move build configuration from setup.cfg to pyproject.toml

docs/conf.py

@@ -15,6 +15,8 @@
 import importlib
 import sys
 import os
+
+import toml
 from packaging.version import Version
 from configparser import ConfigParser
 
@@ -28,9 +30,6 @@ def setup(app):
     except AttributeError:
         app.add_stylesheet("stsci.css")
 
-conf = ConfigParser()
-
-
 # If extensions (or modules to document with autodoc) are in another directory,
 # add these directories to sys.path here. If the directory is relative to the
 # documentation root, use os.path.abspath to make it absolute, like shown here.
@@ -39,8 +38,8 @@ def setup(app):
 sys.path.insert(0, os.path.abspath('exts/'))
 
 # -- General configuration ------------------------------------------------
-conf.read([os.path.join(os.path.dirname(__file__), '..', 'setup.cfg')])
-setup_cfg = dict(conf.items('metadata'))
+conf = toml.load('../pyproject.toml')
+setup_cfg = conf['project']
 
 # If your documentation needs a minimal Sphinx version, state it here.
 #needs_sphinx = '1.3'
@@ -130,7 +129,7 @@ def check_sphinx_version(expected_version):
 
 # General information about the project
 project = setup_cfg['name']
-author = setup_cfg['author']
+author = setup_cfg['authors'][0]['name']
 copyright = '{0}, {1}'.format(datetime.datetime.now().year, author)
 
 # The version info for the project you're documenting, acts as replacement for

pyproject.toml

@@ -1,10 +1,177 @@
+[project]
+name = 'jwst'
+version = '0.0.0'
+description = 'Library for calibration of science observations from the James Webb Space Telescope'
+readme = 'README.md'
+requires-python = '>=3.8'
+license = { file = 'LICENSE' }
+authors = [{ name = 'JWST calibration pipeline developers' }]
+classifiers = [
+    'Intended Audience :: Science/Research',
+    'Topic :: Scientific/Engineering :: Astronomy',
+    'License :: OSI Approved :: BSD License',
+    'Operating System :: MacOS :: MacOS X',
+    'Operating System :: POSIX',
+    'Programming Language :: Python :: 3',
+    'Programming Language :: Python :: 3 :: Only',
+    'Programming Language :: Python :: 3.8',
+    'Programming Language :: Python :: 3.9',
+]
+dependencies = [
+    'asdf >=2.11.1',
+    'asdf-astropy >=0.2.1',
+    'astropy >=5.0.4',
+    'BayesicFitting >=2.7.2',
+    'crds >=11.13.1',
+    'drizzle >=1.13.4',
+    'gwcs >=0.18.0',
+    'jsonschema >=4.0.1',
+    'numpy >=1.20',
+    'photutils >=1.4.0',
+    'psutil >=5.7.2',
+    'poppy >=1.0.2',
+    'pyparsing >=2.2.1',
+    'requests >=2.22',
+    'scikit-image >=0.17.2',
+    'scipy >=1.6.0',
+    'spherical-geometry >=1.2.22',
+    'stcal >=0.7.1',
+    'stdatamodels >=0.4.2, <1.0',
+    'stpipe >=0.3.3, <1.0',
+    'stsci.image >=2.3.5',
+    'stsci.imagestats >=1.6.3',
+    'tweakwcs >=0.7.2',
+]
+
+[project.optional-dependencies]
+aws = ['stsci-aws-utils >=0.1.2']
+docs = [
+    'packaging',
+    'matplotlib',
+    'mistune ~=0.8.4',
+    'sphinx',
+    'sphinx-asdf >=0.1.1',
+    'sphinx-astropy',
+    'sphinx-automodapi',
+    'sphinx-rtd-theme',
+    'stsci-rtd-theme',
+    'toml',
+]
+sdp = [
+    'jplephem >=2.9',
+    'pymssql',
+    'pysiaf',
+]
+test = [
+    'ci-watson >=0.5.0',
+    'codecov >=1.6.0',
+    'colorama >=0.4.1',
+    'flake8 >=3.6.0',
+    'getch >=1.0.0',
+    'pyproject-flake8',
+    'pytest >=6.0.0',
+    'pytest-cov >=2.9.0',
+    'pytest-doctestplus >=0.10.0',
+    'pytest-openfiles >=0.5.0',
+    'requests_mock >=1.0',
+]
+
+[project.urls]
+'documentation' = 'https://jwst-pipeline.readthedocs.io/en/stable/'
+'repository' = 'https://github.com/spacetelescope/jwst'
+'tracker' = 'https://github.com/spacetelescope/jwst/issues'
+
+[project.entry-points]
+'asdf.extensions' = { jwst_pipeline = 'jwst.transforms.integration:get_extensions' }
+asdf_extensions = { jwst_datamodel = 'jwst.datamodels.extension:DataModelExtension' }
+'asdf.resource_mappings' = { jwst_pipeline = 'jwst.transforms.integration:get_resource_mappings' }
+'stpipe.steps' = { jwst = 'jwst.stpipe.integration:get_steps' }
+pytest11 = { report_crds_context = 'pytest_crds.plugin' }
+
 [build-system]
 requires = [
-    "setuptools>=42",
-    "setuptools_scm[toml]>=3.4",
-    "wheel",
-    "oldest-supported-numpy",
+    'setuptools>=42',
+    'setuptools_scm[toml]>=3.4',
+    'wheel',
+    'oldest-supported-numpy',
 ]
-build-backend = "setuptools.build_meta"
+build-backend = 'setuptools.build_meta'
 
 [tool.setuptools_scm]
+
+[tool.setuptools]
+packages = ['jwst']
+
+[tool.flake8]
+select = ['F', 'W', 'E', 'C']
+# We should set max line length lower eventually
+max-line-length = 130
+exclude = [
+    'jwst/extern',
+    'docs',
+    'jwst/associations',
+    'jwst/fits_generator',
+    '.tox',
+    '.eggs',
+    'build',
+]
+per-file-ignores = [
+    'jwst/ramp_fitting/tests/compare_cr_navg_files.py:E',
+    'jwst/ramp_fitting/tests/compare_crs.py:E',
+    'jwst/ramp_fitting/tests/compare_cr_files.py:E',
+    'jwst/ramp_fitting/tests/create_cube.py:E',
+    'jwst/ramp_fitting/tests/mc_3d.py:E',
+]
+ignore = [
+    'E231', # Missing whitespace after ',', ';', or ':'
+    'E241', # Multiple spaces after ','
+    'W503', # Line break occurred before a binary operator
+    'W504', # Line break occurred after a binary operator
+]
+
+[tool.pytest]
+minversion = 6.0
+norecursedirs = [
+    'docs/_build',
+    'docs/exts',
+    'jwst/timeconversion',
+    'jwst/associations/tests/data',
+    'scripts',
+    '.tox',
+]
+asdf_schema_tests_enabled = true
+asdf_schema_validate_default = false
+asdf_schema_root = 'jwst/transforms/resources/schemas jwst/datamodels/schemas'
+junit_family = 'xunit2'
+inputs_root = 'jwst-pipeline'
+results_root = 'jwst-pipeline-results'
+text_file_format = 'rst'
+doctest_plus = 'enabled'
+doctest_rst = 'enabled'
+addopts = '--show-capture=no --open-files --report-crds-context'
+filterwarnings = ['ignore:Models in math_functions:astropy.utils.exceptions.AstropyUserWarning']
+
+[tool.coverage]
+run = { omit = [
+    'jwst/conftest.py',
+    'jwst/setup.py',
+    'jwst/tests/test*',
+    'jwst/regtest/test*',
+    'jwst/*/tests/*',
+    'docs/*',
+    # And list these again for running against installed version
+    '*/jwst/conftest.py',
+    '*/jwst/setup.py',
+    '*/jwst/tests/test*',
+    '*/jwst/regtest/test*',
+    '*/jwst/*/tests/*',
+    '*/docs/*',
+] }
+report = { exclude_lines = [
+    'pragma: no cover',
+    'if self.debug:',
+    'except ImportError',
+    'raise AssertionError',
+    'raise NotImplementedError',
+    'if __name__ == "__main__":',
+] }