README-ms-format.md

Read a network in with Newick format

This is in the main.cpp file right now, so main.cpp should just be adjusted for now to test different Newick strings (do not commit your local changes):

#include "SimSuite.hpp"
#include <iostream>

int main(int narg, char **argv) {
    // Convert extended Newick to MS
    std::string msString = newickToMS("(((A:1,(B:0.3)#H1:0.7::0.9)e:1,(C:0.5,#H1:0.2::0.1)f:1.5)g:0.3,D:2.3)h;");
    std::cout << msString << std::endl;
}

Running the code

git clone https://github.com/solislemuslab/simulation-suite.git
cd simulation-suite/src/

# For now, msString must be adjusted in main.cpp to test different Newick strings
make
./main