cb_sniffer in scATAC data?

[AmosFong1]

I am working with 10X Multiome data, and I was able to run cb_sniffer on my GEX bams. However, running cb_sniffer on my ATAC bams with the same barcodes and variant files for the successful GEX runs, gives me no results (only headers printed in *_counts_CB.tsv and *_counts_UB.tsv. I was wondering if this is expected or have I made an error? Is there anything that needs to be adapted to accommodate cb_sniffer runs using ATAC data?

[AmosFong1]

@sridnona bump

[sridhar0605]

Hey @AmosFong1 ,
Thanks for tagging, sorry i did not get the initial issue alert. I dont think i have tested this on scATAC data. Do you have demo data that you could share as a tar file? (the variant call file and bamfile)

[AmosFong1]

Hello @sridhar0605 here is some dummy data. It seems GitHub doesn't accept tar so I used gzip, and the bam file should only contain 20 reads:
dummy_variant_file.txt
dummy_bam_file.bam.gz

Please let me know if anything else is needed from me