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config.yaml
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# Database Configuration
database:
mysql:
driverName: MYSQL
host: MYSQL_HOST
port: MYSQL_PORT
user: MYSQL_USER
password: MYSQL_PASSWORD
schema:
database: DATABASE
log:
filename:
log_level:
max_size:
max_backups:
max_age:
compress:
encoding:
scarb:
version: 2.3.1
# Model List Configuration
module:
- name: XGBoost
description: XGBoost The idea of combining multiple weak learners into a strong classifier improves the model's predictive ability
- name: Decision tree
description: The main advantage of decision trees is that they are easy to understand and interpret, and can handle continuous and discrete data, missing values, and other issues. However, due to the susceptibility of decision trees to overfitting and underfitting issues, attention should be paid to controlling the complexity and pruning techniques of the tree when using it.
ipfs:
url:
auth:
giza:
user:
passwd:
email:
# Disease category configuration
disease:
Acute Inflammations:
index: 0
positions: ["head", "abdomen", "lowerAbdomen"]
description: "Acute inflammations are rapid and short-term immune responses to harmful stimuli, such as infections or injuries. They involve increased blood flow, swelling, heat, and pain at the affected site. The body's immune cells release chemicals to fight off pathogens and repair damaged tissue. Acute inflammations are crucial for the body's defense mechanism and facilitate the healing process. However, if the inflammation persists or becomes chronic, it can lead to further complications. Proper diagnosis and timely treatment are essential to manage acute inflammations effectively."
inputs:
- name: Temperature
description: Temperature of patient { 35C-42C }
index: 0
input_max: 42.0
input_min: 35.0
input_decimal_length: 1
warn: Please enter a number between 35.0 and 42.0 with a scale of 1 or less
input method: input
select:
- celsius: 0
- name: Occurrence of nausea
description: Occurrence of nausea { yes, no }
index: 1
input method: select
select:
- yes: 1
- no: 0
- name: Lumbar pain
description: Lumbar pain { yes, no }
index: 2
input method: select
select:
- yes: 1
- no: 0
- name: Urine pushing
description: Urine pushing (continuous need for urination) { yes, no }
index: 3
input method: select
select:
- yes: 1
- no: 0
- name: Micturition pains
description: Micturition pains { yes, no }
index: 4
input method: select
select:
- yes: 1
- no: 0
- name: Burning of urethra, itch, swelling of urethra outlet
description: Burning of urethra, itch, swelling of urethra outlet { yes, no }
index: 5
input method: select
select:
- yes: 1
- no: 0
output:
description:
result:
- 0: Normal
- 1: Inflammation of urinary bladder
- 2: Nephritis of renal pelvis origin
- 3: Inflammation of urinary bladder and Nephritis of renal pelvis origin
Breast Cancer:
index: 1
positions: ["chest"]
description: "Breast cancer is a type of cancer that begins in the cells of the breast. It can occur in both men and women, but it is more common in women. Breast cancer typically forms as a tumor in the breast tissue and can spread to other parts of the body if left untreated. Early detection through screenings, such as mammograms, is crucial for successful treatment. Common symptoms include lumps or thickening in the breast, changes in breast shape or size, and nipple discharge. Treatment options may include surgery, chemotherapy, radiation therapy, and hormone therapy."
inputs:
- name: Age range
description:
index: 0
input method: select
select:
- 10-19: 1
- 20-29: 2
- 30-39: 3
- 40-49: 4
- 50-59: 5
- 60-69: 6
- 70-79: 7
- 80-89: 8
- 90-99: 9
- name: Menopause
description:
index: 1
input method: select
select:
- lt40: 0
- ge40: 1
- premeno: 2
- name: Tumor size
description:
index: 2
input method: select
select:
- 0-4: 0
- 5-9: 1
- 10-14: 2
- 15-19: 3
- 20-24: 4
- 25-29: 5
- 30-34: 6
- 35-39: 7
- 40-44: 8
- 45-49: 9
- 50-54: 10
- 55-59: 11
- name: Inv nodes
description:
index: 3
input method: select
select:
- 0-2: 0
- 3-5: 1
- 6-8: 2
- 9-11: 3
- 12-14: 4
- 15-17: 5
- 18-20: 6
- 21-23: 7
- 24-26: 8
- 27-29: 9
- 30-32: 10
- 33-35: 11
- 36-39: 12
- name: Node caps
description:
index: 4
input method: select
select:
- yes: 0
- no: 1
- name: Deg-malig
description:
index: 5
input method: select
select:
- 1: 0
- 2: 1
- 3: 2
- name: Breast
description:
index: 6
input method: select
select:
- left: 0
- right: 1
- name: Breast quad
description:
index: 7
input method: select
select:
- left-up: 0
- left-low: 1
- right-up: 2
- right-low: 3
- center: 4
- name: Irradiat
description:
index: 8
input method: select
select:
- yes: 0
- no: 1
output:
description: Class
result:
- 0: No recurrence events
- 1: Recurrence events
Chronic Kidney Disease:
index: 2
positions: ["head", "lowerAbdomen", "chest", "limbs"]
description: "Chronic Kidney Disease (CKD) is a long-term condition where the kidneys gradually lose their function over time. This can lead to a buildup of waste and fluid in the body, causing various complications. Common causes include diabetes, high blood pressure, and certain genetic conditions. Symptoms may not be apparent in the early stages, but as the disease progresses, individuals may experience fatigue, swelling, and changes in urination patterns. Management involves medication, dietary changes, and, in severe cases, dialysis or kidney transplant. Early detection and lifestyle modifications are crucial for slowing the disease's progression."
inputs:
- name: Age
description: age in years
index: 0
input_max: 120
input_min: 6
input_decimal_length: 0
warn: Please enter an integer between 6 and 120
input method: input
select:
- years old: 0
- name: Blood pressure
description: Blood Pressure(numerical) bp in mm/Hg
index: 1
input_max: 110
input_min: 50
input_decimal_length: 0
warn: Please enter an integer between 50 and 110
input method: input
select:
- mm/Hg: 0
- name: Specific gravity
description: Specific Gravity(nominal)
index: 2
input_max: 1.030
input_min: 1.000
input_decimal_length: 3
warn: Please enter between 1.000 and 1.030 with a scale of 3 or less
input method: input
select:
- "%": 0
- name: Alibumin
description: Albumin(nominal)
index: 3
input method: select
select:
- 0: 0
- 1: 1
- 2: 2
- 3: 3
- 4: 4
- 5: 5
- name: Sugar
description:
index: 4
input method: select
select:
- 0: 0
- 1: 1
- 2: 2
- 3: 3
- 4: 4
- 5: 5
- name: Read blood cells
description:
index: 5
input method: select
select:
- normal: 0
- abnormal: 1
- name: Pus cell
description:
index: 6
input method: select
select:
- normal: 0
- abnormal: 1
- name: Pus cell clumps
description:
index: 7
input method: select
select:
- not present: 0
- present: 1
- name: Bacteria
description:
index: 8
input method: select
select:
- not present: 0
- present: 1
- name: Blood glucose random
description:
index: 9
input_max: 490
input_min: 70
input_decimal_length: 0
warn: Please enter an integer between 70 and 490
input method: input
select:
- mgs/dl: 0
- name: Blood urea
description:
index: 10
input_max: 309
input_min: 10
input_decimal_length: 0
warn: Please enter an integer between 10 and 390
input method: input
select:
- mgs/dl: 0
- name: Serum creatinine
description:
index: 11
input_max: 15.2
input_min: 0.4
input_decimal_length: 1
warn: Please enter between 0.4 and 15.2 with a scale of 1 or less
input method: input
select:
- mgs/dl: 0
- name: Sodium
description:
index: 12
input_max: 150
input_min: 111
input_decimal_length: 0
warn: Please enter an integer between 111 and 150
input method: input
select:
- mEq/L: 0
- name: Potassium
description:
index: 13
input_max: 47.0
input_min: 2.5
input_decimal_length: 1
warn: Please enter between 2.5 and 47.0 with a scale of 1 or less
input method: input
select:
- mEq/L: 0
- name: Hemoglobin
description:
index: 14
input_max: 17.8
input_min: 3.1
input_decimal_length: 1
warn: Please enter between 3.1 and 17.8 with a scale of 1 or less
input method: input
select:
- gms: 0
- name: Packed cell volume
description:
index: 15
input_max: 54.0
input_min: 9.8
input_decimal_length: 1
warn: Please enter between 9.8 and 54.0 with a scale of 1 or less
input method: input
select:
- numerical: 0
- name: White blood cell count
description:
index: 16
input_max: 26400
input_min: 3800
input_decimal_length: 0
warn: Please enter an integer between 3800 and 26400
input method: input
select:
- cells/cumm: 0
- name: Red blood cell count
description:
index: 17
input_max: 8.0
input_min: 2.1
input_decimal_length: 1
warn: Please enter between 2.1 and 8.0 with a scale of 1 or less
input method: input
select:
- millions/cmm: 0
- name: Hypertension
description:
index: 18
input method: select
select:
- yes: 0
- no: 1
- name: Diabetes
description:
index: 19
input method: select
select:
- yes: 0
- no: 1
- name: Coronary artery disease
description:
index: 20
input method: select
select:
- yes: 0
- no: 1
- name: Appetite
description:
index: 21
input method: select
select:
- poor: 0
- good: 1
- name: Pedal edema
description:
index: 22
input method: select
select:
- yes: 0
- no: 1
- name: Anemia
description:
index: 23
input method: select
select:
- yes: 0
- no: 1
output:
description: Class
result:
- 0: Not chronic kidney disease
- 1: Chronic kidney disease
Heart Disease:
index: 3
positions: ["chest"]
description: "Heart disease refers to a range of conditions that affect the heart's function and blood vessels. It includes conditions such as coronary artery disease, heart failure, and arrhythmias. Risk factors include high blood pressure, high cholesterol, smoking, obesity, and diabetes. Symptoms vary depending on the specific condition but may include chest pain, shortness of breath, fatigue, and irregular heartbeat. Diagnosis involves medical history, physical exams, and tests like electrocardiograms and angiograms. Treatment options include lifestyle changes, medication, and in severe cases, procedures like angioplasty or bypass surgery. Early detection, risk factor management, and adopting a heart-healthy lifestyle are essential for preventing heart disease."
inputs:
- name: Age
description: age in years
index: 0
input_max: 120
input_min: 6
input_decimal_length: 0
warn: Please enter an integer between 6 and 120
input method: input
select:
- years old: 0
- name: Sex
description: sex
index: 1
input method: select
select:
- female: 0
- male: 1
- name: Chest pain type
description: chest pain type
index: 2
input method: select
select:
- typical angina: 1
- atypical angina: 2
- non-anginal pain: 3
- asymptomatic: 4
- name: Trestbps
description: resting blood pressure (in mm Hg on admission to the hospital)
index: 3
input_max: 200
input_min: 94
input_decimal_length: 0
warn: Please enter an integer between 94 and 200
input method: input
select:
- mm/Hg: 0
- name: Cholestoral
description: serum cholestoral in mg/dl
index: 4
input_max: 564
input_min: 126
input_decimal_length: 0
warn: Please enter an integer between 126 and 564
input method: input
select:
- mg/dl: 0
- name: Fasting blood sugar
description: fasting blood sugar > 120 mg/dl
index: 5
input method: select
select:
- yes: 1
- no: 0
- name: Resting electrocardiographic
description: resting electrocardiographic results
index: 6
input method: select
select:
- normal: 0
- having ST-T wave abnormality: 1
- showing probable or definite left ventricular hypertrophy by Estes' criteria: 2
- name: Thalach
description: maximum heart rate achieved
index: 7
input_max: 202
input_min: 71
input_decimal_length: 0
warn: Please enter an integer between 71 and 202
input method: input
select:
- beats per minute: 0
- name: Exercise induced angina
description: exercise induced angina
index: 8
input method: select
select:
- no: 0
- yes: 1
- name: ST depression induced by exercise relative to rest
description: ST depression induced by exercise relative to rest
index: 9
input_max: 6.2
input_min: 0
input_decimal_length: 1
warn: Please enter between 0 and 6.2 with a scale of 1 or less
input method: input
select:
- mm: 0
- name: Slope
description: the slope of the peak exercise ST segment
index: 10
input method: select
select:
- upsloping: 1
- flat: 2
- downsloping: 3
- name: Number of major vessels colored by flourosopy
description: number of major vessels (0-3) colored by flourosopy
index: 11
input method: select
select:
- 0: 0
- 1: 1
- 2: 2
- 3: 3
- name: Thalassemia
description:
index: 12
input method: select
select:
- normal: 3
- fixed defect: 6
- reversable defect: 7
output:
description: The probability of suffering from heart disease
result:
- 0: "0%"
- 1: "25%"
- 2: "50%"
- 3: "75%"
- 4: "100%"
Heart Failure Clinical Records:
index: 4
positions: ["chest"]
description: "Heart failure clinical records contain a patient's medical history, diagnostic test results (e.g., echocardiograms, ECGs), medication regimens, and treatment plans. They also document symptoms, such as shortness of breath, edema, and fatigue, along with the patient's functional status. Clinical records track vital signs, including blood pressure and heart rate, and may include laboratory data, like B-type natriuretic peptide levels. These records serve as a comprehensive guide for healthcare providers, enabling them to assess disease progression, adjust treatments, and monitor the patient's response to therapy. Regular updates to these records are crucial for managing heart failure effectively."
inputs:
- name: Age
description: age of the patient
index: 0
input_max: 120
input_min: 6
input_decimal_length: 0
warn: Please enter an integer between 6 and 120
input method: input
select:
- years old: 0
- name: Anemia
description: decrease of red blood cells or hemoglobin
index: 1
input method: select
select:
- no: 0
- yes: 1
- name: Creatinine phosphokinase
description: level of the CPK enzyme in the blood (mcg/L)
index: 2
input_max: 7861
input_min: 23
input_decimal_length: 0
warn: Please enter an integer between 23 and 7861
input method: input
select:
- mcg/L: 0
- name: Diabetes
description: if the patient has diabetes
index: 3
input method: select
select:
- no: 0
- yes: 1
- name: Ejection fraction
description: percentage of blood leaving the heart at each contraction (percentage)
index: 4
input_max: 80
input_min: 14
input_decimal_length: 0
warn: Please enter an integer between 14 and 80
input method: input
select:
- "%": 0
- name: High blood pressure
description:
index: 5
input method: select
select:
- no: 0
- yes: 1
- name: Platelets
description: platelets in the blood (kiloplatelets/mL)
index: 6
input_max: 850000
input_min: 25100
input_decimal_length: 0
warn: Please enter an integer between 25100 and 850000
input method: input
select:
- kiloplatelets/mL: 0
- name: Serum creatinine
description: level of serum creatinine in the blood (mg/dL)
index: 7
input_max: 9.4
input_min: 0.5
input_decimal_length: 1
warn: Please enter between 0.5 and 9.4 with a scale of 1 or less
input method: input
select:
- mg/dL: 0
- name: Serum sodium
description: level of serum sodium in the blood (mEq/L)
index: 8
input_max: 148.0
input_min: 113.0
input_decimal_length: 1
warn: Please enter between 113.0 and 148.0 with a scale of 1 or less
input method: input
select:
- mEq/L: 0
- name: Sex
description: woman or man
index: 9
input method: select
select:
- female: 0
- male: 1
- name: Smoking
description: if the patient smokes or not (boolean)
index: 10
input method: select
select:
- no: 0
- yes: 1
- name: Time
description: follow-up period (days)
index: 11
input_max: 285
input_min: 4
input_decimal_length: 0
warn: Please enter an integer between 4 and 285
input method: input
select:
- days: 0
output:
description: Death event
result:
- 0: no
- 1: yes
Lymphography:
index: 5
positions: ["head", "neck", "chest", "abdomen", "lowerAbdomen", "limbs"]
description: "Lymphography is a diagnostic imaging procedure used to visualize the lymphatic system. Contrast dye is injected into the lymphatic vessels, allowing them to be seen on X-ray or other imaging modalities. It helps identify blockages, abnormalities, or diseases affecting the lymph nodes and lymphatic vessels. Lymphography can aid in the diagnosis of conditions such as lymphedema, lymphoma, or infections. The procedure involves minimal discomfort, and the results provide valuable information for treatment planning. However, with the advancement of other imaging techniques, such as CT or MRI, lymphography is now less commonly used but may still have specific clinical indications."
inputs:
- name: Lymphatics
description: normal, arched, deformed, displaced
index: 0
inputs method: select
select:
- normal: 1
- arched: 2
- deformed: 3
- displaced: 4
- name: Block of affere
description: no, yes
index: 1
inputs method: select
select:
- no: 1
- yes: 2
- name: Bl of lymph c
description: no, yes
index: 2
inputs method: select
select:
- no: 1
- yes: 2
- name: Bl of lymph s
description: no, yes
index: 3
inputs method: select
select:
- no: 1
- yes: 2
- name: By pass
description: no, yes
index: 4
inputs method: select
select:
- no: 1
- yes: 2
- name: Extravasates
description: no, yes
index: 5
inputs method: select
select:
- no: 1
- yes: 2
- name: Regeneration of
description: no, yes
index: 6
inputs method: select
select:
- no: 1
- yes: 2
- name: Early uptake in
description: no, yes
index: 7
inputs method: select
select:
- no: 1
- yes: 2
- name: Lym nodes dimin
description: 0-3
index: 8
inputs method: select
select:
- 0: 0
- 1: 1
- 2: 2
- 3: 3
- name: Lym nodes enlar
description: 1-4
index: 9
inputs method: select
select:
- 1: 1
- 2: 2
- 3: 3
- 4: 4
- name: Changes in lym
description: bean, oval, round
index: 10
inputs method: select
select:
- bean: 1
- oval: 2
- round: 3
- name: Defect in node
description: no, lacunar, lac. marginal, lac. central
index: 11
inputs method: select
select:
- no: 1
- lacunar: 2
- lac marginal: 3
- lac central: 4
- name: Changes in node
description: no, lacunar, lac. margin, lac. central
index: 12
inputs method: select
select:
- no: 1
- lacunar: 2
- lac. margin: 3
- lac. central: 4
- name: Changes in stru
description: no, grainy, drop-like, coarse, diluted, reticular, stripped, faint,
index: 13
inputs method: select
select:
- no: 1
- grainy: 2
- drop-like: 3
- coarse: 4
- diluted: 5
- reticular: 6
- stripped: 7
- faint: 8
- name: Special forms
description: no, chalices, vesicles
index: 14
inputs method: select
select:
- no: 1
- chalices: 2
- vesicles: 3
- name: Dislocation of
description: no, yes
index: 15
inputs method: select
select:
- no: 1
- yes: 2
- name: Exclusion of no
description: no, yes
index: 16
inputs method: select
select:
- no: 1
- yes: 2
- name: No of nodes in
description:
index: 17
inputs method: select
select:
- 0-9: 0
- 10-19: 1
- 20-29: 2
- 30-39: 3
- 40-49: 4
- 50-59: 5
- 60-69: 6
- ">=70": 7
output:
description: Class
result:
- 0: normal find
- 1: metastases
- 2: malign lymph
- 3: fibrosis
Parkinsons:
index: 6
positions: ["head", "limbs"]
description: "Parkinson's disease is a neurodegenerative disorder affecting movement. It is characterized by tremors, bradykinesia, rigidity, and postural instability. The condition results from the loss of dopamine-producing cells in the brain. Symptoms also include changes in speech and writing, as well as non-motor issues like cognitive impairment and depression. While the exact cause is unknown, both genetic and environmental factors are believed to play a role. Treatment involves medication, physical therapy, and in some cases, deep brain stimulation. Although there is currently no cure, early detection and management can significantly improve quality of life for individuals with Parkinson's."
inputs:
- name: "MDVP:Fo(Hz)"
description: Average vocal fundamental frequency
index: 0
input_max: 260.105
input_min: 88.333
input_decimal_length: 3
warn: Please enter between 88.333 and 260.105 with a scale of 3 or less
input method: input
select:
- Hz: 0
- name: "MDVP:Fhi(Hz)"
description: Maximum vocal fundamental frequency
index: 1
input_max: 592.03
input_min: 102.145
input_decimal_length: 3
warn: Please enter between 102.145 and 592.03 with a scale of 3 or less
input method: input
select:
- Hz: 0
- name: "MDVP:Flo(Hz)"
description: Minimum vocal fundamental frequency
index: 2
input_max: 239.17
input_min: 65.476
input_decimal_length: 3
warn: Please enter between 65.476 and 239.17 with a scale of 3 or less
input method: input
select:
- Hz: 0
- name: "MDVP-Jitter"
description:
index: 3
input_max: 0.03316
input_min: 0.00168
input_decimal_length: 5
warn: Please enter between 0.00168 and 0.03316 with a scale of 5 or less
input method: input
select:
- "%": 0
- name: "MDVP:Jitter(Abs)"
description: Several measures of variation in fundamental frequency
index: 4
input_max: 0.00026
input_min: 0.000007
input_decimal_length: 6
warn: Please enter between 0.000007 and 0.00026 with a scale of 6 or less
input method: input
select:
- "%": 0
- name: "MDVP:RAP"
description: Several measures of variation in fundamental frequency
index: 5
input_max: 0.02144
input_min: 0.00068
input_decimal_length: 5
warn: Please enter between 0.00068 and 0.02144 with a scale of 5 or less
input method: input
select:
- "%": 0
- name: "MDVP:PPQ"
description: Several measures of variation in fundamental frequency
index: 6
input_max: 0.01958
input_min: 0.00092
input_decimal_length: 5
warn: Please enter between 0.00092 and 0.01958 with a scale of 5 or less
input method: input
select:
- "%": 0
- name: "Jitter:DDP"
description: Several measures of variation in fundamental frequency
index: 7
input_max: 0.06433
input_min: 0.00204
input_decimal_length: 5
warn: Please enter between 0.00204 and 0.06433 with a scale of 5 or less
input method: input
select:
- "%": 0
- name: "MDVP:Shimmer"
description: Several measures of variation in amplitude
index: 8
input_max: 0.11908
input_min: 0.00954
input_decimal_length: 5
warn: Please enter between 0.00954 and 0.11908 with a scale of 5 or less
input method: input
select:
- "%": 0
- name: "MDVP:Shimmer(dB)"
description: Several measures of variation in amplitude
index: 9
input_max: 1.302
input_min: 0.085
input_decimal_length: 3
warn: Please enter between 0.085 and 1.302 with a scale of 3 or less
input method: input
select:
- "%": 0
- name: "Shimmer:APQ3"
description: Several measures of variation in amplitude
index: 10
input_max: 0.05647
input_min: 0.00455
input_decimal_length: 5
warn: Please enter between 0.00455 and 0.05647 with a scale of 5 or less
input method: input
select:
- "%": 0
- name: "Shimmer:APQ5"
description: Several measures of variation in amplitude
index: 11
input_max: 0.0794
input_min: 0.0057
input_decimal_length: 4
warn: Please enter between 0.0057 and 0.0794 with a scale of 4 or less
input method: input
select:
- "%": 0
- name: "MDVP:APQ"
description: Several measures of variation in amplitude
index: 12
input_max: 0.13778
input_min: 0.00719
input_decimal_length: 5
warn: Please enter between 0.00719 and 0.13778 with a scale of 5 or less
input method: input
select:
- "%": 0
- name: "Shimmer:DDA"
description: Several measures of variation in amplitude
index: 13
input_max: 0.16942
input_min: 0.01364
input_decimal_length: 5
warn: Please enter between 0.01364 and 0.16942 with a scale of 5 or less
input method: input
select:
- "%": 0
- name: NHR
description: Two measures of ratio of noise to tonal components in the voice
index: 14
input_max: 0.31482
input_min: 0.00065
input_decimal_length: 5
warn: Please enter between 0.00065 and 0.31482 with a scale of 5 or less
input method: input
select:
- "%": 0
- name: HNR
description: Two measures of ratio of noise to tonal components in the voice
index: 15
input_max: 33.047
input_min: 8.441
input_decimal_length: 3
warn: Please enter between 8.441 and 33.047 with a scale of 3 or less
input method: input
select: