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Failed to set number of max iterations to more than 10 #3

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liboxun opened this issue Mar 2, 2020 · 2 comments
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Failed to set number of max iterations to more than 10 #3

liboxun opened this issue Mar 2, 2020 · 2 comments

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@liboxun
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liboxun commented Mar 2, 2020

When I tried to run Harmony using:

hm.run_harmony(data_mat, meta_data, vars_use, max_iter_harmony=50)

It still only ran 10 iterations and stopped prematurely before reaching convergence. Any idea how to harmonize a dataset with > 10 iterations?

Thanks in advance!
@slowkow slowkow closed this as completed in 3f24468 Mar 3, 2020
@slowkow
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slowkow commented Mar 3, 2020

Thanks for reporting the issue! I hope that the latest commit fixes it.

Could I please ask if you might be able to test the latest version from Github?

pip install git+https://github.com/slowkow/harmonypy

@liboxun
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liboxun commented Mar 5, 2020

This update (0.0.4) fixed it! Thanks!

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@slowkow @liboxun