstart
     running/index
     examples/index
@@ -62,7 +63,6 @@ Developing Tardis
     issues
     workflow/development_workflow
     runnints_tests
-    changelog
 
 ==========
 References
diff --git a/tardis_env27.yml b/tardis_env27.yml
deleted file mode 100644
index a5e219f647a..00000000000
--- a/tardis_env27.yml
+++ /dev/null
@@ -1,48 +0,0 @@
-name: tardis
-
-channels:
-    - conda-forge
-
-dependencies:
-- python=2.7
-- numpy=1.12
-- scipy=1
-- pandas=0.20
-- pytables
-- h5py=2
-- matplotlib=2.0
-- astropy=1.3
-- numexpr=2.6
-- Cython=0.28.4
-- networkx=1.10
-- pytest=3.0
-- pyyaml=3.12
-- jsonschema=2.5.1
-- pyne=0.5
-- graphviz=2.38
-- pygraphviz
-
-# RTD requirements
-- sphinx=1.5.1
-- nbconvert
-- numpydoc=0.8
-- docutils=0.13.1
-- nbformat
-- nbsphinx
-- jupyter
-#Coverage requirements
-- coverage=3.7.1
-- requests=2.9.1
-- docopt=0.6.2
-- pytest-cov=2.2.1
-- codecov
-#testing requirements
-- git-lfs=2.4
-- pip:
-  - sphinx_bootstrap_theme
-  - sphinxcontrib-bibtex
-  - sphinxcontrib-tikz
-  - pytest-html==1.10.0
-  - dokuwiki
-  - dot2tex
-  - sphinx-jsonschema
diff --git a/tardis_env3.yml b/tardis_env3.yml
index c757e460d5b..6095834602f 100644
--- a/tardis_env3.yml
+++ b/tardis_env3.yml
@@ -41,6 +41,7 @@ dependencies:
 - sphinx_bootstrap_theme
 - sphinxcontrib-bibtex
 - sphinx_rtd_theme
+- recommonmark
 
 #Test/Coverage requirements
 - git-lfs

From 038772449469857a39928f7cb048999473b0c04e Mon Sep 17 00:00:00 2001
From: Wolfgang Kerzendorf <wkerzendorf@gmail.com>
Date: Mon, 29 Apr 2019 18:02:05 -0400
Subject: [PATCH 3/4] fix the filename for changelog

---
 .travis.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.travis.yml b/.travis.yml
index cf227eb9146..61c059e6e49 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -55,7 +55,7 @@ script:
     - set -e
     - conda install -y -c conda-forge nodejs
     - npm install -g github-changes
-    - github-changes -o tardis-sn -r tardis --only-pulls --use-commit-body -f CHANGELOG.rst -k $GITHUB_CHANGES_OAUTH
+    - github-changes -o tardis-sn -r tardis --only-pulls --use-commit-body -f CHANGELOG.md -k $GITHUB_CHANGES_OAUTH
     - python setup.py build_docs
     - pip install doctr
     - git lfs uninstall

From a044c55b576fc450db055af6e6fef360ddcc16e9 Mon Sep 17 00:00:00 2001
From: Wolfgang Kerzendorf <wkerzendorf@gmail.com>
Date: Mon, 29 Apr 2019 18:03:04 -0400
Subject: [PATCH 4/4] add markdown changelog - remove rst changelog

---
 CHANGELOG.md  | 432 +++++++++++++++++++++++++++
 CHANGELOG.rst | 788 --------------------------------------------------
 2 files changed, 432 insertions(+), 788 deletions(-)
 create mode 100644 CHANGELOG.md
 delete mode 100644 CHANGELOG.rst

diff --git a/CHANGELOG.md b/CHANGELOG.md
new file mode 100644
index 00000000000..30f9620b1e9
--- /dev/null
+++ b/CHANGELOG.md
@@ -0,0 +1,432 @@
+## Change Log
+
+### upcoming (2019/04/29 20:48 +00:00)
+- [#914](https://github.com/tardis-sn/tardis/pull/914) make python3 compatible (#914) (@wkerzendorf)
+- [#902](https://github.com/tardis-sn/tardis/pull/902) general overhaul of the docs for 3.0 (#902) (@wkerzendorf)
+- [#916](https://github.com/tardis-sn/tardis/pull/916) make python3 compatible (#916) (@wkerzendorf)
+- [#915](https://github.com/tardis-sn/tardis/pull/915) Parsing STELLA files for TARDIS (#915) (@sarafina325)
+- [#911](https://github.com/tardis-sn/tardis/pull/911) Use Russian roulette to kill v-packets with negligible weight (#911) (@chvogl)
+- [#697](https://github.com/tardis-sn/tardis/pull/697) Relativity (#697) (@chvogl)
+
+### v3.0.a1 (2019/03/10 15:03 +00:00)
+- [#901](https://github.com/tardis-sn/tardis/pull/901) .nojekyll added to docs (#901) (@debajyotidasgupta)
+- [#897](https://github.com/tardis-sn/tardis/pull/897) add pytest azurepipelines (#897) (@wkerzendorf)
+- [#896](https://github.com/tardis-sn/tardis/pull/896) Adding general build artefacts (#896) (@wkerzendorf)
+- [#894](https://github.com/tardis-sn/tardis/pull/894) Azure pipeline for TARDIS (#894) (@wkerzendorf)
+- [#893](https://github.com/tardis-sn/tardis/pull/893) add doctr to TARDIS (#893) (@wkerzendorf)
+- [#892](https://github.com/tardis-sn/tardis/pull/892) adding azure-pipelines (#892) (@wkerzendorf)
+- [#891](https://github.com/tardis-sn/tardis/pull/891) New template setup from astropy (#891) (@wkerzendorf)
+- [#888](https://github.com/tardis-sn/tardis/pull/888) Update installation.rst (#888) (@nileshpatra)
+- [#886](https://github.com/tardis-sn/tardis/pull/886) Pandas ix fix (#886) (@wkerzendorf)
+- [#879](https://github.com/tardis-sn/tardis/pull/879) Python3 version of TARDIS (#879) (@wkerzendorf)
+- [#881](https://github.com/tardis-sn/tardis/pull/881) Adds description of gcc problem to documentation (#881) (@ycamacho)
+- [#859](https://github.com/tardis-sn/tardis/pull/859) Use interpolated values to do formal integral with more shells (#859) (@chvogl)
+- [#873](https://github.com/tardis-sn/tardis/pull/873) Some small fixes related to the documentation and the building process (Fix #842) (#873) (@unoebauer)
+- [#868](https://github.com/tardis-sn/tardis/pull/868) Add Travis Stages: Activate Integration tests (#868) (@unoebauer)
+- [#866](https://github.com/tardis-sn/tardis/pull/866) Add Travis Caching and separate scripts for CI (#866) (@wkerzendorf)
+- [#864](https://github.com/tardis-sn/tardis/pull/864) Unify unittest hdfs (#864) (@unoebauer)
+- [#865](https://github.com/tardis-sn/tardis/pull/865) Adding CodeCov integration (#865) (@wkerzendorf)
+- [#860](https://github.com/tardis-sn/tardis/pull/860) add call_back to run_tardis (#860) (@wkerzendorf)
+- [#863](https://github.com/tardis-sn/tardis/pull/863) Thomson cross section: Continuation of PR #688 (#863) (@unoebauer)
+- [#850](https://github.com/tardis-sn/tardis/pull/850) Add full test for formal integral method (#850) (@unoebauer)
+- [#861](https://github.com/tardis-sn/tardis/pull/861) Describe refdata update and workflow refactor (#861) (@wkerzendorf)
+- [#848](https://github.com/tardis-sn/tardis/pull/848) Add capability to store information about the plasma state during iterations (#848) (@unoebauer)
+- [#857](https://github.com/tardis-sn/tardis/pull/857) Refactor logging  (#857) (@wkerzendorf)
+- [#856](https://github.com/tardis-sn/tardis/pull/856) Extend formal integral to line_interaction_type macroatom (#856) (@chvogl)
+- [#855](https://github.com/tardis-sn/tardis/pull/855) Make the conda-forge channel the only channel (#855) (@wkerzendorf)
+- [#853](https://github.com/tardis-sn/tardis/pull/853) Fix formal integral (#853) (@chvogl)
+- [#849](https://github.com/tardis-sn/tardis/pull/849) Missing refdata (#849) (@wkerzendorf)
+- [#851](https://github.com/tardis-sn/tardis/pull/851) add atomic data description (#851) (@wkerzendorf)
+- [#845](https://github.com/tardis-sn/tardis/pull/845) Update Documentation: new location of tardis_example (#845) (@unoebauer)
+- [#843](https://github.com/tardis-sn/tardis/pull/843) Fix issue with custom_composition reader (#843) (@unoebauer)
+- [#844](https://github.com/tardis-sn/tardis/pull/844) Remove bbsampling from schema file (#844) (@pfreddy)
+- [#837](https://github.com/tardis-sn/tardis/pull/837) Add json sphinx (#837) (@wkerzendorf)
+- [#841](https://github.com/tardis-sn/tardis/pull/841) Fixed indentation and position of delta_treatment in plasma/standard_plasmas.py (#841) (@Heringer-Epson)
+- [#838](https://github.com/tardis-sn/tardis/pull/838) fix cython version to specific commit (#838) (@wkerzendorf)
+- [#821](https://github.com/tardis-sn/tardis/pull/821) Simplify convergence strategies (#821) (@unoebauer)
+- [#833](https://github.com/tardis-sn/tardis/pull/833) restructure landing page to use notebooks (#833) (@wkerzendorf)
+- [#832](https://github.com/tardis-sn/tardis/pull/832) Fixes #830 (#832) (@unoebauer)
+
+### v2_test3 (2018/06/18 20:13 +00:00)
+- [#829](https://github.com/tardis-sn/tardis/pull/829) build bleeding edge cython (#829) (@wkerzendorf)
+- [#828](https://github.com/tardis-sn/tardis/pull/828) trying to get travis to build (#828) (@wkerzendorf)
+- [#827](https://github.com/tardis-sn/tardis/pull/827) Update travis link to miniconda (#827) (@unoebauer)
+- [#826](https://github.com/tardis-sn/tardis/pull/826) Remove docu refs to tardis_example.tar.gz (#826) (@unoebauer)
+- [#820](https://github.com/tardis-sn/tardis/pull/820) update of mailmap (#820) (@wkerzendorf)
+- [#819](https://github.com/tardis-sn/tardis/pull/819) Reintroduce and update changelog (#819) (@unoebauer)
+- [#815](https://github.com/tardis-sn/tardis/pull/815) Update and Fix Documentation (#815) (@unoebauer)
+- [#816](https://github.com/tardis-sn/tardis/pull/816) Remove old and broken badges (@unoebauer)
+- [#814](https://github.com/tardis-sn/tardis/pull/814) Fix numpydoc problem (@wkerzendorf, @unoebauer)
+
+### v2.0 (2018/04/05 13:03 +00:00)
+- [#812](https://github.com/tardis-sn/tardis/pull/812) Update of documentation (@unoebauer)
+- [#809](https://github.com/tardis-sn/tardis/pull/809) fix dependencies for tardis conda env (#809) (@wkerzendorf)
+- [#761](https://github.com/tardis-sn/tardis/pull/761) Add caching for integrated spectrum: Fix #760 (@unoebauer)
+- [#715](https://github.com/tardis-sn/tardis/pull/715) Merge 'generate_reference_path' and 'reference_path' in integration tests (bug #672) (@rinklejain)
+- [#801](https://github.com/tardis-sn/tardis/pull/801) Decay of isotopes branch (@wkerzendorf, @vg3095, @pfreddy)
+- [#806](https://github.com/tardis-sn/tardis/pull/806) Fix reference dictionary problem (@pfreddy)
+- [#803](https://github.com/tardis-sn/tardis/pull/803) include yml files in MANIFEST (@wkerzendorf)
+- [#802](https://github.com/tardis-sn/tardis/pull/802) Fix for PR #801 (@vg3095)
+- [#799](https://github.com/tardis-sn/tardis/pull/799) tardis/plasma/standard_plasmas.py: old database files warning (@laudb)
+- [#797](https://github.com/tardis-sn/tardis/pull/797) Minor Updates: Fixes for #521 and #699 (@unoebauer)
+- [#796](https://github.com/tardis-sn/tardis/pull/796) Prevent pandas SettingWithCopyWarning by copying DataFrames when slicing (@lukeshingles)
+- [#795](https://github.com/tardis-sn/tardis/pull/795) Force deactivate LaTeX in GUI - Fix #441 (@unoebauer)
+- [#793](https://github.com/tardis-sn/tardis/pull/793) Add pyside to requirements (needed for GUI) (@wkerzendorf, @unoebauer)
+- [#794](https://github.com/tardis-sn/tardis/pull/794) add new readthedocs.yml (@wkerzendorf)
+- [#792](https://github.com/tardis-sn/tardis/pull/792) Fix compatibility with networkx 2.0 (@lukeshingles)
+- [#791](https://github.com/tardis-sn/tardis/pull/791) Propagate changes to the line index into the GUI code (@yeganer)
+- [#786](https://github.com/tardis-sn/tardis/pull/786) The final carsus merge (@yeganer, @ftsamis, @mishinma)
+- [#782](https://github.com/tardis-sn/tardis/pull/782) Plasma write_to_tex/dot unit tests (@vg3095)
+- [#781](https://github.com/tardis-sn/tardis/pull/781) Omit coverage of test related files (@vg3095)
+- [#785](https://github.com/tardis-sn/tardis/pull/785) [DOC] Update Running tests doc (@vg3095)
+- [#774](https://github.com/tardis-sn/tardis/pull/774) Replace Comparison values in Plasma Unit Tests with reference HDF file (@vg3095)
+- [#780](https://github.com/tardis-sn/tardis/pull/780) LevelBoltzmannFactorNLTE.from_config is now a staticmethod (@yeganer)
+- [#778](https://github.com/tardis-sn/tardis/pull/778) Fix NLTE (@yeganer)
+- [#776](https://github.com/tardis-sn/tardis/pull/776) Fix compatibility bug in radiative_properties (@yeganer)
+- [#779](https://github.com/tardis-sn/tardis/pull/779) Save coverage report when tests use tardis-refdata (@vg3095)
+- [#775](https://github.com/tardis-sn/tardis/pull/775) Transition from atomic-dataset config option to tardis-refdata (@vg3095)
+- [#772](https://github.com/tardis-sn/tardis/pull/772) [TEP007] CMFGEN density parser (@vg3095)
+- [#771](https://github.com/tardis-sn/tardis/pull/771) [TEP007] Add cmfgen2tardis script (@vg3095)
+- [#757](https://github.com/tardis-sn/tardis/pull/757) [TEP007] Decay and merge isotopic abundance dataframe (@vg3095)
+- [#769](https://github.com/tardis-sn/tardis/pull/769) [TEP014] [DOC] Updated to_hdf notebook (@vg3095)
+- [#759](https://github.com/tardis-sn/tardis/pull/759) Formal Integral: including electron scattering (@unoebauer, @yeganer)
+- [#768](https://github.com/tardis-sn/tardis/pull/768) [TEP014] Simulation HDF and deprecated to_hdf cleanup. (@vg3095)
+- [#773](https://github.com/tardis-sn/tardis/pull/773) Update Documentation (@unoebauer)
+- [#767](https://github.com/tardis-sn/tardis/pull/767) [TEP007] Docs for isotope config (@vg3095)
+- [#764](https://github.com/tardis-sn/tardis/pull/764) [TEP007] Isotope stratified file support (@vg3095)
+- [#752](https://github.com/tardis-sn/tardis/pull/752) [TEP014] PlasmaWriterMixin (@vg3095)
+- [#748](https://github.com/tardis-sn/tardis/pull/748) [TEP014] Update Runner and Spectrum classes to use HDFWriter + Unit Tests (@vg3095)
+- [#762](https://github.com/tardis-sn/tardis/pull/762) [TEP007] Isotope uniform config option (@vg3095)
+- [#765](https://github.com/tardis-sn/tardis/pull/765) Attempt to fix up the GUI (@ssim, @unoebauer)
+- [#13](https://github.com/tardis-sn/tardis/pull/13) Introduce proper masking for GUI (addition to PR #765) (@unoebauer)
+- [#1](https://github.com/tardis-sn/tardis/pull/1) Streamline the OMP implementation (@yeganer)
+- [#756](https://github.com/tardis-sn/tardis/pull/756) [TEP007] [WIP] Isotope Abundances class (@vg3095, @wkerzendorf)
+- [#758](https://github.com/tardis-sn/tardis/pull/758) Add new version to tardis_env27 and add pyne (@wkerzendorf)
+- [#753](https://github.com/tardis-sn/tardis/pull/753) [TEP014][DOC] HDFWriter Documentation (@vg3095)
+- [#740](https://github.com/tardis-sn/tardis/pull/740) [GSoC] Formal integral Project (@yeganer)
+- [#747](https://github.com/tardis-sn/tardis/pull/747) [TEP014] Update Model and Density classes to use HDFWriter + Unit Tests (@vg3095)
+- [#750](https://github.com/tardis-sn/tardis/pull/750) [TEP005][QOL] Add MontecarloRunner.spectrum_integrated (@yeganer)
+- [#749](https://github.com/tardis-sn/tardis/pull/749) [TEP014] Change name of HDFWriter to HDFWriterMixin (@vg3095)
+- [#745](https://github.com/tardis-sn/tardis/pull/745) [TEP005][DOC] Documentation (@yeganer)
+- [#751](https://github.com/tardis-sn/tardis/pull/751) [QOL] Add default axis to TARDISSpectrum.plot (@yeganer)
+- [#743](https://github.com/tardis-sn/tardis/pull/743) Fix bug in plasma (@yeganer)
+- [#744](https://github.com/tardis-sn/tardis/pull/744) [TEP014] Added HDFWriter class + Unit Tests (@vg3095)
+- [#746](https://github.com/tardis-sn/tardis/pull/746) [TEP005][CONFIG] Prevent incompatible configurations (@yeganer)
+- [#741](https://github.com/tardis-sn/tardis/pull/741) Add unit tests for the formal integral (@yeganer)
+- [#742](https://github.com/tardis-sn/tardis/pull/742) Fix clash in RTD dependencies (@yeganer)
+- [#735](https://github.com/tardis-sn/tardis/pull/735) Move common ctest fixtures into conftest.py (@yeganer)
+- [#729](https://github.com/tardis-sn/tardis/pull/729) Refactor spectrum (@yeganer)
+- [#730](https://github.com/tardis-sn/tardis/pull/730) Fix test_plasma_simple not skipping properly (@yeganer)
+- [#712](https://github.com/tardis-sn/tardis/pull/712) Colorize Logger (@vg3095)
+- [#718](https://github.com/tardis-sn/tardis/pull/718) Unit test for untested method of montecarlo simulation code (@suyashgupta20)
+- [#724](https://github.com/tardis-sn/tardis/pull/724) Rebase PR #678 (@yeganer)
+- [#709](https://github.com/tardis-sn/tardis/pull/709) Add note about broken GUI to docu (@unoebauer)
+- [#708](https://github.com/tardis-sn/tardis/pull/708) Add new installation instructions (@wkerzendorf)
+- [#704](https://github.com/tardis-sn/tardis/pull/704) Fix ignoring model tests (@ftsamis)
+- [#700](https://github.com/tardis-sn/tardis/pull/700) Add contributing guidelines (@wkerzendorf)
+- [#686](https://github.com/tardis-sn/tardis/pull/686) converted spectrum_frequency (@chinmay0301)
+- [#696](https://github.com/tardis-sn/tardis/pull/696) Add missing diagnostics property to runner's to_hdf list (@unoebauer)
+- [#694](https://github.com/tardis-sn/tardis/pull/694) Significantly reduce peak memory usage when vpacket logging is enabled (@ftsamis)
+- [#682](https://github.com/tardis-sn/tardis/pull/682) Import montecarlo.base in the __init__ module of the package. (@ftsamis)
+- [#670](https://github.com/tardis-sn/tardis/pull/670) Integrate continuum interactions into cmontecarlo (@chvogl)
+- [#652](https://github.com/tardis-sn/tardis/pull/652) [TEP006] Aggregate TARDIS restructure and configuration system cleanup (@ftsamis)
+- [#677](https://github.com/tardis-sn/tardis/pull/677) Update link to tardis_example.yml in documentation - Fix #676 (@unoebauer)
+- [#674](https://github.com/tardis-sn/tardis/pull/674) Change matplotlib backend - fix test_integration remote plotting issue (@unoebauer)
+- [#664](https://github.com/tardis-sn/tardis/pull/664) Kd final test (@wkerzendorf, @kdexd, @yeganer)
+- [#21](https://github.com/tardis-sn/tardis/pull/21) fKd final test (@yeganer)
+- [#668](https://github.com/tardis-sn/tardis/pull/668) change to tardis atom data on git lfs (@wkerzendorf)
+- [#666](https://github.com/tardis-sn/tardis/pull/666) Remove News from main TARDIS github page (@unoebauer)
+- [#667](https://github.com/tardis-sn/tardis/pull/667) Update SOCIS and GSOC students credits (@unoebauer)
+- [#665](https://github.com/tardis-sn/tardis/pull/665) Add to_hdf compression (@yeganer)
+- [#663](https://github.com/tardis-sn/tardis/pull/663) Develop (@kdexd)
+- [#657](https://github.com/tardis-sn/tardis/pull/657) Require pyyaml 3.12 (@ftsamis)
+- [#659](https://github.com/tardis-sn/tardis/pull/659) Update installation docs (@ftsamis)
+- [#653](https://github.com/tardis-sn/tardis/pull/653) Facility to provide per-setup atom data as well as save report locally. (@kdexd)
+- [#641](https://github.com/tardis-sn/tardis/pull/641) Fix detailed radiative rates (@yeganer)
+- [#642](https://github.com/tardis-sn/tardis/pull/642) Use pytest-html==1.10.0, modify DokuReport class accordingly. (@kdexd)
+- [#630](https://github.com/tardis-sn/tardis/pull/630) [IntegrationTests] Overview page on Dokuwiki.
 
 Running the integration tests will update an overview page on DokuWiki. (@kdexd)
+- [#620](https://github.com/tardis-sn/tardis/pull/620) Runner script to automate execution of integration tests. (@kdexd)
+- [#628](https://github.com/tardis-sn/tardis/pull/628) Remove exponent property from yaml files with exponential density (@ftsamis)
+- [#626](https://github.com/tardis-sn/tardis/pull/626) Revert "Add exponent as a property for exponential density" (@ftsamis)
+- [#542](https://github.com/tardis-sn/tardis/pull/542) Updates to He NLTE treatment. (@aoifeboyle)
+- [#612](https://github.com/tardis-sn/tardis/pull/612) Add facility to generate and accept HDF files as reference data for Integration Tests. (@kdexd)
+- [#614](https://github.com/tardis-sn/tardis/pull/614) Omit the integration_tests when running coveralls (@yeganer)
+- [#619](https://github.com/tardis-sn/tardis/pull/619) Fixed incorrect name in error message (@Tobychev)
+- [#618](https://github.com/tardis-sn/tardis/pull/618) to_hdf: If only the last run is stored, do not add a counter in the name (@ftsamis)
+- [#617](https://github.com/tardis-sn/tardis/pull/617) Add a to_hdf method on TARDISSpectrum (@ftsamis)
+- [#600](https://github.com/tardis-sn/tardis/pull/600) Parametrize the Slow Test class with two setups. (@kdexd)
+- [#613](https://github.com/tardis-sn/tardis/pull/613) Fix bug in montecarlo.pyx (@yeganer)
+- [#595](https://github.com/tardis-sn/tardis/pull/595) Line absorption rate estimator (@Tobychev)
+- [#606](https://github.com/tardis-sn/tardis/pull/606) Merge to_hdf (@ftsamis, @wkerzendorf)
+- [#585](https://github.com/tardis-sn/tardis/pull/585) [TEP002] Add a to_hdf method to the MontecarloRunner (#585) (@ftsamis)
+- [#597](https://github.com/tardis-sn/tardis/pull/597) Use abundances, densities filepaths relative to w7 config file. (@kdexd)
+- [#569](https://github.com/tardis-sn/tardis/pull/569) Added a conda environment for tardis (@wkerzendorf)
+- [#565](https://github.com/tardis-sn/tardis/pull/565) Change the way AtomData quantities are initialized (@yeganer)
+- [#599](https://github.com/tardis-sn/tardis/pull/599) Update the tardis_example tar file provided in the documentation. (@ftsamis)
+- [#598](https://github.com/tardis-sn/tardis/pull/598) Fix convergence handling in run_legacy_simulation - fix issue #593 (@unoebauer)
+- [#590](https://github.com/tardis-sn/tardis/pull/590) Link images of comparison plots in DokuReport using hookwrapper. (@kdexd)
+- [#591](https://github.com/tardis-sn/tardis/pull/591) Fix path of CSS and JS files used in html report. (@kdexd)
+- [#594](https://github.com/tardis-sn/tardis/pull/594) Provide tardis.yaml_load shortcut (@yeganer)
+- [#592](https://github.com/tardis-sn/tardis/pull/592) Fix virt energy (@yeganer)
+- [#583](https://github.com/tardis-sn/tardis/pull/583) Subclass pytest-html's HTMLReport to DokuReport class for report generation and upload (@kdexd)
+- [#587](https://github.com/tardis-sn/tardis/pull/587) Move the three spectra attributes from Radial1DModel to MontecarloRunner (@ftsamis)
+- [#578](https://github.com/tardis-sn/tardis/pull/578) Shift slow test related pytest hooks in lower level conftest.py (#578) (@kdexd)
+- [#581](https://github.com/tardis-sn/tardis/pull/581) Update several files to match package_template (@yeganer)
+- [#576](https://github.com/tardis-sn/tardis/pull/576) [config-system] Validator rewrite: Use jsonschema (@ftsamis)
+- [#575](https://github.com/tardis-sn/tardis/pull/575) Replace misused calls to yaml.load with a helper function. (@ftsamis)
+- [#570](https://github.com/tardis-sn/tardis/pull/570) Enable generation of html report of integration tests, and upload to dokuwiki. (@kdexd)
+- [#574](https://github.com/tardis-sn/tardis/pull/574) tardis/base.py: Remove duplicate code from run_tardis (@ftsamis)
+- [#573](https://github.com/tardis-sn/tardis/pull/573) io/util.py (YAMLLoader): Use OrderedDict to store loaded YAML (@ftsamis)
+- [#572](https://github.com/tardis-sn/tardis/pull/572) Change the way YAMLLoader resolves some properties (@ftsamis)
+- [#532](https://github.com/tardis-sn/tardis/pull/532) Documentation overhaul (@unoebauer, @kdexd, @chvogl)
+- [#571](https://github.com/tardis-sn/tardis/pull/571) data/tardis_config_definition.yml: Set the exponent property as mandatory when density is exponential. (#571) (@ftsamis)
+- [#566](https://github.com/tardis-sn/tardis/pull/566) Initial laydown of comparison plots for TestW7. (#566) (@kdexd)
+- [#567](https://github.com/tardis-sn/tardis/pull/567) Accept keyword arguments for Configuration.from_yaml (@yeganer)
+- [#561](https://github.com/tardis-sn/tardis/pull/561) TestW7: Assertions for spectrum quantities, fixture for handling baseline data. (@kdexd)
+- [#515](https://github.com/tardis-sn/tardis/pull/515) [config-system] Add a custom YAML Loader to parse astropy quantities (@ftsamis)
+- [#555](https://github.com/tardis-sn/tardis/pull/555) Use pytest's monkeypatch.chdir to change the working directory in the config_reader tests (@ftsamis, @lukeshingles)
+- [#558](https://github.com/tardis-sn/tardis/pull/558) Integration Test class for Stratified W7 setup. (@kdexd)
+- [#557](https://github.com/tardis-sn/tardis/pull/557) Enable skipping slow tests. (@kdexd)
+- [#544](https://github.com/tardis-sn/tardis/pull/544) Continue cmontecarlo tests refactor. Extend #530. (@kdexd)
+- [#543](https://github.com/tardis-sn/tardis/pull/543) Fix issue #535: Treat rel. paths inside config relative to the config file (@lukeshingles, @ftsamis)
+- [#1](https://github.com/tardis-sn/tardis/pull/1) Write tests for the issue #535 fix. (@ftsamis)
+- [#551](https://github.com/tardis-sn/tardis/pull/551) Add SOCIS 2016 advertisement (@unoebauer)
+- [#547](https://github.com/tardis-sn/tardis/pull/547) Fix Issue #548 (@kdexd)
+- [#545](https://github.com/tardis-sn/tardis/pull/545) added mailmap to compile the commits for each person (#545) (@wkerzendorf)
+- [#539](https://github.com/tardis-sn/tardis/pull/539) Adding OSX to our travis build (#539) (@wkerzendorf)
+- [#541](https://github.com/tardis-sn/tardis/pull/541) Move progress bar update after calculation (#541) (@yeganer)
+- [#540](https://github.com/tardis-sn/tardis/pull/540) Mirroring C enums in Python for CMontecarlo tests. (@kdexd)
+- [#538](https://github.com/tardis-sn/tardis/pull/538) Upgrading to the new Readthedocs infrastructure (#538) (@wkerzendorf)
+- [#530](https://github.com/tardis-sn/tardis/pull/530) Refactor cmontecarlo testing framework (@kdexd)
+- [#537](https://github.com/tardis-sn/tardis/pull/537) Ignore invalid OpenMP nthreads values (#537) (@yeganer)
+- [#533](https://github.com/tardis-sn/tardis/pull/533) Remove rpacket.recently_crossed_boundary flag (@yeganer)
+- [#514](https://github.com/tardis-sn/tardis/pull/514) Performance (@yeganer)
+- [#531](https://github.com/tardis-sn/tardis/pull/531) Organize headers in C-Extension (@yeganer)
+- [#526](https://github.com/tardis-sn/tardis/pull/526) Docs: Include conda-requirements in installation.rst (@kdexd)
+- [#519](https://github.com/tardis-sn/tardis/pull/519) Documentation:Installation modify command (@yeganer)
+- [#510](https://github.com/tardis-sn/tardis/pull/510) Updates requirements to solve libgfortran error. Fixes #509 (@kdexd)
+- [#495](https://github.com/tardis-sn/tardis/pull/495) Fix energy conservation (@unoebauer)
+- [#486](https://github.com/tardis-sn/tardis/pull/486) Bugfix radiative rates type detailed (@chvogl, @unoebauer)
+- [#488](https://github.com/tardis-sn/tardis/pull/488) Fix indentation in c extension (@yeganer)
+- [#494](https://github.com/tardis-sn/tardis/pull/494) Fix #493 (@yeganer)
+- [#1](https://github.com/tardis-sn/tardis/pull/1) Add simple test for j_blue_estimator (@unoebauer)
+- [#491](https://github.com/tardis-sn/tardis/pull/491) Include IDE specific auto-generated files in .gitignore. Fixes #490 (@kdexd)
+- [#485](https://github.com/tardis-sn/tardis/pull/485) Montecarlo progress (@yeganer)
+- [#457](https://github.com/tardis-sn/tardis/pull/457) Fix Issue #454 (@yeganer)
+- [#484](https://github.com/tardis-sn/tardis/pull/484) Minor improvement of vpacket logging scheme (@unoebauer)
+- [#479](https://github.com/tardis-sn/tardis/pull/479) added units to test_simulation.py (@mishinma)
+- [#469](https://github.com/tardis-sn/tardis/pull/469) Changed the Link for AstroPy's dev workflow (@souravsingh)
+- [#481](https://github.com/tardis-sn/tardis/pull/481) Introcuding safe_malloc and safe_realloc macros: fixes #480 (@unoebauer)
+- [#475](https://github.com/tardis-sn/tardis/pull/475) Reorganize import statements in atomic.py (@Pratik151)
+- [#471](https://github.com/tardis-sn/tardis/pull/471) Quickfix to solve Issue #455 and #464 (@yeganer)
+- [#472](https://github.com/tardis-sn/tardis/pull/472) fixed build of documentation on readthedocs (@wkerzendorf)
+- [#461](https://github.com/tardis-sn/tardis/pull/461) Bugfix test cmontecarlo (@yeganer)
+- [#452](https://github.com/tardis-sn/tardis/pull/452) Build fix and nthreads fix - fixes #356 (@unoebauer)
+- [#450](https://github.com/tardis-sn/tardis/pull/450) Checking for zero-volume cells: Fixes issue #79 (@unoebauer)
+- [#449](https://github.com/tardis-sn/tardis/pull/449) added test to verify virtual spectrum (@unoebauer)
+- [#446](https://github.com/tardis-sn/tardis/pull/446) calculate virtual spectrum independently of vpacket loggin - fixes #445 (@unoebauer)
+- [#440](https://github.com/tardis-sn/tardis/pull/440) started addressing issue #436 (@unoebauer)
+- [#426](https://github.com/tardis-sn/tardis/pull/426) Simulation - restructure (@wkerzendorf)
+- [#434](https://github.com/tardis-sn/tardis/pull/434) updated the .travis.yml file to do a rehash before executing conda (@wkerzendorf)
+- [#433](https://github.com/tardis-sn/tardis/pull/433) Optional vpacket logging WIP (@tardis-sn)
+- [#425](https://github.com/tardis-sn/tardis/pull/425) Updated nlte.rst (@souravsingh)
+- [#424](https://github.com/tardis-sn/tardis/pull/424) added a new requirement for astropy (@wkerzendorf)
+- [#1](https://github.com/tardis-sn/tardis/pull/1) Update nlte.rst (@souravsingh)
+- [#375](https://github.com/tardis-sn/tardis/pull/375) made sure that atomic does not reinsert the index into the dataframe (@wkerzendorf)
+- [#420](https://github.com/tardis-sn/tardis/pull/420) Memory issue (@wkerzendorf)
+- [#416](https://github.com/tardis-sn/tardis/pull/416) added new version requirements for pandas and astropy (@wkerzendorf)
+- [#414](https://github.com/tardis-sn/tardis/pull/414) Improvements to He approximation. (@aoifeboyle)
+- [#413](https://github.com/tardis-sn/tardis/pull/413) WIP Docstrings (@wkerzendorf)
+- [#412](https://github.com/tardis-sn/tardis/pull/412) Fix for zeta issues. (@wkerzendorf)
+- [#3](https://github.com/tardis-sn/tardis/pull/3) Plasma/ab zeta fix (@wkerzendorf)
+- [#410](https://github.com/tardis-sn/tardis/pull/410) WIP: Cleaning up plasma (@wkerzendorf)
+- [#399](https://github.com/tardis-sn/tardis/pull/399) Plasma optimization (@wkerzendorf, @mreineck)
+- [#2](https://github.com/tardis-sn/tardis/pull/2) fix for chi_0 problem (@wkerzendorf)
+- [#19](https://github.com/tardis-sn/tardis/pull/19) Plasma optimisation fix. (@aoifeboyle)
+- [#404](https://github.com/tardis-sn/tardis/pull/404) Montecarlo/new packet source (@wkerzendorf)
+- [#407](https://github.com/tardis-sn/tardis/pull/407) Organising of plasma base files. (@aoifeboyle)
+- [#405](https://github.com/tardis-sn/tardis/pull/405) Pandas macroatom issue fix (@wkerzendorf)
+- [#406](https://github.com/tardis-sn/tardis/pull/406) Numerical He NLTE. (@aoifeboyle)
+- [#401](https://github.com/tardis-sn/tardis/pull/401) Alternative fix for issue #393 (@mreineck)
+- [#398](https://github.com/tardis-sn/tardis/pull/398) More cleanups (@mreineck)
+- [#400](https://github.com/tardis-sn/tardis/pull/400) Change to NLTE properties (@aoifeboyle)
+- [#397](https://github.com/tardis-sn/tardis/pull/397) Montecarlo/memoryview (@wkerzendorf)
+- [#396](https://github.com/tardis-sn/tardis/pull/396) added virt_packet properties to to_hdf5 list (Kromer plot) (@unoebauer)
+- [#391](https://github.com/tardis-sn/tardis/pull/391) More work on cmontecarlo.c and the unit tests (@mreineck)
+- [#364](https://github.com/tardis-sn/tardis/pull/364) added tardis stats (@wkerzendorf)
+- [#392](https://github.com/tardis-sn/tardis/pull/392) Consistency between old virtual packet arrays and new ones introduced in PR 384 (@unoebauer)
+- [#389](https://github.com/tardis-sn/tardis/pull/389) changes to address issue #388 (@mreineck)
+- [#386](https://github.com/tardis-sn/tardis/pull/386) improve inlining specifications and fix a few problems (@mreineck)
+- [#384](https://github.com/tardis-sn/tardis/pull/384) Minor changes in Monte Carlo and model part for Kromer plots (@unoebauer)
+- [#374](https://github.com/tardis-sn/tardis/pull/374) WIP: Helium approx. (@wkerzendorf)
+- [#382](https://github.com/tardis-sn/tardis/pull/382) Improvements to plasma graph (@aoifeboyle)
+- [#381](https://github.com/tardis-sn/tardis/pull/381) Fix to plasma issue with GUI. (@aoifeboyle)
+- [#379](https://github.com/tardis-sn/tardis/pull/379) Fix of to_hdf5. (@aoifeboyle)
+- [#377](https://github.com/tardis-sn/tardis/pull/377) Plasma static methods (@aoifeboyle)
+- [#373](https://github.com/tardis-sn/tardis/pull/373) Removing test_plasma_nlte.py. (@aoifeboyle)
+- [#372](https://github.com/tardis-sn/tardis/pull/372) Correcting some old plasma tests. (@aoifeboyle)
+- [#304](https://github.com/tardis-sn/tardis/pull/304) Plasma restructure (@wkerzendorf)
+- [#370](https://github.com/tardis-sn/tardis/pull/370) Removed some tests temporarily. (@aoifeboyle)
+- [#369](https://github.com/tardis-sn/tardis/pull/369) Removed import plasma_array (@aoifeboyle)
+- [#368](https://github.com/tardis-sn/tardis/pull/368) Fixing plasma merge (@aoifeboyle)
+- [#367](https://github.com/tardis-sn/tardis/pull/367) preparing for the new container archictecture used by travis (@wkerzendorf)
+- [#365](https://github.com/tardis-sn/tardis/pull/365) LTE Plasma Test (@aoifeboyle)
+- [#361](https://github.com/tardis-sn/tardis/pull/361) Added formulae to graph. (@aoifeboyle)
+- [#360](https://github.com/tardis-sn/tardis/pull/360) Rebasedvirtrunner (@orbitfold, @wkerzendorf)
+- [#362](https://github.com/tardis-sn/tardis/pull/362) Adjusted stimulated emission factor for NLTE. (@aoifeboyle)
+- [#355](https://github.com/tardis-sn/tardis/pull/355) Add with-openmp to develop (@orbitfold)
+- [#354](https://github.com/tardis-sn/tardis/pull/354) added print statement for openmp (@wkerzendorf)
+- [#350](https://github.com/tardis-sn/tardis/pull/350) Tidying/Testing/Documenting Plasma (@aoifeboyle)
+- [#352](https://github.com/tardis-sn/tardis/pull/352) Attempt at solution. (@aoifeboyle)
+- [#330](https://github.com/tardis-sn/tardis/pull/330) [GSoC 2015 WIP] Testing other montecarlo functions (@kaushik94)
+- [#347](https://github.com/tardis-sn/tardis/pull/347) NLTE (@aoifeboyle)
+- [#325](https://github.com/tardis-sn/tardis/pull/325) Bound-free interactions (@chvogl)
+- [#344](https://github.com/tardis-sn/tardis/pull/344) Plasma/multiple outputs (@aoifeboyle)
+- [#346](https://github.com/tardis-sn/tardis/pull/346) linked the plasma documentation again (@wkerzendorf)
+- [#338](https://github.com/tardis-sn/tardis/pull/338) OpenMP WIP (@orbitfold)
+- [#343](https://github.com/tardis-sn/tardis/pull/343) Plasma/multi output (@wkerzendorf)
+- [#17](https://github.com/tardis-sn/tardis/pull/17) Fixes. (@aoifeboyle)
+- [#324](https://github.com/tardis-sn/tardis/pull/324) Gui package (WIP) (@gautam1168)
+- [#327](https://github.com/tardis-sn/tardis/pull/327) [GSoC 2015 MRG] Testing getters setters (@kaushik94)
+- [#322](https://github.com/tardis-sn/tardis/pull/322) Updating the gui documentation. (@gautam1168)
+- [#296](https://github.com/tardis-sn/tardis/pull/296) Gui with menubars(WIP) (@gautam1168)
+- [#320](https://github.com/tardis-sn/tardis/pull/320) virtual packets frequency cut (@unoebauer)
+- [#314](https://github.com/tardis-sn/tardis/pull/314) Installation FAQ (@wkerzendorf)
+- [#310](https://github.com/tardis-sn/tardis/pull/310) A more detailed description of the montecarlo process (@wkerzendorf)
+- [#301](https://github.com/tardis-sn/tardis/pull/301) [GSoC 2015 MRG] Restructuring Montecarlo (@kaushik94)
+- [#234](https://github.com/tardis-sn/tardis/pull/234) Removing usage of yield in test_utils.py (@kaushik94)
+- [#299](https://github.com/tardis-sn/tardis/pull/299) Test of model_reader.py (@wkerzendorf, @ssim)
+- [#288](https://github.com/tardis-sn/tardis/pull/288) -fixed discrepancy concerning hold_iterations (@unoebauer)
+- [#286](https://github.com/tardis-sn/tardis/pull/286) Proposal for a new to HD5 function. (@mklauser)
+- [#283](https://github.com/tardis-sn/tardis/pull/283) fixed the reader for the older Paper1 format yaml files (@wkerzendorf)
+- [#269](https://github.com/tardis-sn/tardis/pull/269) Miscellaneous README changes (@iKevinY)
+- [#251](https://github.com/tardis-sn/tardis/pull/251) gui.py and running.rst edited for PyQt4 and PySide (@gautam1168)
+- [#250](https://github.com/tardis-sn/tardis/pull/250) Docs/pip reqs (@wkerzendorf)
+- [#244](https://github.com/tardis-sn/tardis/pull/244) added coverage back (@wkerzendorf)
+- [#240](https://github.com/tardis-sn/tardis/pull/240) rename of pip-requirements to conda-requirements (@wkerzendorf)
+- [#225](https://github.com/tardis-sn/tardis/pull/225) Test added in test_atomic.py (@vaibhav4595)
+- [#223](https://github.com/tardis-sn/tardis/pull/223) Update git_workflow.rst (@ujjwalwahi)
+
+### 1.0rc3 (2015/03/03 12:54 +00:00)
+- [#219](https://github.com/tardis-sn/tardis/pull/219) fixing run_tardis (@wkerzendorf)
+
+### 1.0.dev1419 (2015/02/19 13:58 +00:00)
+- [#218](https://github.com/tardis-sn/tardis/pull/218) Docs/anaconda install (@wkerzendorf)
+- [#217](https://github.com/tardis-sn/tardis/pull/217) Docs/fixing pip requirements (@wkerzendorf)
+- [#216](https://github.com/tardis-sn/tardis/pull/216) some fixes to the gui so it works with pyside (@wkerzendorf)
+- [#214](https://github.com/tardis-sn/tardis/pull/214) Preparing the docs for V1 (@wkerzendorf)
+- [#210](https://github.com/tardis-sn/tardis/pull/210) a restructure of the C-file file structure (@wkerzendorf, @mklauser)
+- [#7](https://github.com/tardis-sn/tardis/pull/7) include .c in montecarlo/src/ for the randomkit files (@mklauser)
+- [#209](https://github.com/tardis-sn/tardis/pull/209) Testing/pandas version info (@wkerzendorf)
+- [#205](https://github.com/tardis-sn/tardis/pull/205) As simpler `run_tardis` (@wkerzendorf)
+- [#206](https://github.com/tardis-sn/tardis/pull/206) Minor but critical fix to binary search (reverse) (@ssim)
+- [#199](https://github.com/tardis-sn/tardis/pull/199) Gnuify cmontecarlo.c and cmontecarlo.h files (@orbitfold)
+- [#203](https://github.com/tardis-sn/tardis/pull/203) Docs/reporting bugs (@wkerzendorf)
+- [#201](https://github.com/tardis-sn/tardis/pull/201) A critical warning was added to the model indicating that no packet has left the simulation through the outer boundary. (@mklauser)
+- [#200](https://github.com/tardis-sn/tardis/pull/200) added a new location for the atomic data. (@wkerzendorf)
+- [#196](https://github.com/tardis-sn/tardis/pull/196) New binary search added (@mklauser)
+- [#169](https://github.com/tardis-sn/tardis/pull/169) fix for #168 (@mklauser)
+- [#194](https://github.com/tardis-sn/tardis/pull/194) Setup/fix requirements (@wkerzendorf)
+- [#188](https://github.com/tardis-sn/tardis/pull/188) A macro to automagically fix inline issues (@orbitfold)
+- [#190](https://github.com/tardis-sn/tardis/pull/190) General/fixing unit problems (@wkerzendorf)
+- [#183](https://github.com/tardis-sn/tardis/pull/183) Added colon (@sofiatti)
+- [#179](https://github.com/tardis-sn/tardis/pull/179) making sure that if last_no_of_packets is not specified that it is set t... (@wkerzendorf)
+- [#178](https://github.com/tardis-sn/tardis/pull/178) Atomic/fix reprepare (@wkerzendorf)
+- [#177](https://github.com/tardis-sn/tardis/pull/177) added from_yaml and from_config_dict to ConfigurationNameSpace (@wkerzendorf)
+- [#175](https://github.com/tardis-sn/tardis/pull/175) Fix a few problems in cmontecarlo.c (@orbitfold, @wkerzendorf)
+- [#174](https://github.com/tardis-sn/tardis/pull/174) fixes added for clang compile on mac (@wkerzendorf)
+- [#171](https://github.com/tardis-sn/tardis/pull/171) Fix issues when using clang compiler (issue #170) (@orbitfold)
+- [#167](https://github.com/tardis-sn/tardis/pull/167) fix for #165 (@mklauser, @wkerzendorf)
+- [#3](https://github.com/tardis-sn/tardis/pull/3) testing the new t_inner fix (@wkerzendorf)
+- [#164](https://github.com/tardis-sn/tardis/pull/164) Config/toggle validation (@wkerzendorf)
+- [#151](https://github.com/tardis-sn/tardis/pull/151) WIP Montecarlo C Rewrite (@orbitfold)
+- [#160](https://github.com/tardis-sn/tardis/pull/160) how to get constant density? broken? (@wkerzendorf)
+
+### 0.9.2 (2014/06/12 23:37 +00:00)
+- [#158](https://github.com/tardis-sn/tardis/pull/158) updated astropy_helpers version (@wkerzendorf)
+- [#157](https://github.com/tardis-sn/tardis/pull/157) added yaml to pip-requirements and linked the doc pip-requirements to this (@wkerzendorf)
+- [#154](https://github.com/tardis-sn/tardis/pull/154) renamed Config to ConfigurationValidator (@wkerzendorf)
+- [#153](https://github.com/tardis-sn/tardis/pull/153) General mixup of 0.9.2b1 (@wkerzendorf)
+- [#152](https://github.com/tardis-sn/tardis/pull/152) importing problems with new C functions? (@wkerzendorf)
+- [#149](https://github.com/tardis-sn/tardis/pull/149) Edits to docs (@ssim)
+- [#150](https://github.com/tardis-sn/tardis/pull/150) Montecarlo flowchart (@orbitfold)
+- [#148](https://github.com/tardis-sn/tardis/pull/148) fixed config_validator log_lsun check (@wkerzendorf)
+- [#142](https://github.com/tardis-sn/tardis/pull/142) WIP Porting utility functions to C (issue #131) (@orbitfold)
+- [#137](https://github.com/tardis-sn/tardis/pull/137) TRAVIS passes. (@wkerzendorf)
+- [#143](https://github.com/tardis-sn/tardis/pull/143) Updating configuration name space (@wkerzendorf)
+- [#136](https://github.com/tardis-sn/tardis/pull/136) Updating the config reader to work with the validator (@wkerzendorf, @mklauser)
+- [#145](https://github.com/tardis-sn/tardis/pull/145) Adding full spectrum generation test to TRAVIS (@wkerzendorf)
+- [#144](https://github.com/tardis-sn/tardis/pull/144) Setup/switch to astropy helpers (@wkerzendorf)
+- [#6](https://github.com/tardis-sn/tardis/pull/6) Pr136 (@mklauser)
+- [#5](https://github.com/tardis-sn/tardis/pull/5) Pr136 (@mklauser)
+- [#4](https://github.com/tardis-sn/tardis/pull/4) Pr136 (@mklauser)
+- [#3](https://github.com/tardis-sn/tardis/pull/3) Pr136 (@mklauser)
+- [#2](https://github.com/tardis-sn/tardis/pull/2) bug fix for the container handling. ToDo Remove remove general except in... (@mklauser)
+- [#135](https://github.com/tardis-sn/tardis/pull/135) Adding documentation for d_inner and d_outer calculation (@wkerzendorf)
+- [#132](https://github.com/tardis-sn/tardis/pull/132) i try to rebase the dp to the master (@mklauser)
+- [#134](https://github.com/tardis-sn/tardis/pull/134) Test high temperature - outside of interpolation range of zeta factor (@wkerzendorf)
+- [#129](https://github.com/tardis-sn/tardis/pull/129) Re-implement binary_search in C (@orbitfold)
+- [#127](https://github.com/tardis-sn/tardis/pull/127) Docs edit only ("accessing physical quantities") (@ssim)
+- [#116](https://github.com/tardis-sn/tardis/pull/116) Adding documentation for Workflow (@wkerzendorf, @ssim)
+- [#112](https://github.com/tardis-sn/tardis/pull/112) NLTE fixes - discussion needed before merge - relates to #109 (@ssim, @wkerzendorf)
+- [#11](https://github.com/tardis-sn/tardis/pull/11) fixing up the NLTE tests (@wkerzendorf)
+- [#10](https://github.com/tardis-sn/tardis/pull/10) Plasma/fix nlte tests (@wkerzendorf)
+- [#122](https://github.com/tardis-sn/tardis/pull/122) proposed restructing of binary search/line search (@ssim, @wkerzendorf, @mklauser)
+- [#9](https://github.com/tardis-sn/tardis/pull/9) Issue 123two (@mklauser)
+- [#124](https://github.com/tardis-sn/tardis/pull/124) updated current_public_table.rst (@wkerzendorf)
+- [#7](https://github.com/tardis-sn/tardis/pull/7) Fix line search (@wkerzendorf)
+- [#6](https://github.com/tardis-sn/tardis/pull/6) updated documentation to numpydoc standard (@wkerzendorf)
+- [#121](https://github.com/tardis-sn/tardis/pull/121) warning added for density file readin outside tabulated range (@ssim)
+- [#119](https://github.com/tardis-sn/tardis/pull/119) Fix to deal with possible problem in end of line list (@ssim)
+- [#118](https://github.com/tardis-sn/tardis/pull/118) Fix for the issue #84
 Pull request for fixes / documentation edits related to the profiles (@ssim, @mklauser)
+- [#91](https://github.com/tardis-sn/tardis/pull/91) Documentation update to download atomic databases (@wkerzendorf)
+- [#110](https://github.com/tardis-sn/tardis/pull/110) #106 suggestion for private variable names (@mklauser, @ssim)
+- [#111](https://github.com/tardis-sn/tardis/pull/111) minor fixed / logger statements (@ssim)
+- [#97](https://github.com/tardis-sn/tardis/pull/97) Fix for issue #81: Add warning if w > 1. (@thegyro)
+- [#92](https://github.com/tardis-sn/tardis/pull/92) Adding a simple test to run a full calculation (@wkerzendorf)
+- [#101](https://github.com/tardis-sn/tardis/pull/101) Fix for Issue #88: Moved test functions for tardis.util from test_config_reader (@thegyro)
+- [#94](https://github.com/tardis-sn/tardis/pull/94) Fix coveralls (@wkerzendorf)
+- [#87](https://github.com/tardis-sn/tardis/pull/87) Added --profile and --profiler_log_file command line arguments to enable... (@orbitfold)
+
+### 0.9.1 (2014/02/04 01:51 +00:00)
+- [#74](https://github.com/tardis-sn/tardis/pull/74) fixed manifest to incluse ez_setup.py and setuptools_bootstrap.py. fixes... (@wkerzendorf)
+- [#78](https://github.com/tardis-sn/tardis/pull/78) cosmetic fixes (@ssim)
+- [#77](https://github.com/tardis-sn/tardis/pull/77) Docs edit (@ssim, @wkerzendorf)
+- [#1](https://github.com/tardis-sn/tardis/pull/1) Docs fix (@wkerzendorf, @ssim)
+- [#76](https://github.com/tardis-sn/tardis/pull/76) stuff with abundance profile readin (@ssim)
+- [#75](https://github.com/tardis-sn/tardis/pull/75) work on gui fixing (@ssim)
+- [#72](https://github.com/tardis-sn/tardis/pull/72) documentation update for release (@wkerzendorf)
+- [#71](https://github.com/tardis-sn/tardis/pull/71) New configuration style (@wkerzendorf)
+- [#70](https://github.com/tardis-sn/tardis/pull/70) added simple coveralls.io in there (@wkerzendorf)
+- [#69](https://github.com/tardis-sn/tardis/pull/69) Atomic/atomic symbols (@wkerzendorf)
+- [#67](https://github.com/tardis-sn/tardis/pull/67) Config/ascii file reader (@wkerzendorf)
+- [#68](https://github.com/tardis-sn/tardis/pull/68) Tests/fixing2 (@wkerzendorf)
+- [#61](https://github.com/tardis-sn/tardis/pull/61) gui fix (@ssim)
+- [#60](https://github.com/tardis-sn/tardis/pull/60) General bugfixing (@wkerzendorf)
+- [#59](https://github.com/tardis-sn/tardis/pull/59) General bugfixing (@wkerzendorf, @nathanielatom, @ssim, @maryampatel)
+- [#54](https://github.com/tardis-sn/tardis/pull/54) Montecarlo/reflection (@ssim)
+- [#52](https://github.com/tardis-sn/tardis/pull/52) Montecarlo/reflection (@ssim, @wkerzendorf, @maryampatel, @nathanielatom)
+- [#51](https://github.com/tardis-sn/tardis/pull/51) Model/optimizig (@nathanielatom)
+- [#50](https://github.com/tardis-sn/tardis/pull/50) Gui/span (@nathanielatom)
+- [#49](https://github.com/tardis-sn/tardis/pull/49) Gui/span (@nathanielatom)
+- [#48](https://github.com/tardis-sn/tardis/pull/48) Gui/span (@nathanielatom, @wkerzendorf, @maryampatel)
+- [#39](https://github.com/tardis-sn/tardis/pull/39) General bugfixing (@wkerzendorf, @nathanielatom, @maryampatel)
+- [#46](https://github.com/tardis-sn/tardis/pull/46) Gui/dialogue (@nathanielatom, @wkerzendorf)
+- [#41](https://github.com/tardis-sn/tardis/pull/41) Gui/docs (@nathanielatom)
+- [#40](https://github.com/tardis-sn/tardis/pull/40) Gui/matplotlib figure (@nathanielatom, @maryampatel)
+- [#34](https://github.com/tardis-sn/tardis/pull/34) General bugfixing (@wkerzendorf)
+- [#32](https://github.com/tardis-sn/tardis/pull/32) Plasma/testing2 (@maryampatel)
+- [#29](https://github.com/tardis-sn/tardis/pull/29) General bugfixing
 looks good to me (@wkerzendorf)
+- [#28](https://github.com/tardis-sn/tardis/pull/28) The same as last time  but with small changes. (@mklauser)
+- [#26](https://github.com/tardis-sn/tardis/pull/26) Plasma/bound free (@mklauser)
+- [#25](https://github.com/tardis-sn/tardis/pull/25) Simulation/run single simulation (@wkerzendorf)
+
+### v0.9a (2013/02/14 21:15 +00:00)
+- [#24](https://github.com/tardis-sn/tardis/pull/24) Montecarlo/extract - seems fine merging (@ssim)
+- [#22](https://github.com/tardis-sn/tardis/pull/22) Montecarlo/fix convergence (@wkerzendorf, @ssim)
+- [#20](https://github.com/tardis-sn/tardis/pull/20) Plasma/testing (@maryampatel)
+- [#18](https://github.com/tardis-sn/tardis/pull/18) Docs/fixdocs (@maryampatel)
+- [#17](https://github.com/tardis-sn/tardis/pull/17) Docs/fixdocs (@maryampatel)
+- [#16](https://github.com/tardis-sn/tardis/pull/16) Doc/atomic
 preliminary merge (@maryampatel)
+- [#14](https://github.com/tardis-sn/tardis/pull/14) Implemented all changes (@maryampatel)
+- [#13](https://github.com/tardis-sn/tardis/pull/13) Changed the main documentation page (@maryampatel)
\ No newline at end of file
diff --git a/CHANGELOG.rst b/CHANGELOG.rst
deleted file mode 100644
index c9e77b9e4f5..00000000000
--- a/CHANGELOG.rst
+++ /dev/null
@@ -1,788 +0,0 @@
-Change Log
-----------
-
-upcoming (2018/04/06 13:33 +00:00)
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
--  `#816 <https://github.com/tardis-sn/tardis/pull/816>`__ Remove old
-   and broken badges (@unoebauer)
--  `#814 <https://github.com/tardis-sn/tardis/pull/814>`__ Fix numpydoc
-   problem (@wkerzendorf, @unoebauer)
-
-v2.0 (2018/04/05 13:03 +00:00)
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
--  `#812 <https://github.com/tardis-sn/tardis/pull/812>`__ Update of
-   documentation (@unoebauer)
--  `#809 <https://github.com/tardis-sn/tardis/pull/809>`__ fix
-   dependencies for tardis conda env (#809) (@wkerzendorf)
--  `#761 <https://github.com/tardis-sn/tardis/pull/761>`__ Add caching
-   for integrated spectrum: Fix #760 (@unoebauer)
--  `#715 <https://github.com/tardis-sn/tardis/pull/715>`__ Merge
-   'generate\_reference\_path' and 'reference\_path' in integration
-   tests (bug #672) (@rinklejain)
--  `#801 <https://github.com/tardis-sn/tardis/pull/801>`__ Decay of
-   isotopes branch (@wkerzendorf, @vg3095, @pfreddy)
--  `#806 <https://github.com/tardis-sn/tardis/pull/806>`__ Fix reference
-   dictionary problem (@pfreddy)
--  `#803 <https://github.com/tardis-sn/tardis/pull/803>`__ include yml
-   files in MANIFEST (@wkerzendorf)
--  `#802 <https://github.com/tardis-sn/tardis/pull/802>`__ Fix for PR
-   #801 (@vg3095)
--  `#799 <https://github.com/tardis-sn/tardis/pull/799>`__
-   tardis/plasma/standard\_plasmas.py: old database files warning
-   (@laudb)
--  `#797 <https://github.com/tardis-sn/tardis/pull/797>`__ Minor
-   Updates: Fixes for #521 and #699 (@unoebauer)
--  `#796 <https://github.com/tardis-sn/tardis/pull/796>`__ Prevent
-   pandas SettingWithCopyWarning by copying DataFrames when slicing
-   (@lukeshingles)
--  `#795 <https://github.com/tardis-sn/tardis/pull/795>`__ Force
-   deactivate LaTeX in GUI - Fix #441 (@unoebauer)
--  `#793 <https://github.com/tardis-sn/tardis/pull/793>`__ Add pyside to
-   requirements (needed for GUI) (@wkerzendorf, @unoebauer)
--  `#794 <https://github.com/tardis-sn/tardis/pull/794>`__ add new
-   readthedocs.yml (@wkerzendorf)
--  `#792 <https://github.com/tardis-sn/tardis/pull/792>`__ Fix
-   compatibility with networkx 2.0 (@lukeshingles)
--  `#791 <https://github.com/tardis-sn/tardis/pull/791>`__ Propagate
-   changes to the line index into the GUI code (@yeganer)
--  `#786 <https://github.com/tardis-sn/tardis/pull/786>`__ The final
-   carsus merge (@yeganer, @ftsamis, @mishinma)
--  `#782 <https://github.com/tardis-sn/tardis/pull/782>`__ Plasma
-   write\_to\_tex/dot unit tests (@vg3095)
--  `#781 <https://github.com/tardis-sn/tardis/pull/781>`__ Omit coverage
-   of test related files (@vg3095)
--  `#785 <https://github.com/tardis-sn/tardis/pull/785>`__ [DOC] Update
-   Running tests doc (@vg3095)
--  `#774 <https://github.com/tardis-sn/tardis/pull/774>`__ Replace
-   Comparison values in Plasma Unit Tests with reference HDF file
-   (@vg3095)
--  `#780 <https://github.com/tardis-sn/tardis/pull/780>`__
-   LevelBoltzmannFactorNLTE.from\_config is now a staticmethod
-   (@yeganer)
--  `#778 <https://github.com/tardis-sn/tardis/pull/778>`__ Fix NLTE
-   (@yeganer)
--  `#776 <https://github.com/tardis-sn/tardis/pull/776>`__ Fix
-   compatibility bug in radiative\_properties (@yeganer)
--  `#779 <https://github.com/tardis-sn/tardis/pull/779>`__ Save coverage
-   report when tests use tardis-refdata (@vg3095)
--  `#775 <https://github.com/tardis-sn/tardis/pull/775>`__ Transition
-   from atomic-dataset config option to tardis-refdata (@vg3095)
--  `#772 <https://github.com/tardis-sn/tardis/pull/772>`__ [TEP007]
-   CMFGEN density parser (@vg3095)
--  `#771 <https://github.com/tardis-sn/tardis/pull/771>`__ [TEP007] Add
-   cmfgen2tardis script (@vg3095)
--  `#757 <https://github.com/tardis-sn/tardis/pull/757>`__ [TEP007]
-   Decay and merge isotopic abundance dataframe (@vg3095)
--  `#769 <https://github.com/tardis-sn/tardis/pull/769>`__ [TEP014]
-   [DOC] Updated to\_hdf notebook (@vg3095)
--  `#759 <https://github.com/tardis-sn/tardis/pull/759>`__ Formal
-   Integral: including electron scattering (@unoebauer, @yeganer)
--  `#768 <https://github.com/tardis-sn/tardis/pull/768>`__ [TEP014]
-   Simulation HDF and deprecated to\_hdf cleanup. (@vg3095)
--  `#773 <https://github.com/tardis-sn/tardis/pull/773>`__ Update
-   Documentation (@unoebauer)
--  `#767 <https://github.com/tardis-sn/tardis/pull/767>`__ [TEP007] Docs
-   for isotope config (@vg3095)
--  `#764 <https://github.com/tardis-sn/tardis/pull/764>`__ [TEP007]
-   Isotope stratified file support (@vg3095)
--  `#752 <https://github.com/tardis-sn/tardis/pull/752>`__ [TEP014]
-   PlasmaWriterMixin (@vg3095)
--  `#748 <https://github.com/tardis-sn/tardis/pull/748>`__ [TEP014]
-   Update Runner and Spectrum classes to use HDFWriter + Unit Tests
-   (@vg3095)
--  `#762 <https://github.com/tardis-sn/tardis/pull/762>`__ [TEP007]
-   Isotope uniform config option (@vg3095)
--  `#765 <https://github.com/tardis-sn/tardis/pull/765>`__ Attempt to
-   fix up the GUI (@ssim, @unoebauer)
--  `#13 <https://github.com/tardis-sn/tardis/pull/13>`__ Introduce
-   proper masking for GUI (addition to PR #765) (@unoebauer)
--  `#1 <https://github.com/tardis-sn/tardis/pull/1>`__ Streamline the
-   OMP implementation (@yeganer)
--  `#756 <https://github.com/tardis-sn/tardis/pull/756>`__ [TEP007]
-   [WIP] Isotope Abundances class (@vg3095, @wkerzendorf)
--  `#758 <https://github.com/tardis-sn/tardis/pull/758>`__ Add new
-   version to tardis\_env27 and add pyne (@wkerzendorf)
--  `#753 <https://github.com/tardis-sn/tardis/pull/753>`__ [TEP014][DOC]
-   HDFWriter Documentation (@vg3095)
--  `#740 <https://github.com/tardis-sn/tardis/pull/740>`__ [GSoC] Formal
-   integral Project (@yeganer)
--  `#747 <https://github.com/tardis-sn/tardis/pull/747>`__ [TEP014]
-   Update Model and Density classes to use HDFWriter + Unit Tests
-   (@vg3095)
--  `#750 <https://github.com/tardis-sn/tardis/pull/750>`__ [TEP005][QOL]
-   Add MontecarloRunner.spectrum\_integrated (@yeganer)
--  `#749 <https://github.com/tardis-sn/tardis/pull/749>`__ [TEP014]
-   Change name of HDFWriter to HDFWriterMixin (@vg3095)
--  `#745 <https://github.com/tardis-sn/tardis/pull/745>`__ [TEP005][DOC]
-   Documentation (@yeganer)
--  `#751 <https://github.com/tardis-sn/tardis/pull/751>`__ [QOL] Add
-   default axis to TARDISSpectrum.plot (@yeganer)
--  `#743 <https://github.com/tardis-sn/tardis/pull/743>`__ Fix bug in
-   plasma (@yeganer)
--  `#744 <https://github.com/tardis-sn/tardis/pull/744>`__ [TEP014]
-   Added HDFWriter class + Unit Tests (@vg3095)
--  `#746 <https://github.com/tardis-sn/tardis/pull/746>`__
-   [TEP005][CONFIG] Prevent incompatible configurations (@yeganer)
--  `#741 <https://github.com/tardis-sn/tardis/pull/741>`__ Add unit
-   tests for the formal integral (@yeganer)
--  `#742 <https://github.com/tardis-sn/tardis/pull/742>`__ Fix clash in
-   RTD dependencies (@yeganer)
--  `#735 <https://github.com/tardis-sn/tardis/pull/735>`__ Move common
-   ctest fixtures into conftest.py (@yeganer)
--  `#729 <https://github.com/tardis-sn/tardis/pull/729>`__ Refactor
-   spectrum (@yeganer)
--  `#730 <https://github.com/tardis-sn/tardis/pull/730>`__ Fix
-   test\_plasma\_simple not skipping properly (@yeganer)
--  `#712 <https://github.com/tardis-sn/tardis/pull/712>`__ Colorize
-   Logger (@vg3095)
--  `#718 <https://github.com/tardis-sn/tardis/pull/718>`__ Unit test for
-   untested method of montecarlo simulation code (@suyashgupta20)
--  `#724 <https://github.com/tardis-sn/tardis/pull/724>`__ Rebase PR
-   #678 (@yeganer)
--  `#709 <https://github.com/tardis-sn/tardis/pull/709>`__ Add note
-   about broken GUI to docu (@unoebauer)
--  `#708 <https://github.com/tardis-sn/tardis/pull/708>`__ Add new
-   installation instructions (@wkerzendorf)
--  `#704 <https://github.com/tardis-sn/tardis/pull/704>`__ Fix ignoring
-   model tests (@ftsamis)
--  `#700 <https://github.com/tardis-sn/tardis/pull/700>`__ Add
-   contributing guidelines (@wkerzendorf)
--  `#686 <https://github.com/tardis-sn/tardis/pull/686>`__ converted
-   spectrum\_frequency (@chinmay0301)
--  `#696 <https://github.com/tardis-sn/tardis/pull/696>`__ Add missing
-   diagnostics property to runner's to\_hdf list (@unoebauer)
--  `#694 <https://github.com/tardis-sn/tardis/pull/694>`__ Significantly
-   reduce peak memory usage when vpacket logging is enabled (@ftsamis)
--  `#682 <https://github.com/tardis-sn/tardis/pull/682>`__ Import
-   montecarlo.base in the **init** module of the package. (@ftsamis)
--  `#670 <https://github.com/tardis-sn/tardis/pull/670>`__ Integrate
-   continuum interactions into cmontecarlo (@chvogl)
--  `#652 <https://github.com/tardis-sn/tardis/pull/652>`__ [TEP006]
-   Aggregate TARDIS restructure and configuration system cleanup
-   (@ftsamis)
--  `#677 <https://github.com/tardis-sn/tardis/pull/677>`__ Update link
-   to tardis\_example.yml in documentation - Fix #676 (@unoebauer)
--  `#674 <https://github.com/tardis-sn/tardis/pull/674>`__ Change
-   matplotlib backend - fix test\_integration remote plotting issue
-   (@unoebauer)
--  `#664 <https://github.com/tardis-sn/tardis/pull/664>`__ Kd final test
-   (@wkerzendorf, @kdexd, @yeganer)
--  `#21 <https://github.com/tardis-sn/tardis/pull/21>`__ fKd final test
-   (@yeganer)
--  `#668 <https://github.com/tardis-sn/tardis/pull/668>`__ change to
-   tardis atom data on git lfs (@wkerzendorf)
--  `#666 <https://github.com/tardis-sn/tardis/pull/666>`__ Remove News
-   from main TARDIS github page (@unoebauer)
--  `#667 <https://github.com/tardis-sn/tardis/pull/667>`__ Update SOCIS
-   and GSOC students credits (@unoebauer)
--  `#665 <https://github.com/tardis-sn/tardis/pull/665>`__ Add to\_hdf
-   compression (@yeganer)
--  `#663 <https://github.com/tardis-sn/tardis/pull/663>`__ Develop
-   (@kdexd)
--  `#657 <https://github.com/tardis-sn/tardis/pull/657>`__ Require
-   pyyaml 3.12 (@ftsamis)
--  `#659 <https://github.com/tardis-sn/tardis/pull/659>`__ Update
-   installation docs (@ftsamis)
--  `#653 <https://github.com/tardis-sn/tardis/pull/653>`__ Facility to
-   provide per-setup atom data as well as save report locally. (@kdexd)
--  `#641 <https://github.com/tardis-sn/tardis/pull/641>`__ Fix detailed
-   radiative rates (@yeganer)
--  `#642 <https://github.com/tardis-sn/tardis/pull/642>`__ Use
-   pytest-html==1.10.0, modify DokuReport class accordingly. (@kdexd)
--  `#630 <https://github.com/tardis-sn/tardis/pull/630>`__
-   [IntegrationTests] Overview page on Dokuwiki. Running the integration
-   tests will update an overview page on DokuWiki. (@kdexd)
--  `#620 <https://github.com/tardis-sn/tardis/pull/620>`__ Runner script
-   to automate execution of integration tests. (@kdexd)
--  `#628 <https://github.com/tardis-sn/tardis/pull/628>`__ Remove
-   exponent property from yaml files with exponential density (@ftsamis)
--  `#626 <https://github.com/tardis-sn/tardis/pull/626>`__ Revert "Add
-   exponent as a property for exponential density" (@ftsamis)
--  `#542 <https://github.com/tardis-sn/tardis/pull/542>`__ Updates to He
-   NLTE treatment. (@aoifeboyle)
--  `#612 <https://github.com/tardis-sn/tardis/pull/612>`__ Add facility
-   to generate and accept HDF files as reference data for Integration
-   Tests. (@kdexd)
--  `#614 <https://github.com/tardis-sn/tardis/pull/614>`__ Omit the
-   integration\_tests when running coveralls (@yeganer)
--  `#619 <https://github.com/tardis-sn/tardis/pull/619>`__ Fixed
-   incorrect name in error message (@Tobychev)
--  `#618 <https://github.com/tardis-sn/tardis/pull/618>`__ to\_hdf: If
-   only the last run is stored, do not add a counter in the name
-   (@ftsamis)
--  `#617 <https://github.com/tardis-sn/tardis/pull/617>`__ Add a to\_hdf
-   method on TARDISSpectrum (@ftsamis)
--  `#600 <https://github.com/tardis-sn/tardis/pull/600>`__ Parametrize
-   the Slow Test class with two setups. (@kdexd)
--  `#613 <https://github.com/tardis-sn/tardis/pull/613>`__ Fix bug in
-   montecarlo.pyx (@yeganer)
--  `#595 <https://github.com/tardis-sn/tardis/pull/595>`__ Line
-   absorption rate estimator (@Tobychev)
--  `#606 <https://github.com/tardis-sn/tardis/pull/606>`__ Merge to\_hdf
-   (@ftsamis, @wkerzendorf)
--  `#585 <https://github.com/tardis-sn/tardis/pull/585>`__ [TEP002] Add
-   a to\_hdf method to the MontecarloRunner (#585) (@ftsamis)
--  `#597 <https://github.com/tardis-sn/tardis/pull/597>`__ Use
-   abundances, densities filepaths relative to w7 config file. (@kdexd)
--  `#569 <https://github.com/tardis-sn/tardis/pull/569>`__ Added a conda
-   environment for tardis (@wkerzendorf)
--  `#565 <https://github.com/tardis-sn/tardis/pull/565>`__ Change the
-   way AtomData quantities are initialized (@yeganer)
--  `#599 <https://github.com/tardis-sn/tardis/pull/599>`__ Update the
-   tardis\_example tar file provided in the documentation. (@ftsamis)
--  `#598 <https://github.com/tardis-sn/tardis/pull/598>`__ Fix
-   convergence handling in run\_legacy\_simulation - fix issue #593
-   (@unoebauer)
--  `#590 <https://github.com/tardis-sn/tardis/pull/590>`__ Link images
-   of comparison plots in DokuReport using hookwrapper. (@kdexd)
--  `#591 <https://github.com/tardis-sn/tardis/pull/591>`__ Fix path of
-   CSS and JS files used in html report. (@kdexd)
--  `#594 <https://github.com/tardis-sn/tardis/pull/594>`__ Provide
-   tardis.yaml\_load shortcut (@yeganer)
--  `#592 <https://github.com/tardis-sn/tardis/pull/592>`__ Fix virt
-   energy (@yeganer)
--  `#583 <https://github.com/tardis-sn/tardis/pull/583>`__ Subclass
-   pytest-html's HTMLReport to DokuReport class for report generation
-   and upload (@kdexd)
--  `#587 <https://github.com/tardis-sn/tardis/pull/587>`__ Move the
-   three spectra attributes from Radial1DModel to MontecarloRunner
-   (@ftsamis)
--  `#578 <https://github.com/tardis-sn/tardis/pull/578>`__ Shift slow
-   test related pytest hooks in lower level conftest.py (#578) (@kdexd)
--  `#581 <https://github.com/tardis-sn/tardis/pull/581>`__ Update
-   several files to match package\_template (@yeganer)
--  `#576 <https://github.com/tardis-sn/tardis/pull/576>`__
-   [config-system] Validator rewrite: Use jsonschema (@ftsamis)
--  `#575 <https://github.com/tardis-sn/tardis/pull/575>`__ Replace
-   misused calls to yaml.load with a helper function. (@ftsamis)
--  `#570 <https://github.com/tardis-sn/tardis/pull/570>`__ Enable
-   generation of html report of integration tests, and upload to
-   dokuwiki. (@kdexd)
--  `#574 <https://github.com/tardis-sn/tardis/pull/574>`__
-   tardis/base.py: Remove duplicate code from run\_tardis (@ftsamis)
--  `#573 <https://github.com/tardis-sn/tardis/pull/573>`__ io/util.py
-   (YAMLLoader): Use OrderedDict to store loaded YAML (@ftsamis)
--  `#572 <https://github.com/tardis-sn/tardis/pull/572>`__ Change the
-   way YAMLLoader resolves some properties (@ftsamis)
--  `#532 <https://github.com/tardis-sn/tardis/pull/532>`__ Documentation
-   overhaul (@unoebauer, @kdexd, @chvogl)
--  `#571 <https://github.com/tardis-sn/tardis/pull/571>`__
-   data/tardis\_config\_definition.yml: Set the exponent property as
-   mandatory when density is exponential. (#571) (@ftsamis)
--  `#566 <https://github.com/tardis-sn/tardis/pull/566>`__ Initial
-   laydown of comparison plots for TestW7. (#566) (@kdexd)
--  `#567 <https://github.com/tardis-sn/tardis/pull/567>`__ Accept
-   keyword arguments for Configuration.from\_yaml (@yeganer)
--  `#561 <https://github.com/tardis-sn/tardis/pull/561>`__ TestW7:
-   Assertions for spectrum quantities, fixture for handling baseline
-   data. (@kdexd)
--  `#515 <https://github.com/tardis-sn/tardis/pull/515>`__
-   [config-system] Add a custom YAML Loader to parse astropy quantities
-   (@ftsamis)
--  `#555 <https://github.com/tardis-sn/tardis/pull/555>`__ Use pytest's
-   monkeypatch.chdir to change the working directory in the
-   config\_reader tests (@ftsamis, @lukeshingles)
--  `#558 <https://github.com/tardis-sn/tardis/pull/558>`__ Integration
-   Test class for Stratified W7 setup. (@kdexd)
--  `#557 <https://github.com/tardis-sn/tardis/pull/557>`__ Enable
-   skipping slow tests. (@kdexd)
--  `#544 <https://github.com/tardis-sn/tardis/pull/544>`__ Continue
-   cmontecarlo tests refactor. Extend #530. (@kdexd)
--  `#543 <https://github.com/tardis-sn/tardis/pull/543>`__ Fix issue
-   #535: Treat rel. paths inside config relative to the config file
-   (@lukeshingles, @ftsamis)
--  `#1 <https://github.com/tardis-sn/tardis/pull/1>`__ Write tests for
-   the issue #535 fix. (@ftsamis)
--  `#551 <https://github.com/tardis-sn/tardis/pull/551>`__ Add SOCIS
-   2016 advertisement (@unoebauer)
--  `#547 <https://github.com/tardis-sn/tardis/pull/547>`__ Fix Issue
-   #548 (@kdexd)
--  `#545 <https://github.com/tardis-sn/tardis/pull/545>`__ added mailmap
-   to compile the commits for each person (#545) (@wkerzendorf)
--  `#539 <https://github.com/tardis-sn/tardis/pull/539>`__ Adding OSX to
-   our travis build (#539) (@wkerzendorf)
--  `#541 <https://github.com/tardis-sn/tardis/pull/541>`__ Move progress
-   bar update after calculation (#541) (@yeganer)
--  `#540 <https://github.com/tardis-sn/tardis/pull/540>`__ Mirroring C
-   enums in Python for CMontecarlo tests. (@kdexd)
--  `#538 <https://github.com/tardis-sn/tardis/pull/538>`__ Upgrading to
-   the new Readthedocs infrastructure (#538) (@wkerzendorf)
--  `#530 <https://github.com/tardis-sn/tardis/pull/530>`__ Refactor
-   cmontecarlo testing framework (@kdexd)
--  `#537 <https://github.com/tardis-sn/tardis/pull/537>`__ Ignore
-   invalid OpenMP nthreads values (#537) (@yeganer)
--  `#533 <https://github.com/tardis-sn/tardis/pull/533>`__ Remove
-   rpacket.recently\_crossed\_boundary flag (@yeganer)
--  `#514 <https://github.com/tardis-sn/tardis/pull/514>`__ Performance
-   (@yeganer)
--  `#531 <https://github.com/tardis-sn/tardis/pull/531>`__ Organize
-   headers in C-Extension (@yeganer)
--  `#526 <https://github.com/tardis-sn/tardis/pull/526>`__ Docs: Include
-   conda-requirements in installation.rst (@kdexd)
--  `#519 <https://github.com/tardis-sn/tardis/pull/519>`__
-   Documentation:Installation modify command (@yeganer)
--  `#510 <https://github.com/tardis-sn/tardis/pull/510>`__ Updates
-   requirements to solve libgfortran error. Fixes #509 (@kdexd)
--  `#495 <https://github.com/tardis-sn/tardis/pull/495>`__ Fix energy
-   conservation (@unoebauer)
--  `#486 <https://github.com/tardis-sn/tardis/pull/486>`__ Bugfix
-   radiative rates type detailed (@chvogl, @unoebauer)
--  `#488 <https://github.com/tardis-sn/tardis/pull/488>`__ Fix
-   indentation in c extension (@yeganer)
--  `#494 <https://github.com/tardis-sn/tardis/pull/494>`__ Fix #493
-   (@yeganer)
--  `#1 <https://github.com/tardis-sn/tardis/pull/1>`__ Add simple test
-   for j\_blue\_estimator (@unoebauer)
--  `#491 <https://github.com/tardis-sn/tardis/pull/491>`__ Include IDE
-   specific auto-generated files in .gitignore. Fixes #490 (@kdexd)
--  `#485 <https://github.com/tardis-sn/tardis/pull/485>`__ Montecarlo
-   progress (@yeganer)
--  `#457 <https://github.com/tardis-sn/tardis/pull/457>`__ Fix Issue
-   #454 (@yeganer)
--  `#484 <https://github.com/tardis-sn/tardis/pull/484>`__ Minor
-   improvement of vpacket logging scheme (@unoebauer)
--  `#479 <https://github.com/tardis-sn/tardis/pull/479>`__ added units
-   to test\_simulation.py (@mishinma)
--  `#469 <https://github.com/tardis-sn/tardis/pull/469>`__ Changed the
-   Link for AstroPy's dev workflow (@souravsingh)
--  `#481 <https://github.com/tardis-sn/tardis/pull/481>`__ Introcuding
-   safe\_malloc and safe\_realloc macros: fixes #480 (@unoebauer)
--  `#475 <https://github.com/tardis-sn/tardis/pull/475>`__ Reorganize
-   import statements in atomic.py (@Pratik151)
--  `#471 <https://github.com/tardis-sn/tardis/pull/471>`__ Quickfix to
-   solve Issue #455 and #464 (@yeganer)
--  `#472 <https://github.com/tardis-sn/tardis/pull/472>`__ fixed build
-   of documentation on readthedocs (@wkerzendorf)
--  `#461 <https://github.com/tardis-sn/tardis/pull/461>`__ Bugfix test
-   cmontecarlo (@yeganer)
--  `#452 <https://github.com/tardis-sn/tardis/pull/452>`__ Build fix and
-   nthreads fix - fixes #356 (@unoebauer)
--  `#450 <https://github.com/tardis-sn/tardis/pull/450>`__ Checking for
-   zero-volume cells: Fixes issue #79 (@unoebauer)
--  `#449 <https://github.com/tardis-sn/tardis/pull/449>`__ added test to
-   verify virtual spectrum (@unoebauer)
--  `#446 <https://github.com/tardis-sn/tardis/pull/446>`__ calculate
-   virtual spectrum independently of vpacket loggin - fixes #445
-   (@unoebauer)
--  `#440 <https://github.com/tardis-sn/tardis/pull/440>`__ started
-   addressing issue #436 (@unoebauer)
--  `#426 <https://github.com/tardis-sn/tardis/pull/426>`__ Simulation -
-   restructure (@wkerzendorf)
--  `#434 <https://github.com/tardis-sn/tardis/pull/434>`__ updated the
-   .travis.yml file to do a rehash before executing conda (@wkerzendorf)
--  `#433 <https://github.com/tardis-sn/tardis/pull/433>`__ Optional
-   vpacket logging WIP (@tardis-sn)
--  `#425 <https://github.com/tardis-sn/tardis/pull/425>`__ Updated
-   nlte.rst (@souravsingh)
--  `#424 <https://github.com/tardis-sn/tardis/pull/424>`__ added a new
-   requirement for astropy (@wkerzendorf)
--  `#1 <https://github.com/tardis-sn/tardis/pull/1>`__ Update nlte.rst
-   (@souravsingh)
--  `#375 <https://github.com/tardis-sn/tardis/pull/375>`__ made sure
-   that atomic does not reinsert the index into the dataframe
-   (@wkerzendorf)
--  `#420 <https://github.com/tardis-sn/tardis/pull/420>`__ Memory issue
-   (@wkerzendorf)
--  `#416 <https://github.com/tardis-sn/tardis/pull/416>`__ added new
-   version requirements for pandas and astropy (@wkerzendorf)
--  `#414 <https://github.com/tardis-sn/tardis/pull/414>`__ Improvements
-   to He approximation. (@aoifeboyle)
--  `#413 <https://github.com/tardis-sn/tardis/pull/413>`__ WIP
-   Docstrings (@wkerzendorf)
--  `#412 <https://github.com/tardis-sn/tardis/pull/412>`__ Fix for zeta
-   issues. (@wkerzendorf)
--  `#3 <https://github.com/tardis-sn/tardis/pull/3>`__ Plasma/ab zeta
-   fix (@wkerzendorf)
--  `#410 <https://github.com/tardis-sn/tardis/pull/410>`__ WIP: Cleaning
-   up plasma (@wkerzendorf)
--  `#399 <https://github.com/tardis-sn/tardis/pull/399>`__ Plasma
-   optimization (@wkerzendorf, @mreineck)
--  `#2 <https://github.com/tardis-sn/tardis/pull/2>`__ fix for chi\_0
-   problem (@wkerzendorf)
--  `#19 <https://github.com/tardis-sn/tardis/pull/19>`__ Plasma
-   optimisation fix. (@aoifeboyle)
--  `#404 <https://github.com/tardis-sn/tardis/pull/404>`__
-   Montecarlo/new packet source (@wkerzendorf)
--  `#407 <https://github.com/tardis-sn/tardis/pull/407>`__ Organising of
-   plasma base files. (@aoifeboyle)
--  `#405 <https://github.com/tardis-sn/tardis/pull/405>`__ Pandas
-   macroatom issue fix (@wkerzendorf)
--  `#406 <https://github.com/tardis-sn/tardis/pull/406>`__ Numerical He
-   NLTE. (@aoifeboyle)
--  `#401 <https://github.com/tardis-sn/tardis/pull/401>`__ Alternative
-   fix for issue #393 (@mreineck)
--  `#398 <https://github.com/tardis-sn/tardis/pull/398>`__ More cleanups
-   (@mreineck)
--  `#400 <https://github.com/tardis-sn/tardis/pull/400>`__ Change to
-   NLTE properties (@aoifeboyle)
--  `#397 <https://github.com/tardis-sn/tardis/pull/397>`__
-   Montecarlo/memoryview (@wkerzendorf)
--  `#396 <https://github.com/tardis-sn/tardis/pull/396>`__ added
-   virt\_packet properties to to\_hdf5 list (Kromer plot) (@unoebauer)
--  `#391 <https://github.com/tardis-sn/tardis/pull/391>`__ More work on
-   cmontecarlo.c and the unit tests (@mreineck)
--  `#364 <https://github.com/tardis-sn/tardis/pull/364>`__ added tardis
-   stats (@wkerzendorf)
--  `#392 <https://github.com/tardis-sn/tardis/pull/392>`__ Consistency
-   between old virtual packet arrays and new ones introduced in PR 384
-   (@unoebauer)
--  `#389 <https://github.com/tardis-sn/tardis/pull/389>`__ changes to
-   address issue #388 (@mreineck)
--  `#386 <https://github.com/tardis-sn/tardis/pull/386>`__ improve
-   inlining specifications and fix a few problems (@mreineck)
--  `#384 <https://github.com/tardis-sn/tardis/pull/384>`__ Minor changes
-   in Monte Carlo and model part for Kromer plots (@unoebauer)
--  `#374 <https://github.com/tardis-sn/tardis/pull/374>`__ WIP: Helium
-   approx. (@wkerzendorf)
--  `#382 <https://github.com/tardis-sn/tardis/pull/382>`__ Improvements
-   to plasma graph (@aoifeboyle)
--  `#381 <https://github.com/tardis-sn/tardis/pull/381>`__ Fix to plasma
-   issue with GUI. (@aoifeboyle)
--  `#379 <https://github.com/tardis-sn/tardis/pull/379>`__ Fix of
-   to\_hdf5. (@aoifeboyle)
--  `#377 <https://github.com/tardis-sn/tardis/pull/377>`__ Plasma static
-   methods (@aoifeboyle)
--  `#373 <https://github.com/tardis-sn/tardis/pull/373>`__ Removing
-   test\_plasma\_nlte.py. (@aoifeboyle)
--  `#372 <https://github.com/tardis-sn/tardis/pull/372>`__ Correcting
-   some old plasma tests. (@aoifeboyle)
--  `#304 <https://github.com/tardis-sn/tardis/pull/304>`__ Plasma
-   restructure (@wkerzendorf)
--  `#370 <https://github.com/tardis-sn/tardis/pull/370>`__ Removed some
-   tests temporarily. (@aoifeboyle)
--  `#369 <https://github.com/tardis-sn/tardis/pull/369>`__ Removed
-   import plasma\_array (@aoifeboyle)
--  `#368 <https://github.com/tardis-sn/tardis/pull/368>`__ Fixing plasma
-   merge (@aoifeboyle)
--  `#367 <https://github.com/tardis-sn/tardis/pull/367>`__ preparing for
-   the new container archictecture used by travis (@wkerzendorf)
--  `#365 <https://github.com/tardis-sn/tardis/pull/365>`__ LTE Plasma
-   Test (@aoifeboyle)
--  `#361 <https://github.com/tardis-sn/tardis/pull/361>`__ Added
-   formulae to graph. (@aoifeboyle)
--  `#360 <https://github.com/tardis-sn/tardis/pull/360>`__
-   Rebasedvirtrunner (@orbitfold, @wkerzendorf)
--  `#362 <https://github.com/tardis-sn/tardis/pull/362>`__ Adjusted
-   stimulated emission factor for NLTE. (@aoifeboyle)
--  `#355 <https://github.com/tardis-sn/tardis/pull/355>`__ Add
-   with-openmp to develop (@orbitfold)
--  `#354 <https://github.com/tardis-sn/tardis/pull/354>`__ added print
-   statement for openmp (@wkerzendorf)
--  `#350 <https://github.com/tardis-sn/tardis/pull/350>`__
-   Tidying/Testing/Documenting Plasma (@aoifeboyle)
--  `#352 <https://github.com/tardis-sn/tardis/pull/352>`__ Attempt at
-   solution. (@aoifeboyle)
--  `#330 <https://github.com/tardis-sn/tardis/pull/330>`__ [GSoC 2015
-   WIP] Testing other montecarlo functions (@kaushik94)
--  `#347 <https://github.com/tardis-sn/tardis/pull/347>`__ NLTE
-   (@aoifeboyle)
--  `#325 <https://github.com/tardis-sn/tardis/pull/325>`__ Bound-free
-   interactions (@chvogl)
--  `#344 <https://github.com/tardis-sn/tardis/pull/344>`__
-   Plasma/multiple outputs (@aoifeboyle)
--  `#346 <https://github.com/tardis-sn/tardis/pull/346>`__ linked the
-   plasma documentation again (@wkerzendorf)
--  `#338 <https://github.com/tardis-sn/tardis/pull/338>`__ OpenMP WIP
-   (@orbitfold)
--  `#343 <https://github.com/tardis-sn/tardis/pull/343>`__ Plasma/multi
-   output (@wkerzendorf)
--  `#17 <https://github.com/tardis-sn/tardis/pull/17>`__ Fixes.
-   (@aoifeboyle)
--  `#324 <https://github.com/tardis-sn/tardis/pull/324>`__ Gui package
-   (WIP) (@gautam1168)
--  `#327 <https://github.com/tardis-sn/tardis/pull/327>`__ [GSoC 2015
-   MRG] Testing getters setters (@kaushik94)
--  `#322 <https://github.com/tardis-sn/tardis/pull/322>`__ Updating the
-   gui documentation. (@gautam1168)
--  `#296 <https://github.com/tardis-sn/tardis/pull/296>`__ Gui with
-   menubars(WIP) (@gautam1168)
--  `#320 <https://github.com/tardis-sn/tardis/pull/320>`__ virtual
-   packets frequency cut (@unoebauer)
--  `#314 <https://github.com/tardis-sn/tardis/pull/314>`__ Installation
-   FAQ (@wkerzendorf)
--  `#310 <https://github.com/tardis-sn/tardis/pull/310>`__ A more
-   detailed description of the montecarlo process (@wkerzendorf)
--  `#301 <https://github.com/tardis-sn/tardis/pull/301>`__ [GSoC 2015
-   MRG] Restructuring Montecarlo (@kaushik94)
--  `#234 <https://github.com/tardis-sn/tardis/pull/234>`__ Removing
-   usage of yield in test\_utils.py (@kaushik94)
--  `#299 <https://github.com/tardis-sn/tardis/pull/299>`__ Test of
-   model\_reader.py (@wkerzendorf, @ssim)
--  `#288 <https://github.com/tardis-sn/tardis/pull/288>`__ -fixed
-   discrepancy concerning hold\_iterations (@unoebauer)
--  `#286 <https://github.com/tardis-sn/tardis/pull/286>`__ Proposal for
-   a new to HD5 function. (@mklauser)
--  `#283 <https://github.com/tardis-sn/tardis/pull/283>`__ fixed the
-   reader for the older Paper1 format yaml files (@wkerzendorf)
--  `#269 <https://github.com/tardis-sn/tardis/pull/269>`__ Miscellaneous
-   README changes (@iKevinY)
--  `#251 <https://github.com/tardis-sn/tardis/pull/251>`__ gui.py and
-   running.rst edited for PyQt4 and PySide (@gautam1168)
--  `#250 <https://github.com/tardis-sn/tardis/pull/250>`__ Docs/pip reqs
-   (@wkerzendorf)
--  `#244 <https://github.com/tardis-sn/tardis/pull/244>`__ added
-   coverage back (@wkerzendorf)
--  `#240 <https://github.com/tardis-sn/tardis/pull/240>`__ rename of
-   pip-requirements to conda-requirements (@wkerzendorf)
--  `#225 <https://github.com/tardis-sn/tardis/pull/225>`__ Test added in
-   test\_atomic.py (@vaibhav4595)
--  `#223 <https://github.com/tardis-sn/tardis/pull/223>`__ Update
-   git\_workflow.rst (@ujjwalwahi)
-
-1.0rc3 (2015/03/03 12:54 +00:00)
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
--  `#219 <https://github.com/tardis-sn/tardis/pull/219>`__ fixing
-   run\_tardis (@wkerzendorf)
-
-1.0.dev1419 (2015/02/19 13:58 +00:00)
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
--  `#218 <https://github.com/tardis-sn/tardis/pull/218>`__ Docs/anaconda
-   install (@wkerzendorf)
--  `#217 <https://github.com/tardis-sn/tardis/pull/217>`__ Docs/fixing
-   pip requirements (@wkerzendorf)
--  `#216 <https://github.com/tardis-sn/tardis/pull/216>`__ some fixes to
-   the gui so it works with pyside (@wkerzendorf)
--  `#214 <https://github.com/tardis-sn/tardis/pull/214>`__ Preparing the
-   docs for V1 (@wkerzendorf)
--  `#210 <https://github.com/tardis-sn/tardis/pull/210>`__ a restructure
-   of the C-file file structure (@wkerzendorf, @mklauser)
--  `#7 <https://github.com/tardis-sn/tardis/pull/7>`__ include .c in
-   montecarlo/src/ for the randomkit files (@mklauser)
--  `#209 <https://github.com/tardis-sn/tardis/pull/209>`__
-   Testing/pandas version info (@wkerzendorf)
--  `#205 <https://github.com/tardis-sn/tardis/pull/205>`__ As simpler
-   ``run_tardis`` (@wkerzendorf)
--  `#206 <https://github.com/tardis-sn/tardis/pull/206>`__ Minor but
-   critical fix to binary search (reverse) (@ssim)
--  `#199 <https://github.com/tardis-sn/tardis/pull/199>`__ Gnuify
-   cmontecarlo.c and cmontecarlo.h files (@orbitfold)
--  `#203 <https://github.com/tardis-sn/tardis/pull/203>`__
-   Docs/reporting bugs (@wkerzendorf)
--  `#201 <https://github.com/tardis-sn/tardis/pull/201>`__ A critical
-   warning was added to the model indicating that no packet has left the
-   simulation through the outer boundary. (@mklauser)
--  `#200 <https://github.com/tardis-sn/tardis/pull/200>`__ added a new
-   location for the atomic data. (@wkerzendorf)
--  `#196 <https://github.com/tardis-sn/tardis/pull/196>`__ New binary
-   search added (@mklauser)
--  `#169 <https://github.com/tardis-sn/tardis/pull/169>`__ fix for #168
-   (@mklauser)
--  `#194 <https://github.com/tardis-sn/tardis/pull/194>`__ Setup/fix
-   requirements (@wkerzendorf)
--  `#188 <https://github.com/tardis-sn/tardis/pull/188>`__ A macro to
-   automagically fix inline issues (@orbitfold)
--  `#190 <https://github.com/tardis-sn/tardis/pull/190>`__
-   General/fixing unit problems (@wkerzendorf)
--  `#183 <https://github.com/tardis-sn/tardis/pull/183>`__ Added colon
-   (@sofiatti)
--  `#179 <https://github.com/tardis-sn/tardis/pull/179>`__ making sure
-   that if last\_no\_of\_packets is not specified that it is set t...
-   (@wkerzendorf)
--  `#178 <https://github.com/tardis-sn/tardis/pull/178>`__ Atomic/fix
-   reprepare (@wkerzendorf)
--  `#177 <https://github.com/tardis-sn/tardis/pull/177>`__ added
-   from\_yaml and from\_config\_dict to ConfigurationNameSpace
-   (@wkerzendorf)
--  `#175 <https://github.com/tardis-sn/tardis/pull/175>`__ Fix a few
-   problems in cmontecarlo.c (@orbitfold, @wkerzendorf)
--  `#174 <https://github.com/tardis-sn/tardis/pull/174>`__ fixes added
-   for clang compile on mac (@wkerzendorf)
--  `#171 <https://github.com/tardis-sn/tardis/pull/171>`__ Fix issues
-   when using clang compiler (issue #170) (@orbitfold)
--  `#167 <https://github.com/tardis-sn/tardis/pull/167>`__ fix for #165
-   (@mklauser, @wkerzendorf)
--  `#3 <https://github.com/tardis-sn/tardis/pull/3>`__ testing the new
-   t\_inner fix (@wkerzendorf)
--  `#164 <https://github.com/tardis-sn/tardis/pull/164>`__ Config/toggle
-   validation (@wkerzendorf)
--  `#151 <https://github.com/tardis-sn/tardis/pull/151>`__ WIP
-   Montecarlo C Rewrite (@orbitfold)
--  `#160 <https://github.com/tardis-sn/tardis/pull/160>`__ how to get
-   constant density? broken? (@wkerzendorf)
-
-0.9.2 (2014/06/12 23:37 +00:00)
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
--  `#158 <https://github.com/tardis-sn/tardis/pull/158>`__ updated
-   astropy\_helpers version (@wkerzendorf)
--  `#157 <https://github.com/tardis-sn/tardis/pull/157>`__ added yaml to
-   pip-requirements and linked the doc pip-requirements to this
-   (@wkerzendorf)
--  `#154 <https://github.com/tardis-sn/tardis/pull/154>`__ renamed
-   Config to ConfigurationValidator (@wkerzendorf)
--  `#153 <https://github.com/tardis-sn/tardis/pull/153>`__ General mixup
-   of 0.9.2b1 (@wkerzendorf)
--  `#152 <https://github.com/tardis-sn/tardis/pull/152>`__ importing
-   problems with new C functions? (@wkerzendorf)
--  `#149 <https://github.com/tardis-sn/tardis/pull/149>`__ Edits to docs
-   (@ssim)
--  `#150 <https://github.com/tardis-sn/tardis/pull/150>`__ Montecarlo
-   flowchart (@orbitfold)
--  `#148 <https://github.com/tardis-sn/tardis/pull/148>`__ fixed
-   config\_validator log\_lsun check (@wkerzendorf)
--  `#142 <https://github.com/tardis-sn/tardis/pull/142>`__ WIP Porting
-   utility functions to C (issue #131) (@orbitfold)
--  `#137 <https://github.com/tardis-sn/tardis/pull/137>`__ TRAVIS
-   passes. (@wkerzendorf)
--  `#143 <https://github.com/tardis-sn/tardis/pull/143>`__ Updating
-   configuration name space (@wkerzendorf)
--  `#136 <https://github.com/tardis-sn/tardis/pull/136>`__ Updating the
-   config reader to work with the validator (@wkerzendorf, @mklauser)
--  `#145 <https://github.com/tardis-sn/tardis/pull/145>`__ Adding full
-   spectrum generation test to TRAVIS (@wkerzendorf)
--  `#144 <https://github.com/tardis-sn/tardis/pull/144>`__ Setup/switch
-   to astropy helpers (@wkerzendorf)
--  `#6 <https://github.com/tardis-sn/tardis/pull/6>`__ Pr136 (@mklauser)
--  `#5 <https://github.com/tardis-sn/tardis/pull/5>`__ Pr136 (@mklauser)
--  `#4 <https://github.com/tardis-sn/tardis/pull/4>`__ Pr136 (@mklauser)
--  `#3 <https://github.com/tardis-sn/tardis/pull/3>`__ Pr136 (@mklauser)
--  `#2 <https://github.com/tardis-sn/tardis/pull/2>`__ bug fix for the
-   container handling. ToDo Remove remove general except in...
-   (@mklauser)
--  `#135 <https://github.com/tardis-sn/tardis/pull/135>`__ Adding
-   documentation for d\_inner and d\_outer calculation (@wkerzendorf)
--  `#132 <https://github.com/tardis-sn/tardis/pull/132>`__ i try to
-   rebase the dp to the master (@mklauser)
--  `#134 <https://github.com/tardis-sn/tardis/pull/134>`__ Test high
-   temperature - outside of interpolation range of zeta factor
-   (@wkerzendorf)
--  `#129 <https://github.com/tardis-sn/tardis/pull/129>`__ Re-implement
-   binary\_search in C (@orbitfold)
--  `#127 <https://github.com/tardis-sn/tardis/pull/127>`__ Docs edit
-   only ("accessing physical quantities") (@ssim)
--  `#116 <https://github.com/tardis-sn/tardis/pull/116>`__ Adding
-   documentation for Workflow (@wkerzendorf, @ssim)
--  `#112 <https://github.com/tardis-sn/tardis/pull/112>`__ NLTE fixes -
-   discussion needed before merge - relates to #109 (@ssim,
-   @wkerzendorf)
--  `#11 <https://github.com/tardis-sn/tardis/pull/11>`__ fixing up the
-   NLTE tests (@wkerzendorf)
--  `#10 <https://github.com/tardis-sn/tardis/pull/10>`__ Plasma/fix nlte
-   tests (@wkerzendorf)
--  `#122 <https://github.com/tardis-sn/tardis/pull/122>`__ proposed
-   restructing of binary search/line search (@ssim, @wkerzendorf,
-   @mklauser)
--  `#9 <https://github.com/tardis-sn/tardis/pull/9>`__ Issue 123two
-   (@mklauser)
--  `#124 <https://github.com/tardis-sn/tardis/pull/124>`__ updated
-   current\_public\_table.rst (@wkerzendorf)
--  `#7 <https://github.com/tardis-sn/tardis/pull/7>`__ Fix line search
-   (@wkerzendorf)
--  `#6 <https://github.com/tardis-sn/tardis/pull/6>`__ updated
-   documentation to numpydoc standard (@wkerzendorf)
--  `#121 <https://github.com/tardis-sn/tardis/pull/121>`__ warning added
-   for density file readin outside tabulated range (@ssim)
--  `#119 <https://github.com/tardis-sn/tardis/pull/119>`__ Fix to deal
-   with possible problem in end of line list (@ssim)
--  `#118 <https://github.com/tardis-sn/tardis/pull/118>`__ Fix for the
-   issue #84 Pull request for fixes / documentation edits related to the
-   profiles (@ssim, @mklauser)
--  `#91 <https://github.com/tardis-sn/tardis/pull/91>`__ Documentation
-   update to download atomic databases (@wkerzendorf)
--  `#110 <https://github.com/tardis-sn/tardis/pull/110>`__ #106
-   suggestion for private variable names (@mklauser, @ssim)
--  `#111 <https://github.com/tardis-sn/tardis/pull/111>`__ minor fixed /
-   logger statements (@ssim)
--  `#97 <https://github.com/tardis-sn/tardis/pull/97>`__ Fix for issue
-   #81: Add warning if w > 1. (@thegyro)
--  `#92 <https://github.com/tardis-sn/tardis/pull/92>`__ Adding a simple
-   test to run a full calculation (@wkerzendorf)
--  `#101 <https://github.com/tardis-sn/tardis/pull/101>`__ Fix for Issue
-   #88: Moved test functions for tardis.util from test\_config\_reader
-   (@thegyro)
--  `#94 <https://github.com/tardis-sn/tardis/pull/94>`__ Fix coveralls
-   (@wkerzendorf)
--  `#87 <https://github.com/tardis-sn/tardis/pull/87>`__ Added --profile
-   and --profiler\_log\_file command line arguments to enable...
-   (@orbitfold)
-
-0.9.1 (2014/02/04 01:51 +00:00)
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
--  `#74 <https://github.com/tardis-sn/tardis/pull/74>`__ fixed manifest
-   to incluse ez\_setup.py and setuptools\_bootstrap.py. fixes...
-   (@wkerzendorf)
--  `#78 <https://github.com/tardis-sn/tardis/pull/78>`__ cosmetic fixes
-   (@ssim)
--  `#77 <https://github.com/tardis-sn/tardis/pull/77>`__ Docs edit
-   (@ssim, @wkerzendorf)
--  `#1 <https://github.com/tardis-sn/tardis/pull/1>`__ Docs fix
-   (@wkerzendorf, @ssim)
--  `#76 <https://github.com/tardis-sn/tardis/pull/76>`__ stuff with
-   abundance profile readin (@ssim)
--  `#75 <https://github.com/tardis-sn/tardis/pull/75>`__ work on gui
-   fixing (@ssim)
--  `#72 <https://github.com/tardis-sn/tardis/pull/72>`__ documentation
-   update for release (@wkerzendorf)
--  `#71 <https://github.com/tardis-sn/tardis/pull/71>`__ New
-   configuration style (@wkerzendorf)
--  `#70 <https://github.com/tardis-sn/tardis/pull/70>`__ added simple
-   coveralls.io in there (@wkerzendorf)
--  `#69 <https://github.com/tardis-sn/tardis/pull/69>`__ Atomic/atomic
-   symbols (@wkerzendorf)
--  `#67 <https://github.com/tardis-sn/tardis/pull/67>`__ Config/ascii
-   file reader (@wkerzendorf)
--  `#68 <https://github.com/tardis-sn/tardis/pull/68>`__ Tests/fixing2
-   (@wkerzendorf)
--  `#61 <https://github.com/tardis-sn/tardis/pull/61>`__ gui fix (@ssim)
--  `#60 <https://github.com/tardis-sn/tardis/pull/60>`__ General
-   bugfixing (@wkerzendorf)
--  `#59 <https://github.com/tardis-sn/tardis/pull/59>`__ General
-   bugfixing (@wkerzendorf, @nathanielatom, @ssim, @maryampatel)
--  `#54 <https://github.com/tardis-sn/tardis/pull/54>`__
-   Montecarlo/reflection (@ssim)
--  `#52 <https://github.com/tardis-sn/tardis/pull/52>`__
-   Montecarlo/reflection (@ssim, @wkerzendorf, @maryampatel,
-   @nathanielatom)
--  `#51 <https://github.com/tardis-sn/tardis/pull/51>`__ Model/optimizig
-   (@nathanielatom)
--  `#50 <https://github.com/tardis-sn/tardis/pull/50>`__ Gui/span
-   (@nathanielatom)
--  `#49 <https://github.com/tardis-sn/tardis/pull/49>`__ Gui/span
-   (@nathanielatom)
--  `#48 <https://github.com/tardis-sn/tardis/pull/48>`__ Gui/span
-   (@nathanielatom, @wkerzendorf, @maryampatel)
--  `#39 <https://github.com/tardis-sn/tardis/pull/39>`__ General
-   bugfixing (@wkerzendorf, @nathanielatom, @maryampatel)
--  `#46 <https://github.com/tardis-sn/tardis/pull/46>`__ Gui/dialogue
-   (@nathanielatom, @wkerzendorf)
--  `#41 <https://github.com/tardis-sn/tardis/pull/41>`__ Gui/docs
-   (@nathanielatom)
--  `#40 <https://github.com/tardis-sn/tardis/pull/40>`__ Gui/matplotlib
-   figure (@nathanielatom, @maryampatel)
--  `#34 <https://github.com/tardis-sn/tardis/pull/34>`__ General
-   bugfixing (@wkerzendorf)
--  `#32 <https://github.com/tardis-sn/tardis/pull/32>`__ Plasma/testing2
-   (@maryampatel)
--  `#29 <https://github.com/tardis-sn/tardis/pull/29>`__ General
-   bugfixing looks good to me (@wkerzendorf)
--  `#28 <https://github.com/tardis-sn/tardis/pull/28>`__ The same as
-   last time but with small changes. (@mklauser)
--  `#26 <https://github.com/tardis-sn/tardis/pull/26>`__ Plasma/bound
-   free (@mklauser)
--  `#25 <https://github.com/tardis-sn/tardis/pull/25>`__ Simulation/run
-   single simulation (@wkerzendorf)
-
-v0.9a (2013/02/14 21:15 +00:00)
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
--  `#24 <https://github.com/tardis-sn/tardis/pull/24>`__
-   Montecarlo/extract - seems fine merging (@ssim)
--  `#22 <https://github.com/tardis-sn/tardis/pull/22>`__ Montecarlo/fix
-   convergence (@wkerzendorf, @ssim)
--  `#20 <https://github.com/tardis-sn/tardis/pull/20>`__ Plasma/testing
-   (@maryampatel)
--  `#18 <https://github.com/tardis-sn/tardis/pull/18>`__ Docs/fixdocs
-   (@maryampatel)
--  `#17 <https://github.com/tardis-sn/tardis/pull/17>`__ Docs/fixdocs
-   (@maryampatel)
--  `#16 <https://github.com/tardis-sn/tardis/pull/16>`__ Doc/atomic
-   preliminary merge (@maryampatel)
--  `#14 <https://github.com/tardis-sn/tardis/pull/14>`__ Implemented all
-   changes (@maryampatel)
--  `#13 <https://github.com/tardis-sn/tardis/pull/13>`__ Changed the
-   main documentation page (@maryampatel)