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How canI generate go_essential_all for mouse #84

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mabaoweireadingene opened this issue Sep 6, 2024 · 0 comments
Open

How canI generate go_essential_all for mouse #84

mabaoweireadingene opened this issue Sep 6, 2024 · 0 comments

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@mabaoweireadingene
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Hi,

Thanks for this great package. I’m running into some issues
“”“
def get_similarity_network(network_type, adata, threshold, k,
data_path, data_name, split, seed, train_gene_set_size,
set2conditions, default_pert_graph=True, pert_list=None):

if network_type == 'co-express':
    df_out = get_coexpression_network_from_train(adata, threshold, k,
                                                 data_path, data_name, split,
                                                 seed, train_gene_set_size,
                                                 set2conditions)
elif network_type == 'go':
    if default_pert_graph:
        server_path = 'https://dataverse.harvard.edu/api/access/datafile/6934319'
        tar_data_download_wrapper(server_path,
                                 os.path.join(data_path, 'go_essential_all'),
                                 data_path)

”“”
I want to conduct using mouse,but I needs go_essential_all file.

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