diff --git a/README.Rmd b/README.Rmd
index 4a831b21..aaae5bab 100755
--- a/README.Rmd
+++ b/README.Rmd
@@ -3,6 +3,10 @@ title: "tidybulk - part of tidyTranscriptomics"
output: github_document
---
+
+[![Lifecycle:maturing](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/#maturing) [![R build status](https://github.com/stemangiola/tidybulk/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/stemangiola/tidybulk/actions)
+
+
```{r echo=FALSE}
knitr::opts_chunk$set( fig.path = "man/figures/")
```
@@ -10,10 +14,6 @@ knitr::opts_chunk$set( fig.path = "man/figures/")
**Brings transcriptomics to the tidyverse!** (SEO: tidy differential expression)
#
-
-
- [![Lifecycle:maturing](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/#maturing)
-
website: [stemangiola.github.io/tidybulk/](http://stemangiola.github.io/tidybulk/)
diff --git a/README.md b/README.md
index b12fa926..7f812105 100755
--- a/README.md
+++ b/README.md
@@ -1,15 +1,18 @@
tidybulk - part of tidyTranscriptomics
================
+
+
+[![Lifecycle:maturing](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/#maturing)
+[![R build
+status](https://github.com/stemangiola/tidybulk/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/stemangiola/tidybulk/actions)
+
+
**Brings transcriptomics to the tidyverse\!** (SEO: tidy differential
expression)
#
-
-[![Lifecycle:maturing](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/#maturing)
-
-
website:
[stemangiola.github.io/tidybulk/](http://stemangiola.github.io/tidybulk/)
@@ -450,18 +453,18 @@ tt.norm.tSNE %>%
```
## # A tibble: 251 x 4
- ## tSNE1 tSNE2 sample Call
- ##
- ## 1 1.29 9.12 TCGA-A1-A0SD-01A-11R-A115-07 LumA
- ## 2 0.891 -6.20 TCGA-A1-A0SF-01A-11R-A144-07 LumA
- ## 3 13.7 7.86 TCGA-A1-A0SG-01A-11R-A144-07 LumA
- ## 4 -6.78 7.44 TCGA-A1-A0SH-01A-11R-A084-07 LumA
- ## 5 -2.85 7.10 TCGA-A1-A0SI-01A-11R-A144-07 LumB
- ## 6 -5.26 -0.763 TCGA-A1-A0SJ-01A-11R-A084-07 LumA
- ## 7 -9.03 -29.8 TCGA-A1-A0SK-01A-12R-A084-07 Basal
- ## 8 -14.0 5.42 TCGA-A1-A0SM-01A-11R-A084-07 LumA
- ## 9 -12.7 4.75 TCGA-A1-A0SN-01A-11R-A144-07 LumB
- ## 10 16.4 14.6 TCGA-A1-A0SQ-01A-21R-A144-07 LumA
+ ## tSNE1 tSNE2 sample Call
+ ##
+ ## 1 -4.95 5.57 TCGA-A1-A0SD-01A-11R-A115-07 LumA
+ ## 2 6.24 -11.3 TCGA-A1-A0SF-01A-11R-A144-07 LumA
+ ## 3 -11.4 2.97 TCGA-A1-A0SG-01A-11R-A144-07 LumA
+ ## 4 -6.53 -8.35 TCGA-A1-A0SH-01A-11R-A084-07 LumA
+ ## 5 -7.29 -12.6 TCGA-A1-A0SI-01A-11R-A144-07 LumB
+ ## 6 1.78 5.05 TCGA-A1-A0SJ-01A-11R-A084-07 LumA
+ ## 7 28.4 -13.7 TCGA-A1-A0SK-01A-12R-A084-07 Basal
+ ## 8 10.1 2.78 TCGA-A1-A0SM-01A-11R-A084-07 LumA
+ ## 9 9.19 3.94 TCGA-A1-A0SN-01A-11R-A144-07 LumB
+ ## 10 -17.8 9.12 TCGA-A1-A0SQ-01A-21R-A144-07 LumA
## # … with 241 more rows
``` r
@@ -866,18 +869,18 @@ tt.norm.SNN %>%
```
## # A tibble: 251 x 5
- ## tSNE1 tSNE2 sample Call `cluster SNN`
- ##
- ## 1 1.29 9.12 TCGA-A1-A0SD-01A-11R-A115-07 LumA 0
- ## 2 0.891 -6.20 TCGA-A1-A0SF-01A-11R-A144-07 LumA 2
- ## 3 13.7 7.86 TCGA-A1-A0SG-01A-11R-A144-07 LumA 1
- ## 4 -6.78 7.44 TCGA-A1-A0SH-01A-11R-A084-07 LumA 0
- ## 5 -2.85 7.10 TCGA-A1-A0SI-01A-11R-A144-07 LumB 0
- ## 6 -5.26 -0.763 TCGA-A1-A0SJ-01A-11R-A084-07 LumA 1
- ## 7 -9.03 -29.8 TCGA-A1-A0SK-01A-12R-A084-07 Basal 3
- ## 8 -14.0 5.42 TCGA-A1-A0SM-01A-11R-A084-07 LumA 2
- ## 9 -12.7 4.75 TCGA-A1-A0SN-01A-11R-A144-07 LumB 2
- ## 10 16.4 14.6 TCGA-A1-A0SQ-01A-21R-A144-07 LumA 1
+ ## tSNE1 tSNE2 sample Call `cluster SNN`
+ ##
+ ## 1 -4.95 5.57 TCGA-A1-A0SD-01A-11R-A115-07 LumA 0
+ ## 2 6.24 -11.3 TCGA-A1-A0SF-01A-11R-A144-07 LumA 2
+ ## 3 -11.4 2.97 TCGA-A1-A0SG-01A-11R-A144-07 LumA 1
+ ## 4 -6.53 -8.35 TCGA-A1-A0SH-01A-11R-A084-07 LumA 0
+ ## 5 -7.29 -12.6 TCGA-A1-A0SI-01A-11R-A144-07 LumB 0
+ ## 6 1.78 5.05 TCGA-A1-A0SJ-01A-11R-A084-07 LumA 1
+ ## 7 28.4 -13.7 TCGA-A1-A0SK-01A-12R-A084-07 Basal 3
+ ## 8 10.1 2.78 TCGA-A1-A0SM-01A-11R-A084-07 LumA 2
+ ## 9 9.19 3.94 TCGA-A1-A0SN-01A-11R-A144-07 LumB 2
+ ## 10 -17.8 9.12 TCGA-A1-A0SQ-01A-21R-A144-07 LumA 1
## # … with 241 more rows
``` r