diff --git a/CHANGES.md b/CHANGES.md index 4c765b9..8d45e7d 100644 --- a/CHANGES.md +++ b/CHANGES.md @@ -1,5 +1,9 @@ #PAM50 Template +##2019-10-29 (CG) +- Added template/PAM50_label_spinal_levels.nii.gz +- Clarify label names in template/info_label.txt + ##2018-12-11 (BDL) - Aligned the template with the ICBM152 (more info here: https://github.com/neuropoly/spinalcordtoolbox/issues/2085) - Cropped the template just above C1 vertebral label diff --git a/template/PAM50_label_spinal_levels.nii.gz b/template/PAM50_label_spinal_levels.nii.gz new file mode 100644 index 0000000..0caae0e Binary files /dev/null and b/template/PAM50_label_spinal_levels.nii.gz differ diff --git a/template/info_label.txt b/template/info_label.txt index e6945eb..ff718f3 100644 --- a/template/info_label.txt +++ b/template/info_label.txt @@ -4,15 +4,16 @@ 0, T1-weighted template, PAM50_t1.nii.gz 1, T2-weighted template, PAM50_t2.nii.gz 2, T2S-weighted template, PAM50_t2s.nii.gz -3, spinal cord, PAM50_cord.nii.gz -4, white matter, PAM50_wm.nii.gz -5, gray matter, PAM50_gm.nii.gz -6, cerebrospinal fluid, PAM50_csf.nii.gz -7, vertebral labeling, PAM50_levels.nii.gz -8, continuous vertebral labeling, PAM50_levels_continuous.nii.gz -9, vertebral body labeling, PAM50_label_body.nii.gz -10, intervertebral discs labeling, PAM50_label_disc.nii.gz -11, intervertebral discs labeling posterior, PAM50_label_discPosterior.nii.gz -12, spine, PAM50_spine.nii.gz -13, centerline, PAM50_centerline.nii.gz +3, spinal cord mask (binary), PAM50_cord.nii.gz +4, white matter mask (probabilistic), PAM50_wm.nii.gz +5, gray matter mask (probabilistic), PAM50_gm.nii.gz +6, cerebrospinal fluid mask (binary), PAM50_csf.nii.gz +7, spinal cord mask with discrete vertebral levels, PAM50_levels.nii.gz +8, spinal cord mask with continuous vertebral levels, PAM50_levels_continuous.nii.gz +9, point-wise vertebral body labels, PAM50_label_body.nii.gz +10, point-wise intervertebral disc labels, PAM50_label_disc.nii.gz +11, point-wise posterior intervertebral disc labels, PAM50_label_discPosterior.nii.gz +12, spine mask (binary), PAM50_spine.nii.gz +13, spinal cord centerline, PAM50_centerline.nii.gz +14, point-wise spinal level labels, PAM50_label_spinal_levels.nii.gz