From 1fc7f91fb86510abe1f2a5523c0b98b974e41bbc Mon Sep 17 00:00:00 2001
From: atharva-2001 <aryaa_1@rknec.edu>
Date: Wed, 9 Jun 2021 21:24:03 +0530
Subject: [PATCH] layout changes

---
 .../convergence-plots-plasma-demo.ipynb       |  34 ++--
 .../cplots-luminosity-demo.ipynb              | 171 ++++++++----------
 2 files changed, 93 insertions(+), 112 deletions(-)

diff --git a/docs/using/visualization/convergence-plots-plasma-demo.ipynb b/docs/using/visualization/convergence-plots-plasma-demo.ipynb
index 5a09a36b52c..6711d23502f 100644
--- a/docs/using/visualization/convergence-plots-plasma-demo.ipynb
+++ b/docs/using/visualization/convergence-plots-plasma-demo.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": 36,
+   "execution_count": 28,
    "id": "77d7d646",
    "metadata": {},
    "outputs": [],
@@ -13,7 +13,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 64,
+   "execution_count": 29,
    "id": "0d730ddc",
    "metadata": {},
    "outputs": [],
@@ -29,7 +29,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 65,
+   "execution_count": 30,
    "id": "4061d8e0",
    "metadata": {},
    "outputs": [],
@@ -72,20 +72,20 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 66,
+   "execution_count": 31,
    "id": "252fb2b0",
    "metadata": {},
    "outputs": [
     {
      "data": {
       "application/vnd.jupyter.widget-view+json": {
-       "model_id": "eb62f889961a4d679491b31ce790e584",
+       "model_id": "dcda07a0ba14423c9c9bc37c9c48dedb",
        "version_major": 2,
        "version_minor": 0
       },
       "text/plain": [
        "FigureWidget({\n",
-       "    'data': [{'type': 'scatter', 'uid': '6bec4f83-3988-4410-8801-f715049f92b5', 'xaxis': 'x', '…"
+       "    'data': [{'type': 'scatter', 'uid': 'db2695b5-c6fe-454b-a66f-86d01a739f21', 'xaxis': 'x', '…"
       ]
      },
      "metadata": {},
@@ -98,7 +98,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 67,
+   "execution_count": 32,
    "id": "08befc7a",
    "metadata": {},
    "outputs": [],
@@ -109,7 +109,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 68,
+   "execution_count": 33,
    "id": "b86cd026",
    "metadata": {},
    "outputs": [],
@@ -181,7 +181,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 69,
+   "execution_count": 34,
    "id": "d2b3b1c1",
    "metadata": {},
    "outputs": [
@@ -550,7 +550,7 @@
       " (\u001b[1mwarnings.py\u001b[0m:110)\n",
       "Running post-merge numba montecarlo (with C close lines)!\n",
       "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  Luminosity emitted = 1.26319e+43 erg / s Luminosity absorbed = 4.10706e+42 erg / s Luminosity requested = 1.05928e+43 erg / s (\u001b[1mbase.py\u001b[0m:438)\n",
-      "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  Simulation finished in 20 iterations and took 26.74 s (\u001b[1mbase.py\u001b[0m:381)\n"
+      "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  Simulation finished in 20 iterations and took 24.65 s (\u001b[1mbase.py\u001b[0m:381)\n"
      ]
     }
    ],
@@ -585,15 +585,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
-   "id": "a52a6211",
-   "metadata": {},
-   "outputs": [],
-   "source": []
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 70,
+   "execution_count": 35,
    "id": "004b6d46",
    "metadata": {},
    "outputs": [
@@ -624,9 +616,9 @@
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10371.370420579678, 10256.85257100142, 10163.046966831698, 10074.690533201088], \"yaxis\": \"y\"}, {\"legendgroup\": \"group-19\", \"line\": {\"color\": \"#800000\"}, \"marker\": {\"size\": 3, \"symbol\": \"diamond\"}, \"name\": \"20\", \"type\": \"scatter\", \"uid\": \"edcf4829-e2fe-4d40-b083-522defb34f0b\", \"x\": [11000.0, 11450.0, 11900.0, 12350.0, 12800.0, 13250.0, 13700.0, 14150.0, 14600.0, 15050.0, 15500.0, 15950.0, 16400.0, 16850.0, 17300.0, 17750.0, 18200.0, 18650.0, 19100.0, 19550.0, 20000.0], \"xaxis\": \"x2\", \"y\": [0.44443637159123983, 0.3301963495493953, 0.26475209661040167, 0.21476367292060317, 0.1841100166964522, 0.16259081949317192, 0.143853601724972, 0.12756474449212685, 0.11696925559066805, 0.10710041470268136, 0.09912187964115514, 0.09650204436463768, 0.08985914755672528, 0.08622238465789246, 0.08092359794988353, 0.07737849041147359, 0.07453157832590498, 0.07263537854976868, 0.07025313296079846, 0.06792936424027783], \"yaxis\": \"y2\"}],                        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[{\"marker\": {\"colorbar\": {\"outlinewidth\": 0, \"ticks\": \"\"}}, \"type\": \"scattergeo\"}], \"scattergl\": [{\"marker\": {\"colorbar\": {\"outlinewidth\": 0, \"ticks\": \"\"}}, \"type\": \"scattergl\"}], \"scattermapbox\": [{\"marker\": {\"colorbar\": {\"outlinewidth\": 0, \"ticks\": \"\"}}, \"type\": \"scattermapbox\"}], \"scatterpolar\": [{\"marker\": {\"colorbar\": {\"outlinewidth\": 0, \"ticks\": \"\"}}, \"type\": \"scatterpolar\"}], \"scatterpolargl\": [{\"marker\": {\"colorbar\": {\"outlinewidth\": 0, \"ticks\": \"\"}}, \"type\": \"scatterpolargl\"}], \"scatterternary\": [{\"marker\": {\"colorbar\": {\"outlinewidth\": 0, \"ticks\": \"\"}}, \"type\": \"scatterternary\"}], \"surface\": [{\"colorbar\": {\"outlinewidth\": 0, \"ticks\": \"\"}, \"colorscale\": [[0.0, \"#0d0887\"], [0.1111111111111111, \"#46039f\"], [0.2222222222222222, \"#7201a8\"], [0.3333333333333333, \"#9c179e\"], [0.4444444444444444, \"#bd3786\"], [0.5555555555555556, \"#d8576b\"], [0.6666666666666666, 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{\"angularaxis\": {\"gridcolor\": \"white\", \"linecolor\": \"white\", \"ticks\": \"\"}, \"bgcolor\": \"#E5ECF6\", \"radialaxis\": {\"gridcolor\": \"white\", \"linecolor\": \"white\", \"ticks\": \"\"}}, \"scene\": {\"xaxis\": {\"backgroundcolor\": \"#E5ECF6\", \"gridcolor\": \"white\", \"gridwidth\": 2, \"linecolor\": \"white\", \"showbackground\": true, \"ticks\": \"\", \"zerolinecolor\": \"white\"}, \"yaxis\": {\"backgroundcolor\": \"#E5ECF6\", \"gridcolor\": \"white\", \"gridwidth\": 2, \"linecolor\": \"white\", \"showbackground\": true, \"ticks\": \"\", \"zerolinecolor\": \"white\"}, \"zaxis\": {\"backgroundcolor\": \"#E5ECF6\", \"gridcolor\": \"white\", \"gridwidth\": 2, \"linecolor\": \"white\", \"showbackground\": true, \"ticks\": \"\", \"zerolinecolor\": \"white\"}}, \"shapedefaults\": {\"line\": {\"color\": \"#2a3f5f\"}}, \"ternary\": {\"aaxis\": {\"gridcolor\": \"white\", \"linecolor\": \"white\", \"ticks\": \"\"}, \"baxis\": {\"gridcolor\": \"white\", \"linecolor\": \"white\", \"ticks\": \"\"}, \"bgcolor\": \"#E5ECF6\", \"caxis\": {\"gridcolor\": \"white\", \"linecolor\": \"white\", \"ticks\": \"\"}}, \"title\": {\"x\": 0.05}, \"xaxis\": {\"automargin\": true, \"gridcolor\": \"white\", \"linecolor\": \"white\", \"ticks\": \"\", \"title\": {\"standoff\": 15}, \"zerolinecolor\": \"white\", \"zerolinewidth\": 2}, \"yaxis\": {\"automargin\": true, \"gridcolor\": \"white\", \"linecolor\": \"white\", \"ticks\": \"\", \"title\": {\"standoff\": 15}, \"zerolinecolor\": \"white\", \"zerolinewidth\": 2}}}, \"xaxis\": {\"anchor\": \"y\", \"domain\": [0.0, 0.45], \"exponentformat\": \"e\", \"showexponent\": \"all\", \"title\": {\"text\": \"$Shell~~Velocity$\"}}, \"xaxis2\": {\"anchor\": \"y2\", \"domain\": [0.55, 1.0], \"exponentformat\": \"e\", \"matches\": \"x\", \"showexponent\": \"all\", \"title\": {\"text\": \"$Shell~~Velocity$\"}}, \"yaxis\": {\"anchor\": \"x\", \"domain\": [0.0, 1.0], \"range\": [9000, 14000], \"tickformat\": \"g\", \"title\": {\"text\": \"$T_{rad}\\\\ [K]$\"}}, \"yaxis2\": {\"anchor\": \"x2\", \"domain\": [0.0, 1.0], \"title\": {\"text\": \"$W$\"}}},                        {\"responsive\": true}                    ).then(function(){\n",
        "                            \n",
-       "var gd = document.getElementById('6b7fd4d8-ef0e-4019-867c-e02cb8aec2ed');\n",
+       "var gd = document.getElementById('17c418c0-4711-468f-89ee-eaebfbf4d541');\n",
        "var x = new MutationObserver(function (mutations, observer) {{\n",
        "        var display = window.getComputedStyle(gd).display;\n",
        "        if (!display || display === 'none') {{\n",
diff --git a/docs/using/visualization/cplots-luminosity-demo.ipynb b/docs/using/visualization/cplots-luminosity-demo.ipynb
index f15baf72b2f..113ddddd2f5 100644
--- a/docs/using/visualization/cplots-luminosity-demo.ipynb
+++ b/docs/using/visualization/cplots-luminosity-demo.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": 376,
    "id": "a53728b6",
    "metadata": {},
    "outputs": [],
@@ -15,86 +15,98 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
-   "id": "74030124",
+   "execution_count": 377,
+   "id": "9f61e653",
    "metadata": {},
    "outputs": [],
    "source": [
     "colors = [\"#FF0000\",\"#00FF00\",\"#0000FF\",\"#081d58\"]\n",
-    "luminosities = [\"emitted\", \"absorbed\", \"requested\"]\n",
+    "luminosities = [\"Emitted\", \"Absorbed\", \"Requested\"]\n",
     "X = list(range(1,21))\n",
     "\n",
     "\n",
     "fig = go.FigureWidget().set_subplots(\n",
     "        2,1, \n",
     "        shared_xaxes=True, \n",
-    "        y_title=r\"$Luminosity~[\\dfrac{erg}{sec}]$\",\n",
-    "        x_title = r\"$Iteration~Number$\", \n",
-    "        row_heights=[0.3, 0.7]\n",
+    "        vertical_spacing = 0.06,\n",
+    "        row_heights=[0.8, 0.2]\n",
     "    )\n",
     "\n",
     "for luminosity, color in zip(luminosities, colors[:-1]):\n",
-    "    fig.add_bar(\n",
-    "        name = luminosity,\n",
-    "        row = 1, \n",
-    "        col = 1, \n",
-    "        orientation='v', \n",
-    "        legendgroup = luminosity, \n",
-    "        marker_color = color\n",
-    "    )\n",
-    "    \n",
     "    fig.add_scatter(\n",
     "        name = luminosity, \n",
     "        mode = \"lines\", \n",
-    "        line_color = color, \n",
-    "        row = 2, \n",
+    "#         line_color = color, \n",
+    "        row = 1, \n",
     "        col = 1, \n",
     "        legendgroup = luminosity, \n",
-    "        showlegend = False,\n",
+    "#         showlegend = False,\n",
     "    )\n",
-    "   \n",
+    "fig.add_bar(\n",
+    "    name = \"Percentage change<br>between emitted<br>and requested<br>luminosities\",\n",
+    "    row = 2, \n",
+    "    col = 1, \n",
+    "    orientation='v', \n",
+    "    width = 0.5,\n",
+    "    hoverinfo=\"text\",\n",
+    "    marker_color='rgb(158,202,225)', \n",
+    "    marker_line_color='rgb(8,48,107)',\n",
+    "    marker_line_width=1.5, opacity=0.6\n",
+    "\n",
+    ")\n",
+    "\n",
+    "\n",
     "fig = fig.update_layout(\n",
     "    xaxis = dict(\n",
-    "        matches = \"x2\",\n",
+    "        range = [0, 21],\n",
+    "        dtick = 2,\n",
+    "        \n",
     "    ),\n",
     "    xaxis2 = dict(\n",
-    "        range = [0, 21],\n",
-    "        dtick = 2\n",
+    "        matches = \"x\",\n",
+    "        title = r\"$\\mbox{Iteration Number}$\", \n",
     "    ),\n",
-    "    yaxis2 = dict(\n",
+    "    \n",
+    "    yaxis = dict(\n",
+    "        title = r\"$\\mbox{Luminosity}~(erg~sec^{-1})$\",\n",
     "        automargin = True,\n",
     "        side = \"top\",\n",
-    "        exponentformat = \"e\"\n",
+    "        exponentformat = \"e\",\n",
+    "#         range = [0.2e43, 1.3e43],\n",
+    "#         tickangle = -45,\n",
     "    ),\n",
-    "    yaxis = dict(\n",
-    "        exponentformat = \"e\"\n",
+    "    yaxis2 = dict(\n",
+    "        exponentformat = \"e\",\n",
+    "        automargin = True\n",
     "    ),\n",
     "    legend_tracegroupgap = 0,\n",
-    "    legend_title_text = \"iterations\",\n",
     "    hidesources = True,\n",
     "    height = 600,\n",
     "    hoverlabel_align = 'right',\n",
-    ")\n"
+    "    legend_title_text = \"Luminosity\",\n",
+    ")\n",
+    "\n",
+    "   "
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": 378,
    "id": "9fa5101d",
    "metadata": {},
    "outputs": [
     {
      "data": {
       "application/vnd.jupyter.widget-view+json": {
-       "model_id": "cdb051d0f5db4f808fff6df59901fdd2",
+       "model_id": "c890708cd40f45399be22f67ef1b5282",
        "version_major": 2,
        "version_minor": 0
       },
       "text/plain": [
        "FigureWidget({\n",
-       "    'data': [{'legendgroup': 'emitted',\n",
-       "              'marker': {'color': '#FF0000'},\n",
-       "         …"
+       "    'data': [{'legendgroup': 'Emitted',\n",
+       "              'mode': 'lines',\n",
+       "              'name': 'E…"
       ]
      },
      "metadata": {},
@@ -107,18 +119,18 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": 379,
    "id": "9aa4804d",
    "metadata": {},
    "outputs": [],
    "source": [
     "traces = defaultdict(list)\n",
-    "luminosities = [item for item in luminosities for i in range(2)]"
+    "# luminosities = [item for item in luminosities for i in range(2)]"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": 380,
    "id": "5d8451e7",
    "metadata": {},
    "outputs": [],
@@ -134,25 +146,33 @@
     "        sim.luminosity_nu_start, sim.luminosity_nu_end\n",
     "    )\n",
     "\n",
-    "    traces[\"emitted\"].append(emitted_luminosity.value)\n",
-    "    traces[\"absorbed\"].append(reabsorbed_luminosity.value)\n",
-    "    traces[\"requested\"].append(sim.luminosity_requested.value)\n",
+    "    traces[\"Emitted\"].append(emitted_luminosity.value)\n",
+    "    traces[\"Absorbed\"].append(reabsorbed_luminosity.value)\n",
+    "    traces[\"Requested\"].append(sim.luminosity_requested.value)\n",
     "    \n",
     "\n",
     "    with fig.batch_update():\n",
     "        # TODO: fix this code\n",
-    "        for index, luminosity in zip(range(6), luminosities):\n",
+    "        for index, luminosity in zip(range(3), luminosities):\n",
     "            fig.data[index].x = X\n",
     "            fig.data[index].y = traces[luminosity]\n",
     "            fig.data[index].hovertemplate = '<i>Y</i>: %{y}'+'<br><b>X</b>: %{x}<br>'\n",
-    "            fig.update_layout(barmode='stack')"
+    "        \n",
+    "        y = [((emitted-requested)*100)/requested for emitted, requested in zip(traces[\"Emitted\"],traces[\"Requested\"])]\n",
+    "        fig.data[-1].x = X\n",
+    "        fig.data[-1].y = y\n",
+    "        fig.data[-1].hovertext = [str(round(item, 2))+\"%\" for item in y]\n",
+    "        fig.update_layout(barmode='stack')\n",
+    "        \n"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": 381,
    "id": "5ac9615e",
-   "metadata": {},
+   "metadata": {
+    "scrolled": true
+   },
    "outputs": [
     {
      "name": "stdout",
@@ -163,11 +183,6 @@
       "[\u001b[1mtardis.io.atom_data.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  Read Atom Data with UUID=6f7b09e887a311e7a06b246e96350010 and MD5=864f1753714343c41f99cb065710cace. (\u001b[1mbase.py\u001b[0m:179)\n",
       "[\u001b[1mtardis.io.atom_data.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  Non provided atomic data: synpp_refs, photoionization_data, yg_data, two_photon_data (\u001b[1mbase.py\u001b[0m:183)\n",
       "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  Starting iteration 1/20 (\u001b[1mbase.py\u001b[0m:323)\n",
-      "[\u001b[1mpy.warnings         \u001b[0m][\u001b[1;33mWARNING\u001b[0m]  /home/atharva/miniconda3/envs/tardis/lib/python3.7/site-packages/astropy/units/equivalencies.py:124: RuntimeWarning:\n",
-      "\n",
-      "divide by zero encountered in double_scalars\n",
-      "\n",
-      " (\u001b[1mwarnings.py\u001b[0m:110)\n",
       "Running post-merge numba montecarlo (with C close lines)!\n",
       "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  Luminosity emitted = 7.94275e+42 erg / s Luminosity absorbed = 2.65805e+42 erg / s Luminosity requested = 1.05928e+43 erg / s (\u001b[1mbase.py\u001b[0m:438)\n",
       "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  Plasma stratification:\n",
@@ -277,13 +292,7 @@
       "\n",
       " (\u001b[1mwarnings.py\u001b[0m:110)\n",
       "Running post-merge numba montecarlo (with C close lines)!\n",
-      "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  Luminosity emitted = 8.39001e+42 erg / s Luminosity absorbed = 2.69230e+42 erg / s Luminosity requested = 1.05928e+43 erg / s (\u001b[1mbase.py\u001b[0m:438)\n"
-     ]
-    },
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
+      "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  Luminosity emitted = 8.39001e+42 erg / s Luminosity absorbed = 2.69230e+42 erg / s Luminosity requested = 1.05928e+43 erg / s (\u001b[1mbase.py\u001b[0m:438)\n",
       "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  Plasma stratification:\n",
       "\t              t_rad    next_t_rad         w    next_w\n",
       "\tShell                                                \n",
@@ -292,7 +301,13 @@
       "\t10     11425.955010  10809.397890  0.125249  0.097256\n",
       "\t15     11082.155938  10454.841299  0.094028  0.073809\n",
       "\n",
-      " (\u001b[1mbase.py\u001b[0m:433)\n",
+      " (\u001b[1mbase.py\u001b[0m:433)\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
       "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  t_inner 10044.200 K -- next t_inner 11285.966 K (\u001b[1mbase.py\u001b[0m:434)\n",
       "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  Starting iteration 8/20 (\u001b[1mbase.py\u001b[0m:323)\n",
       "[\u001b[1mpy.warnings         \u001b[0m][\u001b[1;33mWARNING\u001b[0m]  /home/atharva/miniconda3/envs/tardis/lib/python3.7/site-packages/astropy/units/equivalencies.py:124: RuntimeWarning:\n",
@@ -418,14 +433,14 @@
       "\t10     10825.792025  11378.137918  0.100780  0.120954\n",
       "\t15     10402.120228  10957.211814  0.077634  0.092896\n",
       "\n",
-      " (\u001b[1mbase.py\u001b[0m:433)\n"
+      " (\u001b[1mbase.py\u001b[0m:433)\n",
+      "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  t_inner 11175.750 K -- next t_inner 10152.603 K (\u001b[1mbase.py\u001b[0m:434)\n"
      ]
     },
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  t_inner 11175.750 K -- next t_inner 10152.603 K (\u001b[1mbase.py\u001b[0m:434)\n",
       "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  Starting iteration 15/20 (\u001b[1mbase.py\u001b[0m:323)\n",
       "[\u001b[1mpy.warnings         \u001b[0m][\u001b[1;33mWARNING\u001b[0m]  /home/atharva/miniconda3/envs/tardis/lib/python3.7/site-packages/astropy/units/equivalencies.py:124: RuntimeWarning:\n",
       "\n",
@@ -524,7 +539,7 @@
       " (\u001b[1mwarnings.py\u001b[0m:110)\n",
       "Running post-merge numba montecarlo (with C close lines)!\n",
       "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  Luminosity emitted = 1.26319e+43 erg / s Luminosity absorbed = 4.10706e+42 erg / s Luminosity requested = 1.05928e+43 erg / s (\u001b[1mbase.py\u001b[0m:438)\n",
-      "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  Simulation finished in 20 iterations and took 28.43 s (\u001b[1mbase.py\u001b[0m:381)\n"
+      "[\u001b[1mtardis.simulation.base\u001b[0m][\u001b[1;37mINFO\u001b[0m   ]  Simulation finished in 20 iterations and took 20.63 s (\u001b[1mbase.py\u001b[0m:381)\n"
      ]
     }
    ],
@@ -533,36 +548,10 @@
     "                 simulation_callbacks=[[update_traces]])"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": 7,
-   "id": "30df1b6b",
-   "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/latex": [
-       "$1.2631944 \\times 10^{43} \\; \\mathrm{\\frac{erg}{s}}$"
-      ],
-      "text/plain": [
-       "<Quantity 1.26319439e+43 erg / s>"
-      ]
-     },
-     "execution_count": 7,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
-   "source": [
-    "sim.runner.calculate_emitted_luminosity(\n",
-    "        sim.luminosity_nu_start, sim.luminosity_nu_end\n",
-    ")"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "d5c37aa1",
+   "id": "7565576b",
    "metadata": {},
    "outputs": [],
    "source": []
@@ -570,14 +559,14 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "e63b3f19",
+   "id": "2ed6d580",
    "metadata": {},
    "outputs": [],
    "source": []
   },
   {
    "cell_type": "code",
-   "execution_count": 8,
+   "execution_count": 382,
    "id": "9656931f",
    "metadata": {},
    "outputs": [
@@ -608,9 +597,9 @@
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