DESCRIPTION

Package: cytometree
Type: Package
Title: Automated Cytometry Gating and Annotation
Version: 2.0.5
Date: 2022-11-08
Authors@R: 
    c(person(given = "Chariff",
             family = "Alkhassim",
             role = c("aut")),
      person(given = "Boris P",
             family = "Hejblum",
             email = "boris.hejblum@u-bordeaux.fr",
             role = c("cre", "aut")),
      person(given = "Anthony",
             family = "Devaux",
             role = c("aut")),
      person(given = "Van Hung Huynh",
             family = "Tran",
             role = c("aut")),
      person(given = "Melany",
             family = "Durand",
             role = c("aut"))
             )
Maintainer: Boris P Hejblum <boris.hejblum@u-bordeaux.fr>
LinkingTo: Rcpp, RcppArmadillo
Description: Given the hypothesis of a bi-modal distribution of cells for
    each marker, the algorithm constructs a binary tree, the nodes of which are
    subpopulations of cells. At each node, observed cells and markers are modeled
    by both a family of normal distributions and a family of bi-modal normal mixture
    distributions. Splitting is done according to a normalized difference of AIC
    between the two families. Method is detailed in: Commenges, Alkhassim, Gottardo, 
    Hejblum & Thiebaut (2018) <doi: 10.1002/cyto.a.23601>. 
License: LGPL-3 | file LICENSE
LazyData: true
Depends:
    R (>= 3.1.0),
    Rcpp (>= 0.12.11)
Imports:
    ggplot2,
    graphics,
    igraph,
    mclust,
    methods,
    stats,
    cowplot,
    GoFKernel
RoxygenNote: 7.2.1
URL: https://sistm.github.io/cytometree/, https://github.com/sistm/Cytometree/
BugReports: https://github.com/sistm/Cytometree/issues
Encoding: UTF-8
Suggests:
    knitr,
    formatR,
    rmarkdown,
    viridis,
    testthat
VignetteBuilder: knitr