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<!DOCTYPE HTML>
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<head>
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<title>Class Hierarchy</title>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
<meta name="dc.created" content="2020-09-23">
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<li><a href="index.html">Overview</a></li>
<li>Package</li>
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<li><a href="deprecated-list.html">Deprecated</a></li>
<li><a href="index-files/index-1.html">Index</a></li>
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<h1 class="title">Hierarchy For All Packages</h1>
<span class="packageHierarchyLabel">Package Hierarchies:</span>
<ul class="horizontal">
<li><a href="bio/singa/chemistry/annotations/package-tree.html">bio.singa.chemistry.annotations</a>, </li>
<li><a href="bio/singa/chemistry/annotations/taxonomy/package-tree.html">bio.singa.chemistry.annotations.taxonomy</a>, </li>
<li><a href="bio/singa/chemistry/features/package-tree.html">bio.singa.chemistry.features</a>, </li>
<li><a href="bio/singa/chemistry/features/databases/chebi/package-tree.html">bio.singa.chemistry.features.databases.chebi</a>, </li>
<li><a href="bio/singa/chemistry/features/databases/pubchem/package-tree.html">bio.singa.chemistry.features.databases.pubchem</a>, </li>
<li><a href="bio/singa/chemistry/features/databases/sequencevariants/package-tree.html">bio.singa.chemistry.features.databases.sequencevariants</a>, </li>
<li><a href="bio/singa/chemistry/features/databases/unichem/package-tree.html">bio.singa.chemistry.features.databases.unichem</a>, </li>
<li><a href="bio/singa/chemistry/features/databases/uniprot/package-tree.html">bio.singa.chemistry.features.databases.uniprot</a>, </li>
<li><a href="bio/singa/chemistry/features/diffusivity/package-tree.html">bio.singa.chemistry.features.diffusivity</a>, </li>
<li><a href="bio/singa/chemistry/features/identifiers/package-tree.html">bio.singa.chemistry.features.identifiers</a>, </li>
<li><a href="bio/singa/chemistry/features/logp/package-tree.html">bio.singa.chemistry.features.logp</a>, </li>
<li><a href="bio/singa/chemistry/features/molarmass/package-tree.html">bio.singa.chemistry.features.molarmass</a>, </li>
<li><a href="bio/singa/chemistry/features/permeability/package-tree.html">bio.singa.chemistry.features.permeability</a>, </li>
<li><a href="bio/singa/chemistry/features/radius/package-tree.html">bio.singa.chemistry.features.radius</a>, </li>
<li><a href="bio/singa/chemistry/features/reactions/package-tree.html">bio.singa.chemistry.features.reactions</a>, </li>
<li><a href="bio/singa/chemistry/features/smiles/package-tree.html">bio.singa.chemistry.features.smiles</a>, </li>
<li><a href="bio/singa/chemistry/features/structure2d/package-tree.html">bio.singa.chemistry.features.structure2d</a>, </li>
<li><a href="bio/singa/chemistry/model/package-tree.html">bio.singa.chemistry.model</a>, </li>
<li><a href="bio/singa/chemistry/model/elements/package-tree.html">bio.singa.chemistry.model.elements</a>, </li>
<li><a href="bio/singa/core/events/package-tree.html">bio.singa.core.events</a>, </li>
<li><a href="bio/singa/core/parser/package-tree.html">bio.singa.core.parser</a>, </li>
<li><a href="bio/singa/core/utility/package-tree.html">bio.singa.core.utility</a>, </li>
<li><a href="bio/singa/features/exceptions/package-tree.html">bio.singa.features.exceptions</a>, </li>
<li><a href="bio/singa/features/formatter/package-tree.html">bio.singa.features.formatter</a>, </li>
<li><a href="bio/singa/features/identifiers/package-tree.html">bio.singa.features.identifiers</a>, </li>
<li><a href="bio/singa/features/identifiers/model/package-tree.html">bio.singa.features.identifiers.model</a>, </li>
<li><a href="bio/singa/features/model/package-tree.html">bio.singa.features.model</a>, </li>
<li><a href="bio/singa/features/parameters/package-tree.html">bio.singa.features.parameters</a>, </li>
<li><a href="bio/singa/features/quantities/package-tree.html">bio.singa.features.quantities</a>, </li>
<li><a href="bio/singa/features/units/package-tree.html">bio.singa.features.units</a>, </li>
<li><a href="bio/singa/javafx/geometry/package-tree.html">bio.singa.javafx.geometry</a>, </li>
<li><a href="bio/singa/javafx/renderer/package-tree.html">bio.singa.javafx.renderer</a>, </li>
<li><a href="bio/singa/javafx/renderer/colors/package-tree.html">bio.singa.javafx.renderer.colors</a>, </li>
<li><a href="bio/singa/javafx/renderer/graphs/package-tree.html">bio.singa.javafx.renderer.graphs</a>, </li>
<li><a href="bio/singa/javafx/renderer/layouts/package-tree.html">bio.singa.javafx.renderer.layouts</a>, </li>
<li><a href="bio/singa/javafx/renderer/layouts/force/package-tree.html">bio.singa.javafx.renderer.layouts.force</a>, </li>
<li><a href="bio/singa/javafx/renderer/layouts/relax/package-tree.html">bio.singa.javafx.renderer.layouts.relax</a>, </li>
<li><a href="bio/singa/javafx/renderer/molecules/package-tree.html">bio.singa.javafx.renderer.molecules</a>, </li>
<li><a href="bio/singa/javafx/viewer/package-tree.html">bio.singa.javafx.viewer</a>, </li>
<li><a href="bio/singa/javafx/voronoi/package-tree.html">bio.singa.javafx.voronoi</a>, </li>
<li><a href="bio/singa/mathematics/algorithms/clustering/package-tree.html">bio.singa.mathematics.algorithms.clustering</a>, </li>
<li><a href="bio/singa/mathematics/algorithms/geometry/package-tree.html">bio.singa.mathematics.algorithms.geometry</a>, </li>
<li><a href="bio/singa/mathematics/algorithms/graphs/package-tree.html">bio.singa.mathematics.algorithms.graphs</a>, </li>
<li><a href="bio/singa/mathematics/algorithms/graphs/isomorphism/package-tree.html">bio.singa.mathematics.algorithms.graphs.isomorphism</a>, </li>
<li><a href="bio/singa/mathematics/algorithms/matrix/package-tree.html">bio.singa.mathematics.algorithms.matrix</a>, </li>
<li><a href="bio/singa/mathematics/algorithms/optimization/package-tree.html">bio.singa.mathematics.algorithms.optimization</a>, </li>
<li><a href="bio/singa/mathematics/algorithms/primes/package-tree.html">bio.singa.mathematics.algorithms.primes</a>, </li>
<li><a href="bio/singa/mathematics/algorithms/superimposition/package-tree.html">bio.singa.mathematics.algorithms.superimposition</a>, </li>
<li><a href="bio/singa/mathematics/algorithms/topology/package-tree.html">bio.singa.mathematics.algorithms.topology</a>, </li>
<li><a href="bio/singa/mathematics/algorithms/voronoi/package-tree.html">bio.singa.mathematics.algorithms.voronoi</a>, </li>
<li><a href="bio/singa/mathematics/algorithms/voronoi/model/package-tree.html">bio.singa.mathematics.algorithms.voronoi.model</a>, </li>
<li><a href="bio/singa/mathematics/combinatorics/package-tree.html">bio.singa.mathematics.combinatorics</a>, </li>
<li><a href="bio/singa/mathematics/concepts/package-tree.html">bio.singa.mathematics.concepts</a>, </li>
<li><a href="bio/singa/mathematics/exceptions/package-tree.html">bio.singa.mathematics.exceptions</a>, </li>
<li><a href="bio/singa/mathematics/functions/package-tree.html">bio.singa.mathematics.functions</a>, </li>
<li><a href="bio/singa/mathematics/geometry/bodies/package-tree.html">bio.singa.mathematics.geometry.bodies</a>, </li>
<li><a href="bio/singa/mathematics/geometry/edges/package-tree.html">bio.singa.mathematics.geometry.edges</a>, </li>
<li><a href="bio/singa/mathematics/geometry/faces/package-tree.html">bio.singa.mathematics.geometry.faces</a>, </li>
<li><a href="bio/singa/mathematics/geometry/model/package-tree.html">bio.singa.mathematics.geometry.model</a>, </li>
<li><a href="bio/singa/mathematics/graphs/grid/package-tree.html">bio.singa.mathematics.graphs.grid</a>, </li>
<li><a href="bio/singa/mathematics/graphs/model/package-tree.html">bio.singa.mathematics.graphs.model</a>, </li>
<li><a href="bio/singa/mathematics/graphs/parser/package-tree.html">bio.singa.mathematics.graphs.parser</a>, </li>
<li><a href="bio/singa/mathematics/graphs/trees/package-tree.html">bio.singa.mathematics.graphs.trees</a>, </li>
<li><a href="bio/singa/mathematics/intervals/package-tree.html">bio.singa.mathematics.intervals</a>, </li>
<li><a href="bio/singa/mathematics/matrices/package-tree.html">bio.singa.mathematics.matrices</a>, </li>
<li><a href="bio/singa/mathematics/metrics/implementations/package-tree.html">bio.singa.mathematics.metrics.implementations</a>, </li>
<li><a href="bio/singa/mathematics/metrics/model/package-tree.html">bio.singa.mathematics.metrics.model</a>, </li>
<li><a href="bio/singa/mathematics/quaternions/package-tree.html">bio.singa.mathematics.quaternions</a>, </li>
<li><a href="bio/singa/mathematics/similarities/package-tree.html">bio.singa.mathematics.similarities</a>, </li>
<li><a href="bio/singa/mathematics/topology/grids/cube/package-tree.html">bio.singa.mathematics.topology.grids.cube</a>, </li>
<li><a href="bio/singa/mathematics/topology/grids/hexagonal/package-tree.html">bio.singa.mathematics.topology.grids.hexagonal</a>, </li>
<li><a href="bio/singa/mathematics/topology/grids/rectangular/package-tree.html">bio.singa.mathematics.topology.grids.rectangular</a>, </li>
<li><a href="bio/singa/mathematics/topology/model/package-tree.html">bio.singa.mathematics.topology.model</a>, </li>
<li><a href="bio/singa/mathematics/transformations/implementations/package-tree.html">bio.singa.mathematics.transformations.implementations</a>, </li>
<li><a href="bio/singa/mathematics/transformations/model/package-tree.html">bio.singa.mathematics.transformations.model</a>, </li>
<li><a href="bio/singa/mathematics/vectors/package-tree.html">bio.singa.mathematics.vectors</a>, </li>
<li><a href="bio/singa/sequence/algorithms/alignment/package-tree.html">bio.singa.sequence.algorithms.alignment</a>, </li>
<li><a href="bio/singa/sequence/model/package-tree.html">bio.singa.sequence.model</a>, </li>
<li><a href="bio/singa/sequence/model/interfaces/package-tree.html">bio.singa.sequence.model.interfaces</a>, </li>
<li><a href="bio/singa/sequence/parser/ena/package-tree.html">bio.singa.sequence.parser.ena</a>, </li>
<li><a href="bio/singa/simulation/entities/package-tree.html">bio.singa.simulation.entities</a>, </li>
<li><a href="bio/singa/simulation/events/package-tree.html">bio.singa.simulation.events</a>, </li>
<li><a href="bio/singa/simulation/exceptions/package-tree.html">bio.singa.simulation.exceptions</a>, </li>
<li><a href="bio/singa/simulation/export/package-tree.html">bio.singa.simulation.export</a>, </li>
<li><a href="bio/singa/simulation/export/features/package-tree.html">bio.singa.simulation.export.features</a>, </li>
<li><a href="bio/singa/simulation/export/format/package-tree.html">bio.singa.simulation.export.format</a>, </li>
<li><a href="bio/singa/simulation/export/modules/package-tree.html">bio.singa.simulation.export.modules</a>, </li>
<li><a href="bio/singa/simulation/export/reactiongraph/package-tree.html">bio.singa.simulation.export.reactiongraph</a>, </li>
<li><a href="bio/singa/simulation/features/package-tree.html">bio.singa.simulation.features</a>, </li>
<li><a href="bio/singa/simulation/features/model/package-tree.html">bio.singa.simulation.features.model</a>, </li>
<li><a href="bio/singa/simulation/model/agents/linelike/package-tree.html">bio.singa.simulation.model.agents.linelike</a>, </li>
<li><a href="bio/singa/simulation/model/agents/organelles/package-tree.html">bio.singa.simulation.model.agents.organelles</a>, </li>
<li><a href="bio/singa/simulation/model/agents/pointlike/package-tree.html">bio.singa.simulation.model.agents.pointlike</a>, </li>
<li><a href="bio/singa/simulation/model/agents/surfacelike/package-tree.html">bio.singa.simulation.model.agents.surfacelike</a>, </li>
<li><a href="bio/singa/simulation/model/agents/volumelike/package-tree.html">bio.singa.simulation.model.agents.volumelike</a>, </li>
<li><a href="bio/singa/simulation/model/concentrations/package-tree.html">bio.singa.simulation.model.concentrations</a>, </li>
<li><a href="bio/singa/simulation/model/graphs/package-tree.html">bio.singa.simulation.model.graphs</a>, </li>
<li><a href="bio/singa/simulation/model/modules/package-tree.html">bio.singa.simulation.model.modules</a>, </li>
<li><a href="bio/singa/simulation/model/modules/concentration/package-tree.html">bio.singa.simulation.model.modules.concentration</a>, </li>
<li><a href="bio/singa/simulation/model/modules/concentration/functions/package-tree.html">bio.singa.simulation.model.modules.concentration.functions</a>, </li>
<li><a href="bio/singa/simulation/model/modules/concentration/imlementations/reactions/package-tree.html">bio.singa.simulation.model.modules.concentration.imlementations.reactions</a>, </li>
<li><a href="bio/singa/simulation/model/modules/concentration/imlementations/reactions/behaviors/deltas/package-tree.html">bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.deltas</a>, </li>
<li><a href="bio/singa/simulation/model/modules/concentration/imlementations/reactions/behaviors/kineticlaws/package-tree.html">bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws</a>, </li>
<li><a href="bio/singa/simulation/model/modules/concentration/imlementations/reactions/behaviors/reactants/package-tree.html">bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.reactants</a>, </li>
<li><a href="bio/singa/simulation/model/modules/concentration/imlementations/transport/package-tree.html">bio.singa.simulation.model.modules.concentration.imlementations.transport</a>, </li>
<li><a href="bio/singa/simulation/model/modules/concentration/scope/package-tree.html">bio.singa.simulation.model.modules.concentration.scope</a>, </li>
<li><a href="bio/singa/simulation/model/modules/concentration/specifity/package-tree.html">bio.singa.simulation.model.modules.concentration.specifity</a>, </li>
<li><a href="bio/singa/simulation/model/modules/displacement/package-tree.html">bio.singa.simulation.model.modules.displacement</a>, </li>
<li><a href="bio/singa/simulation/model/modules/displacement/implementations/package-tree.html">bio.singa.simulation.model.modules.displacement.implementations</a>, </li>
<li><a href="bio/singa/simulation/model/modules/qualitative/package-tree.html">bio.singa.simulation.model.modules.qualitative</a>, </li>
<li><a href="bio/singa/simulation/model/modules/qualitative/implementations/package-tree.html">bio.singa.simulation.model.modules.qualitative.implementations</a>, </li>
<li><a href="bio/singa/simulation/model/parameters/package-tree.html">bio.singa.simulation.model.parameters</a>, </li>
<li><a href="bio/singa/simulation/model/rules/package-tree.html">bio.singa.simulation.model.rules</a>, </li>
<li><a href="bio/singa/simulation/model/sections/package-tree.html">bio.singa.simulation.model.sections</a>, </li>
<li><a href="bio/singa/simulation/model/simulation/package-tree.html">bio.singa.simulation.model.simulation</a>, </li>
<li><a href="bio/singa/simulation/model/simulation/error/package-tree.html">bio.singa.simulation.model.simulation.error</a>, </li>
<li><a href="bio/singa/simulation/reactions/package-tree.html">bio.singa.simulation.reactions</a>, </li>
<li><a href="bio/singa/simulation/reactions/conditions/package-tree.html">bio.singa.simulation.reactions.conditions</a>, </li>
<li><a href="bio/singa/simulation/reactions/modifications/package-tree.html">bio.singa.simulation.reactions.modifications</a>, </li>
<li><a href="bio/singa/simulation/reactions/reactors/package-tree.html">bio.singa.simulation.reactions.reactors</a>, </li>
<li><a href="bio/singa/simulation/trajectories/package-tree.html">bio.singa.simulation.trajectories</a>, </li>
<li><a href="bio/singa/simulation/trajectories/errors/package-tree.html">bio.singa.simulation.trajectories.errors</a>, </li>
<li><a href="bio/singa/simulation/trajectories/flat/package-tree.html">bio.singa.simulation.trajectories.flat</a>, </li>
<li><a href="bio/singa/simulation/trajectories/nested/package-tree.html">bio.singa.simulation.trajectories.nested</a>, </li>
<li><a href="bio/singa/structure/algorithms/fragmentation/package-tree.html">bio.singa.structure.algorithms.fragmentation</a>, </li>
<li><a href="bio/singa/structure/algorithms/gyration/package-tree.html">bio.singa.structure.algorithms.gyration</a>, </li>
<li><a href="bio/singa/structure/algorithms/molecules/package-tree.html">bio.singa.structure.algorithms.molecules</a>, </li>
<li><a href="bio/singa/structure/algorithms/superimposition/package-tree.html">bio.singa.structure.algorithms.superimposition</a>, </li>
<li><a href="bio/singa/structure/algorithms/superimposition/affinity/package-tree.html">bio.singa.structure.algorithms.superimposition.affinity</a>, </li>
<li><a href="bio/singa/structure/algorithms/superimposition/consensus/package-tree.html">bio.singa.structure.algorithms.superimposition.consensus</a>, </li>
<li><a href="bio/singa/structure/algorithms/superimposition/fit3d/package-tree.html">bio.singa.structure.algorithms.superimposition.fit3d</a>, </li>
<li><a href="bio/singa/structure/algorithms/superimposition/fit3d/representations/package-tree.html">bio.singa.structure.algorithms.superimposition.fit3d.representations</a>, </li>
<li><a href="bio/singa/structure/algorithms/superimposition/fit3d/statistics/package-tree.html">bio.singa.structure.algorithms.superimposition.fit3d.statistics</a>, </li>
<li><a href="bio/singa/structure/algorithms/superimposition/scores/package-tree.html">bio.singa.structure.algorithms.superimposition.scores</a>, </li>
<li><a href="bio/singa/structure/features/package-tree.html">bio.singa.structure.features</a>, </li>
<li><a href="bio/singa/structure/model/families/package-tree.html">bio.singa.structure.model.families</a>, </li>
<li><a href="bio/singa/structure/model/interfaces/package-tree.html">bio.singa.structure.model.interfaces</a>, </li>
<li><a href="bio/singa/structure/model/mmtf/package-tree.html">bio.singa.structure.model.mmtf</a>, </li>
<li><a href="bio/singa/structure/model/molecules/package-tree.html">bio.singa.structure.model.molecules</a>, </li>
<li><a href="bio/singa/structure/model/oak/package-tree.html">bio.singa.structure.model.oak</a>, </li>
<li><a href="bio/singa/structure/parser/mol/package-tree.html">bio.singa.structure.parser.mol</a>, </li>
<li><a href="bio/singa/structure/parser/ncbi/package-tree.html">bio.singa.structure.parser.ncbi</a>, </li>
<li><a href="bio/singa/structure/parser/pdb/ligands/package-tree.html">bio.singa.structure.parser.pdb.ligands</a>, </li>
<li><a href="bio/singa/structure/parser/pdb/rest/package-tree.html">bio.singa.structure.parser.pdb.rest</a>, </li>
<li><a href="bio/singa/structure/parser/pdb/rest/cluster/package-tree.html">bio.singa.structure.parser.pdb.rest.cluster</a>, </li>
<li><a href="bio/singa/structure/parser/pdb/structures/package-tree.html">bio.singa.structure.parser.pdb.structures</a>, </li>
<li><a href="bio/singa/structure/parser/pdb/structures/iterators/package-tree.html">bio.singa.structure.parser.pdb.structures.iterators</a>, </li>
<li><a href="bio/singa/structure/parser/pdb/structures/iterators/converters/package-tree.html">bio.singa.structure.parser.pdb.structures.iterators.converters</a>, </li>
<li><a href="bio/singa/structure/parser/pdb/structures/iterators/sources/package-tree.html">bio.singa.structure.parser.pdb.structures.iterators.sources</a>, </li>
<li><a href="bio/singa/structure/parser/pdb/structures/tokens/package-tree.html">bio.singa.structure.parser.pdb.structures.tokens</a>, </li>
<li><a href="bio/singa/structure/parser/pfam/package-tree.html">bio.singa.structure.parser.pfam</a>, </li>
<li><a href="bio/singa/structure/parser/pfam/tokens/package-tree.html">bio.singa.structure.parser.pfam.tokens</a>, </li>
<li><a href="bio/singa/structure/parser/plip/package-tree.html">bio.singa.structure.parser.plip</a>, </li>
<li><a href="bio/singa/structure/parser/sifts/package-tree.html">bio.singa.structure.parser.sifts</a>, </li>
<li><a href="uk/co/cogitolearning/cogpar/package-tree.html">uk.co.cogitolearning.cogpar</a></li>
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<div class="contentContainer">
<section role="region">
<h2 title="Class Hierarchy">Class Hierarchy</h2>
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<li class="circle">bio.singa.features.quantities.<a href="bio/singa/features/quantities/ConcentrationDiffusivity.html" title="class in bio.singa.features.quantities"><span class="typeNameLink">ConcentrationDiffusivity</span></a></li>
<li class="circle">bio.singa.features.quantities.<a href="bio/singa/features/quantities/MembraneDiffusivity.html" title="class in bio.singa.features.quantities"><span class="typeNameLink">MembraneDiffusivity</span></a></li>
<li class="circle">bio.singa.chemistry.features.permeability.<a href="bio/singa/chemistry/features/permeability/MembranePermeability.html" title="class in bio.singa.chemistry.features.permeability"><span class="typeNameLink">MembranePermeability</span></a> (implements javax.measure.Quantity<Q>)</li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/MotorMovementVelocity.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">MotorMovementVelocity</span></a></li>
<li class="circle">bio.singa.chemistry.features.permeability.<a href="bio/singa/chemistry/features/permeability/OsmoticPermeability.html" title="class in bio.singa.chemistry.features.permeability"><span class="typeNameLink">OsmoticPermeability</span></a> (implements javax.measure.Quantity<Q>)</li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/PitFormationRate.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">PitFormationRate</span></a></li>
<li class="circle">bio.singa.features.quantities.<a href="bio/singa/features/quantities/PixelDiffusivity.html" title="class in bio.singa.features.quantities"><span class="typeNameLink">PixelDiffusivity</span></a>
<ul>
<li class="circle">bio.singa.chemistry.features.diffusivity.<a href="bio/singa/chemistry/features/diffusivity/ModifiedDiffusivity.html" title="class in bio.singa.chemistry.features.diffusivity"><span class="typeNameLink">ModifiedDiffusivity</span></a></li>
<li class="circle">bio.singa.chemistry.features.diffusivity.<a href="bio/singa/chemistry/features/diffusivity/OriginalDiffusivity.html" title="class in bio.singa.chemistry.features.diffusivity"><span class="typeNameLink">OriginalDiffusivity</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/RateConstant.html" title="class in bio.singa.chemistry.features.reactions"><span class="typeNameLink">RateConstant</span></a><ReactionRateType>
<ul>
<li class="circle">bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/FirstOrderRateConstant.html" title="class in bio.singa.chemistry.features.reactions"><span class="typeNameLink">FirstOrderRateConstant</span></a>
<ul>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/CargoAdditionRate.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">CargoAdditionRate</span></a> (implements bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/ForwardsRateConstant.html" title="interface in bio.singa.chemistry.features.reactions">ForwardsRateConstant</a><ReactionRateType>)</li>
<li class="circle">bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/FirstOrderBackwardsRateConstant.html" title="class in bio.singa.chemistry.features.reactions"><span class="typeNameLink">FirstOrderBackwardsRateConstant</span></a> (implements bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/BackwardsRateConstant.html" title="interface in bio.singa.chemistry.features.reactions">BackwardsRateConstant</a><ReactionRateType>)</li>
<li class="circle">bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/FirstOrderForwardsRateConstant.html" title="class in bio.singa.chemistry.features.reactions"><span class="typeNameLink">FirstOrderForwardsRateConstant</span></a> (implements bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/ForwardsRateConstant.html" title="interface in bio.singa.chemistry.features.reactions">ForwardsRateConstant</a><ReactionRateType>)</li>
<li class="circle">bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/TurnoverNumber.html" title="class in bio.singa.chemistry.features.reactions"><span class="typeNameLink">TurnoverNumber</span></a> (implements bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/ForwardsRateConstant.html" title="interface in bio.singa.chemistry.features.reactions">ForwardsRateConstant</a><ReactionRateType>)</li>
</ul>
</li>
<li class="circle">bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/SecondOrderRateConstant.html" title="class in bio.singa.chemistry.features.reactions"><span class="typeNameLink">SecondOrderRateConstant</span></a>
<ul>
<li class="circle">bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/SecondOrderBackwardsRateConstant.html" title="class in bio.singa.chemistry.features.reactions"><span class="typeNameLink">SecondOrderBackwardsRateConstant</span></a> (implements bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/BackwardsRateConstant.html" title="interface in bio.singa.chemistry.features.reactions">BackwardsRateConstant</a><ReactionRateType>)</li>
<li class="circle">bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/SecondOrderForwardsRateConstant.html" title="class in bio.singa.chemistry.features.reactions"><span class="typeNameLink">SecondOrderForwardsRateConstant</span></a> (implements bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/ForwardsRateConstant.html" title="interface in bio.singa.chemistry.features.reactions">ForwardsRateConstant</a><ReactionRateType>)</li>
</ul>
</li>
<li class="circle">bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/ZeroOrderRateConstant.html" title="class in bio.singa.chemistry.features.reactions"><span class="typeNameLink">ZeroOrderRateConstant</span></a>
<ul>
<li class="circle">bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/ZeroOrderBackwardsRateConstant.html" title="class in bio.singa.chemistry.features.reactions"><span class="typeNameLink">ZeroOrderBackwardsRateConstant</span></a> (implements bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/BackwardsRateConstant.html" title="interface in bio.singa.chemistry.features.reactions">BackwardsRateConstant</a><ReactionRateType>)</li>
<li class="circle">bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/ZeroOrderForwardsRateConstant.html" title="class in bio.singa.chemistry.features.reactions"><span class="typeNameLink">ZeroOrderForwardsRateConstant</span></a> (implements bio.singa.chemistry.features.reactions.<a href="bio/singa/chemistry/features/reactions/ForwardsRateConstant.html" title="interface in bio.singa.chemistry.features.reactions">ForwardsRateConstant</a><ReactionRateType>)</li>
</ul>
</li>
</ul>
</li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/VesicleRadius.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">VesicleRadius</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.features.model.<a href="bio/singa/features/model/QualitativeFeature.html" title="class in bio.singa.features.model"><span class="typeNameLink">QualitativeFeature</span></a><FeatureContent>
<ul>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/AffectedSection.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">AffectedSection</span></a></li>
<li class="circle">bio.singa.simulation.features.model.<a href="bio/singa/simulation/features/model/EntityFeature.html" title="class in bio.singa.simulation.features.model"><span class="typeNameLink">EntityFeature</span></a>
<ul>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/AttachedMotor.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">AttachedMotor</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/BoostMediatingEntity.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">BoostMediatingEntity</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/Cargo.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">Cargo</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/Transporter.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">Transporter</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/InitialConcentrations.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">InitialConcentrations</span></a></li>
<li class="circle">bio.singa.chemistry.features.logp.<a href="bio/singa/chemistry/features/logp/LogP.html" title="class in bio.singa.chemistry.features.logp"><span class="typeNameLink">LogP</span></a></li>
<li class="circle">bio.singa.features.quantities.<a href="bio/singa/features/quantities/MolarMass.html" title="class in bio.singa.features.quantities"><span class="typeNameLink">MolarMass</span></a> (implements javax.measure.Quantity<Q>)</li>
<li class="circle">bio.singa.features.quantities.<a href="bio/singa/features/quantities/MolarVolume.html" title="class in bio.singa.features.quantities"><span class="typeNameLink">MolarVolume</span></a> (implements javax.measure.Quantity<Q>)</li>
<li class="circle">bio.singa.simulation.features.model.<a href="bio/singa/simulation/features/model/MultiEntityFeature.html" title="class in bio.singa.simulation.features.model"><span class="typeNameLink">MultiEntityFeature</span></a>
<ul>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/Cargoes.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">Cargoes</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/MatchingQSnares.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">MatchingQSnares</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/MatchingRSnares.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">MatchingRSnares</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/PrimaryCargoes.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">PrimaryCargoes</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/ScalingEntities.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">ScalingEntities</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/Solutes.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">Solutes</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.simulation.features.model.<a href="bio/singa/simulation/features/model/MultiStringFeature.html" title="class in bio.singa.simulation.features.model"><span class="typeNameLink">MultiStringFeature</span></a>
<ul>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/BlackListVesicleStates.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">BlackListVesicleStates</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/WhiteListVesicleStates.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">WhiteListVesicleStates</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.simulation.features.model.<a href="bio/singa/simulation/features/model/RegionFeature.html" title="class in bio.singa.simulation.features.model"><span class="typeNameLink">RegionFeature</span></a>
<ul>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/AffectedRegion.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">AffectedRegion</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/ContainmentRegion.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">ContainmentRegion</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.chemistry.features.databases.sequencevariants.<a href="bio/singa/chemistry/features/databases/sequencevariants/SequenceVariants.html" title="class in bio.singa.chemistry.features.databases.sequencevariants"><span class="typeNameLink">SequenceVariants</span></a></li>
<li class="circle">bio.singa.chemistry.features.smiles.<a href="bio/singa/chemistry/features/smiles/Smiles.html" title="class in bio.singa.chemistry.features.smiles"><span class="typeNameLink">Smiles</span></a></li>
<li class="circle">bio.singa.features.model.<a href="bio/singa/features/model/StringFeature.html" title="class in bio.singa.features.model"><span class="typeNameLink">StringFeature</span></a>
<ul>
<li class="circle">bio.singa.features.identifiers.model.<a href="bio/singa/features/identifiers/model/AbstractIdentifier.html" title="class in bio.singa.features.identifiers.model"><span class="typeNameLink">AbstractIdentifier</span></a> (implements bio.singa.features.identifiers.model.<a href="bio/singa/features/identifiers/model/Identifier.html" title="interface in bio.singa.features.identifiers.model">Identifier</a>)
<ul>
<li class="circle">bio.singa.features.identifiers.<a href="bio/singa/features/identifiers/ChEBIIdentifier.html" title="class in bio.singa.features.identifiers"><span class="typeNameLink">ChEBIIdentifier</span></a></li>
<li class="circle">bio.singa.features.identifiers.<a href="bio/singa/features/identifiers/DigitalObjectIdentifier.html" title="class in bio.singa.features.identifiers"><span class="typeNameLink">DigitalObjectIdentifier</span></a></li>
<li class="circle">bio.singa.features.identifiers.<a href="bio/singa/features/identifiers/ECNumber.html" title="class in bio.singa.features.identifiers"><span class="typeNameLink">ECNumber</span></a></li>
<li class="circle">bio.singa.features.identifiers.<a href="bio/singa/features/identifiers/ENAAccessionNumber.html" title="class in bio.singa.features.identifiers"><span class="typeNameLink">ENAAccessionNumber</span></a></li>
<li class="circle">bio.singa.features.identifiers.<a href="bio/singa/features/identifiers/GoTerm.html" title="class in bio.singa.features.identifiers"><span class="typeNameLink">GoTerm</span></a></li>
<li class="circle">bio.singa.features.identifiers.<a href="bio/singa/features/identifiers/InChIKey.html" title="class in bio.singa.features.identifiers"><span class="typeNameLink">InChIKey</span></a></li>
<li class="circle">bio.singa.features.identifiers.<a href="bio/singa/features/identifiers/NCBITaxonomyIdentifier.html" title="class in bio.singa.features.identifiers"><span class="typeNameLink">NCBITaxonomyIdentifier</span></a></li>
<li class="circle">bio.singa.features.identifiers.<a href="bio/singa/features/identifiers/PDBIdentifier.html" title="class in bio.singa.features.identifiers"><span class="typeNameLink">PDBIdentifier</span></a></li>
<li class="circle">bio.singa.features.identifiers.<a href="bio/singa/features/identifiers/PDBLigandIdentifier.html" title="class in bio.singa.features.identifiers"><span class="typeNameLink">PDBLigandIdentifier</span></a></li>
<li class="circle">bio.singa.features.identifiers.<a href="bio/singa/features/identifiers/PfamIdentifier.html" title="class in bio.singa.features.identifiers"><span class="typeNameLink">PfamIdentifier</span></a></li>
<li class="circle">bio.singa.features.identifiers.<a href="bio/singa/features/identifiers/PubChemIdentifier.html" title="class in bio.singa.features.identifiers"><span class="typeNameLink">PubChemIdentifier</span></a></li>
<li class="circle">bio.singa.features.identifiers.<a href="bio/singa/features/identifiers/RefSeqIdentifier.html" title="class in bio.singa.features.identifiers"><span class="typeNameLink">RefSeqIdentifier</span></a></li>
<li class="circle">bio.singa.features.identifiers.<a href="bio/singa/features/identifiers/SimpleStringIdentifier.html" title="class in bio.singa.features.identifiers"><span class="typeNameLink">SimpleStringIdentifier</span></a></li>
<li class="circle">bio.singa.features.identifiers.<a href="bio/singa/features/identifiers/UniProtEntryName.html" title="class in bio.singa.features.identifiers"><span class="typeNameLink">UniProtEntryName</span></a></li>
<li class="circle">bio.singa.features.identifiers.<a href="bio/singa/features/identifiers/UniProtIdentifier.html" title="class in bio.singa.features.identifiers"><span class="typeNameLink">UniProtIdentifier</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/AppliedVesicleState.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">AppliedVesicleState</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/AttachedFilament.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">AttachedFilament</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/MotorPullDirection.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">MotorPullDirection</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/RequiredVesicleState.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">RequiredVesicleState</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.chemistry.features.structure2d.<a href="bio/singa/chemistry/features/structure2d/Structure2D.html" title="class in bio.singa.chemistry.features.structure2d"><span class="typeNameLink">Structure2D</span></a></li>
<li class="circle">bio.singa.structure.features.<a href="bio/singa/structure/features/Structure3D.html" title="class in bio.singa.structure.features"><span class="typeNameLink">Structure3D</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">bio.singa.features.model.<a href="bio/singa/features/model/AbstractFeature.Builder.html" title="class in bio.singa.features.model"><span class="typeNameLink">AbstractFeature.Builder</span></a><FeatureContent,​TopLevelType,​BuilderType>
<ul>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/ActinBoostVelocity.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">ActinBoostVelocity.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/AffectedRegion.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">AffectedRegion.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/AffectedSection.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">AffectedSection.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/AppliedVesicleState.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">AppliedVesicleState.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/AttachedFilament.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">AttachedFilament.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/AttachedMotor.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">AttachedMotor.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/AttachmentDistance.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">AttachmentDistance.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/BlackListVesicleStates.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">BlackListVesicleStates.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/BoostMediatingEntity.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">BoostMediatingEntity.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/Cargo.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">Cargo.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/CargoAdditionRate.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">CargoAdditionRate.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/Cargoes.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">Cargoes.Builder</span></a></li>
<li class="circle">bio.singa.features.quantities.<a href="bio/singa/features/quantities/ConcentrationDiffusivity.Builder.html" title="class in bio.singa.features.quantities"><span class="typeNameLink">ConcentrationDiffusivity.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/ContainmentRegion.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">ContainmentRegion.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/EndocytosisCheckpointConcentration.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">EndocytosisCheckpointConcentration.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/EndocytosisCheckpointTime.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">EndocytosisCheckpointTime.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/FusionTime.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">FusionTime.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/InitialConcentrations.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">InitialConcentrations.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/MatchingQSnares.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">MatchingQSnares.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/MatchingRSnares.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">MatchingRSnares.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/MaturationTime.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">MaturationTime.Builder</span></a></li>
<li class="circle">bio.singa.features.quantities.<a href="bio/singa/features/quantities/MembraneDiffusivity.Builder.html" title="class in bio.singa.features.quantities"><span class="typeNameLink">MembraneDiffusivity.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/MembraneTickness.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">MembraneTickness.Builder</span></a></li>
<li class="circle">bio.singa.chemistry.features.diffusivity.<a href="bio/singa/chemistry/features/diffusivity/ModifiedDiffusivity.Builder.html" title="class in bio.singa.chemistry.features.diffusivity"><span class="typeNameLink">ModifiedDiffusivity.Builder</span></a></li>
<li class="circle">bio.singa.features.quantities.<a href="bio/singa/features/quantities/MolarMass.Builder.html" title="class in bio.singa.features.quantities"><span class="typeNameLink">MolarMass.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/MotorMovementVelocity.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">MotorMovementVelocity.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/MotorPullDirection.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">MotorPullDirection.Builder</span></a></li>
<li class="circle">bio.singa.chemistry.features.diffusivity.<a href="bio/singa/chemistry/features/diffusivity/OriginalDiffusivity.Builder.html" title="class in bio.singa.chemistry.features.diffusivity"><span class="typeNameLink">OriginalDiffusivity.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/PitFormationRate.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">PitFormationRate.Builder</span></a></li>
<li class="circle">bio.singa.features.quantities.<a href="bio/singa/features/quantities/PixelDiffusivity.Builder.html" title="class in bio.singa.features.quantities"><span class="typeNameLink">PixelDiffusivity.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/PrimaryCargoes.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">PrimaryCargoes.Builder</span></a></li>
<li class="circle">bio.singa.chemistry.features.radius.<a href="bio/singa/chemistry/features/radius/Radius.Builder.html" title="class in bio.singa.chemistry.features.radius"><span class="typeNameLink">Radius.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/Ratio.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">Ratio.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/RequiredVesicleState.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">RequiredVesicleState.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/ScalingEntities.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">ScalingEntities.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/SNAREFusionPairs.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">SNAREFusionPairs.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/Solutes.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">Solutes.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/Transporter.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">Transporter.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/VesicleRadius.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">VesicleRadius.Builder</span></a></li>
<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/WhiteListVesicleStates.Builder.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">WhiteListVesicleStates.Builder</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.simulation.reactions.reactors.<a href="bio/singa/simulation/reactions/reactors/AbstractGraphComplexReactor.html" title="class in bio.singa.simulation.reactions.reactors"><span class="typeNameLink">AbstractGraphComplexReactor</span></a> (implements bio.singa.simulation.reactions.reactors.<a href="bio/singa/simulation/reactions/reactors/ComplexReactor.html" title="interface in bio.singa.simulation.reactions.reactors">ComplexReactor</a>)
<ul>
<li class="circle">bio.singa.simulation.reactions.reactors.<a href="bio/singa/simulation/reactions/reactors/OneToOneReactor.html" title="class in bio.singa.simulation.reactions.reactors"><span class="typeNameLink">OneToOneReactor</span></a></li>
<li class="circle">bio.singa.simulation.reactions.reactors.<a href="bio/singa/simulation/reactions/reactors/OneToTwoReactor.html" title="class in bio.singa.simulation.reactions.reactors"><span class="typeNameLink">OneToTwoReactor</span></a></li>
<li class="circle">bio.singa.simulation.reactions.reactors.<a href="bio/singa/simulation/reactions/reactors/TwoToOneReactor.html" title="class in bio.singa.simulation.reactions.reactors"><span class="typeNameLink">TwoToOneReactor</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.mathematics.graphs.grid.<a href="bio/singa/mathematics/graphs/grid/AbstractGridGraph.html" title="class in bio.singa.mathematics.graphs.grid"><span class="typeNameLink">AbstractGridGraph</span></a><NodeType,​EdgeType,​VectorType> (implements bio.singa.mathematics.graphs.model.<a href="bio/singa/mathematics/graphs/model/Graph.html" title="interface in bio.singa.mathematics.graphs.model">Graph</a><NodeType,​EdgeType,​IdentifierType>)
<ul>
<li class="circle">bio.singa.simulation.model.graphs.<a href="bio/singa/simulation/model/graphs/AutomatonGraph.html" title="class in bio.singa.simulation.model.graphs"><span class="typeNameLink">AutomatonGraph</span></a></li>
<li class="circle">bio.singa.mathematics.graphs.grid.<a href="bio/singa/mathematics/graphs/grid/GridGraph.html" title="class in bio.singa.mathematics.graphs.grid"><span class="typeNameLink">GridGraph</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws.<a href="bio/singa/simulation/model/modules/concentration/imlementations/reactions/behaviors/kineticlaws/AbstractKineticLaw.html" title="class in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws"><span class="typeNameLink">AbstractKineticLaw</span></a> (implements bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws.<a href="bio/singa/simulation/model/modules/concentration/imlementations/reactions/behaviors/kineticlaws/KineticLaw.html" title="interface in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws">KineticLaw</a>)
<ul>
<li class="circle">bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws.<a href="bio/singa/simulation/model/modules/concentration/imlementations/reactions/behaviors/kineticlaws/IrreversibleKineticLaw.html" title="class in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws"><span class="typeNameLink">IrreversibleKineticLaw</span></a></li>
<li class="circle">bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws.<a href="bio/singa/simulation/model/modules/concentration/imlementations/reactions/behaviors/kineticlaws/MichaelisMentenKineticLaw.html" title="class in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws"><span class="typeNameLink">MichaelisMentenKineticLaw</span></a></li>
<li class="circle">bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws.<a href="bio/singa/simulation/model/modules/concentration/imlementations/reactions/behaviors/kineticlaws/ReversibleKineticLaw.html" title="class in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws"><span class="typeNameLink">ReversibleKineticLaw</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.mathematics.graphs.model.<a href="bio/singa/mathematics/graphs/model/AbstractMapGraph.html" title="class in bio.singa.mathematics.graphs.model"><span class="typeNameLink">AbstractMapGraph</span></a><NodeType,​EdgeType,​VectorType,​IdentifierType> (implements bio.singa.mathematics.graphs.model.<a href="bio/singa/mathematics/graphs/model/Graph.html" title="interface in bio.singa.mathematics.graphs.model">Graph</a><NodeType,​EdgeType,​IdentifierType>)
<ul>
<li class="circle">bio.singa.simulation.entities.<a href="bio/singa/simulation/entities/ComplexEntity.html" title="class in bio.singa.simulation.entities"><span class="typeNameLink">ComplexEntity</span></a> (implements bio.singa.simulation.entities.<a href="bio/singa/simulation/entities/ChemicalEntity.html" title="interface in bio.singa.simulation.entities">ChemicalEntity</a>)</li>
<li class="circle">bio.singa.mathematics.graphs.model.<a href="bio/singa/mathematics/graphs/model/DirectedGraph.html" title="class in bio.singa.mathematics.graphs.model"><span class="typeNameLink">DirectedGraph</span></a><NodeType></li>
<li class="circle">bio.singa.mathematics.graphs.model.<a href="bio/singa/mathematics/graphs/model/DirectedWeightedGraph.html" title="class in bio.singa.mathematics.graphs.model"><span class="typeNameLink">DirectedWeightedGraph</span></a><NodeType,​EdgeType>
<ul>
<li class="circle">bio.singa.sequence.algorithms.alignment.<a href="bio/singa/sequence/algorithms/alignment/DynamicProgrammingGraph.html" title="class in bio.singa.sequence.algorithms.alignment"><span class="typeNameLink">DynamicProgrammingGraph</span></a></li>
<li class="circle">bio.singa.simulation.export.reactiongraph.<a href="bio/singa/simulation/export/reactiongraph/ReactionGraph.html" title="class in bio.singa.simulation.export.reactiongraph"><span class="typeNameLink">ReactionGraph</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.mathematics.graphs.model.<a href="bio/singa/mathematics/graphs/model/GenericGraph.html" title="class in bio.singa.mathematics.graphs.model"><span class="typeNameLink">GenericGraph</span></a><ContentType></li>
<li class="circle">bio.singa.chemistry.model.<a href="bio/singa/chemistry/model/MoleculeGraph.html" title="class in bio.singa.chemistry.model"><span class="typeNameLink">MoleculeGraph</span></a></li>
<li class="circle">bio.singa.mathematics.graphs.model.<a href="bio/singa/mathematics/graphs/model/UndirectedGraph.html" title="class in bio.singa.mathematics.graphs.model"><span class="typeNameLink">UndirectedGraph</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.mathematics.graphs.model.<a href="bio/singa/mathematics/graphs/model/AbstractNode.html" title="class in bio.singa.mathematics.graphs.model"><span class="typeNameLink">AbstractNode</span></a><NodeType,​VectorType,​IdentifierType> (implements bio.singa.mathematics.graphs.model.<a href="bio/singa/mathematics/graphs/model/Node.html" title="interface in bio.singa.mathematics.graphs.model">Node</a><NodeType,​VectorType,​IdentifierType>)
<ul>
<li class="circle">bio.singa.simulation.model.graphs.<a href="bio/singa/simulation/model/graphs/AutomatonNode.html" title="class in bio.singa.simulation.model.graphs"><span class="typeNameLink">AutomatonNode</span></a> (implements bio.singa.simulation.model.simulation.<a href="bio/singa/simulation/model/simulation/Updatable.html" title="interface in bio.singa.simulation.model.simulation">Updatable</a>)</li>
<li class="circle">bio.singa.sequence.algorithms.alignment.<a href="bio/singa/sequence/algorithms/alignment/DynamicProgrammingNode.html" title="class in bio.singa.sequence.algorithms.alignment"><span class="typeNameLink">DynamicProgrammingNode</span></a></li>
<li class="circle">bio.singa.mathematics.graphs.model.<a href="bio/singa/mathematics/graphs/model/GenericNode.html" title="class in bio.singa.mathematics.graphs.model"><span class="typeNameLink">GenericNode</span></a><ContentType></li>
<li class="circle">bio.singa.simulation.entities.<a href="bio/singa/simulation/entities/GraphComplexNode.html" title="class in bio.singa.simulation.entities"><span class="typeNameLink">GraphComplexNode</span></a></li>
<li class="circle">bio.singa.mathematics.graphs.grid.<a href="bio/singa/mathematics/graphs/grid/GridNode.html" title="class in bio.singa.mathematics.graphs.grid"><span class="typeNameLink">GridNode</span></a></li>
<li class="circle">bio.singa.chemistry.model.<a href="bio/singa/chemistry/model/MoleculeAtom.html" title="class in bio.singa.chemistry.model"><span class="typeNameLink">MoleculeAtom</span></a></li>
<li class="circle">bio.singa.simulation.export.reactiongraph.<a href="bio/singa/simulation/export/reactiongraph/ReactionGraphNode.html" title="class in bio.singa.simulation.export.reactiongraph"><span class="typeNameLink">ReactionGraphNode</span></a></li>
<li class="circle">bio.singa.mathematics.graphs.model.<a href="bio/singa/mathematics/graphs/model/RegularNode.html" title="class in bio.singa.mathematics.graphs.model"><span class="typeNameLink">RegularNode</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.core.parser.<a href="bio/singa/core/parser/AbstractParser.html" title="class in bio.singa.core.parser"><span class="typeNameLink">AbstractParser</span></a><ResultType> (implements bio.singa.core.parser.<a href="bio/singa/core/parser/Parser.html" title="interface in bio.singa.core.parser">Parser</a><ResultType>)
<ul>
<li class="circle">bio.singa.core.parser.<a href="bio/singa/core/parser/AbstractHTMLParser.html" title="class in bio.singa.core.parser"><span class="typeNameLink">AbstractHTMLParser</span></a><ResultType>
<ul>
<li class="circle">bio.singa.core.parser.<a href="bio/singa/core/parser/AbstractUniProtIdentifierMappingParser.html" title="class in bio.singa.core.parser"><span class="typeNameLink">AbstractUniProtIdentifierMappingParser</span></a><ResultType>
<ul>
<li class="circle">bio.singa.structure.parser.ncbi.<a href="bio/singa/structure/parser/ncbi/RefSeqUniProtMapper.html" title="class in bio.singa.structure.parser.ncbi"><span class="typeNameLink">RefSeqUniProtMapper</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.core.parser.<a href="bio/singa/core/parser/AbstractXMLParser.html" title="class in bio.singa.core.parser"><span class="typeNameLink">AbstractXMLParser</span></a><ResultType>
<ul>
<li class="circle">bio.singa.chemistry.features.databases.chebi.<a href="bio/singa/chemistry/features/databases/chebi/ChEBIParserService.html" title="class in bio.singa.chemistry.features.databases.chebi"><span class="typeNameLink">ChEBIParserService</span></a></li>
<li class="circle">bio.singa.sequence.parser.ena.<a href="bio/singa/sequence/parser/ena/ENAParserService.html" title="class in bio.singa.sequence.parser.ena"><span class="typeNameLink">ENAParserService</span></a></li>
<li class="circle">bio.singa.mathematics.graphs.parser.<a href="bio/singa/mathematics/graphs/parser/GraphMLParserService.html" title="class in bio.singa.mathematics.graphs.parser"><span class="typeNameLink">GraphMLParserService</span></a></li>
<li class="circle">bio.singa.structure.parser.plip.<a href="bio/singa/structure/parser/plip/PlipParser.html" title="class in bio.singa.structure.parser.plip"><span class="typeNameLink">PlipParser</span></a></li>
<li class="circle">bio.singa.chemistry.features.databases.pubchem.<a href="bio/singa/chemistry/features/databases/pubchem/PubChemParserService.html" title="class in bio.singa.chemistry.features.databases.pubchem"><span class="typeNameLink">PubChemParserService</span></a></li>
<li class="circle">bio.singa.chemistry.features.databases.uniprot.<a href="bio/singa/chemistry/features/databases/uniprot/UniProtParserService.html" title="class in bio.singa.chemistry.features.databases.uniprot"><span class="typeNameLink">UniProtParserService</span></a></li>
<li class="circle">bio.singa.structure.parser.sifts.<a href="bio/singa/structure/parser/sifts/UniProtResidueMapParser.html" title="class in bio.singa.structure.parser.sifts"><span class="typeNameLink">UniProtResidueMapParser</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.chemistry.features.databases.chebi.<a href="bio/singa/chemistry/features/databases/chebi/ChEBIImageService.html" title="class in bio.singa.chemistry.features.databases.chebi"><span class="typeNameLink">ChEBIImageService</span></a></li>
<li class="circle">bio.singa.structure.parser.sifts.<a href="bio/singa/structure/parser/sifts/PDBEnzymeMapper.html" title="class in bio.singa.structure.parser.sifts"><span class="typeNameLink">PDBEnzymeMapper</span></a></li>
<li class="circle">bio.singa.structure.parser.sifts.<a href="bio/singa/structure/parser/sifts/PDBPfamMapper.html" title="class in bio.singa.structure.parser.sifts"><span class="typeNameLink">PDBPfamMapper</span></a></li>
<li class="circle">bio.singa.structure.parser.pdb.rest.<a href="bio/singa/structure/parser/pdb/rest/PDBRestEndpoint.html" title="class in bio.singa.structure.parser.pdb.rest"><span class="typeNameLink">PDBRestEndpoint</span></a><ResultType>
<ul>
<li class="circle">bio.singa.structure.parser.pdb.rest.cluster.<a href="bio/singa/structure/parser/pdb/rest/cluster/PDBSequenceCluster.html" title="class in bio.singa.structure.parser.pdb.rest.cluster"><span class="typeNameLink">PDBSequenceCluster</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.structure.parser.sifts.<a href="bio/singa/structure/parser/sifts/PDBUniProtMapper.html" title="class in bio.singa.structure.parser.sifts"><span class="typeNameLink">PDBUniProtMapper</span></a></li>
<li class="circle">bio.singa.chemistry.features.databases.unichem.<a href="bio/singa/chemistry/features/databases/unichem/UniChemParser.html" title="class in bio.singa.chemistry.features.databases.unichem"><span class="typeNameLink">UniChemParser</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">tech.units.indriya.AbstractQuantity<Q> (implements tech.units.indriya.ComparableQuantity<Q>, tec.uom.lib.common.function.UnitSupplier<Q>, tec.uom.lib.common.function.ValueSupplier<T>)
<ul>
<li class="circle">bio.singa.features.quantities.<a href="bio/singa/features/quantities/MolarConcentration.html" title="class in bio.singa.features.quantities"><span class="typeNameLink">MolarConcentration</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.structure.algorithms.superimposition.fit3d.representations.<a href="bio/singa/structure/algorithms/superimposition/fit3d/representations/AbstractRepresentationScheme.html" title="class in bio.singa.structure.algorithms.superimposition.fit3d.representations"><span class="typeNameLink">AbstractRepresentationScheme</span></a> (implements bio.singa.structure.algorithms.superimposition.fit3d.representations.<a href="bio/singa/structure/algorithms/superimposition/fit3d/representations/RepresentationScheme.html" title="interface in bio.singa.structure.algorithms.superimposition.fit3d.representations">RepresentationScheme</a>)
<ul>
<li class="circle">bio.singa.structure.algorithms.superimposition.fit3d.representations.<a href="bio/singa/structure/algorithms/superimposition/fit3d/representations/AlphaCarbonRepresentationScheme.html" title="class in bio.singa.structure.algorithms.superimposition.fit3d.representations"><span class="typeNameLink">AlphaCarbonRepresentationScheme</span></a></li>
<li class="circle">bio.singa.structure.algorithms.superimposition.fit3d.representations.<a href="bio/singa/structure/algorithms/superimposition/fit3d/representations/BetaCarbonRepresentationScheme.html" title="class in bio.singa.structure.algorithms.superimposition.fit3d.representations"><span class="typeNameLink">BetaCarbonRepresentationScheme</span></a></li>
<li class="circle">bio.singa.structure.algorithms.superimposition.fit3d.representations.<a href="bio/singa/structure/algorithms/superimposition/fit3d/representations/CentroidRepresentationScheme.html" title="class in bio.singa.structure.algorithms.superimposition.fit3d.representations"><span class="typeNameLink">CentroidRepresentationScheme</span></a></li>
<li class="circle">bio.singa.structure.algorithms.superimposition.fit3d.representations.<a href="bio/singa/structure/algorithms/superimposition/fit3d/representations/LastHeavySidechainRepresentationScheme.html" title="class in bio.singa.structure.algorithms.superimposition.fit3d.representations"><span class="typeNameLink">LastHeavySidechainRepresentationScheme</span></a></li>
<li class="circle">bio.singa.structure.algorithms.superimposition.fit3d.representations.<a href="bio/singa/structure/algorithms/superimposition/fit3d/representations/SideChainCentroidRepresentationScheme.html" title="class in bio.singa.structure.algorithms.superimposition.fit3d.representations"><span class="typeNameLink">SideChainCentroidRepresentationScheme</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.sequence.model.<a href="bio/singa/sequence/model/AbstractSequence.html" title="class in bio.singa.sequence.model"><span class="typeNameLink">AbstractSequence</span></a><FamilyType> (implements bio.singa.features.model.<a href="bio/singa/features/model/Featureable.html" title="interface in bio.singa.features.model">Featureable</a>, bio.singa.sequence.model.interfaces.<a href="bio/singa/sequence/model/interfaces/Sequence.html" title="interface in bio.singa.sequence.model.interfaces">Sequence</a><FamilyType>)
<ul>
<li class="circle">bio.singa.sequence.model.<a href="bio/singa/sequence/model/NucleotideSequence.html" title="class in bio.singa.sequence.model"><span class="typeNameLink">NucleotideSequence</span></a></li>
<li class="circle">bio.singa.sequence.model.<a href="bio/singa/sequence/model/ProteinSequence.html" title="class in bio.singa.sequence.model"><span class="typeNameLink">ProteinSequence</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.structure.parser.pdb.structures.iterators.sources.<a href="bio/singa/structure/parser/pdb/structures/iterators/sources/AbstractSourceIterator.html" title="class in bio.singa.structure.parser.pdb.structures.iterators.sources"><span class="typeNameLink">AbstractSourceIterator</span></a><SourceContent,​ContentType> (implements bio.singa.structure.parser.pdb.structures.iterators.sources.<a href="bio/singa/structure/parser/pdb/structures/iterators/sources/SourceIterator.html" title="interface in bio.singa.structure.parser.pdb.structures.iterators.sources">SourceIterator</a><SourceContent,​ContentType>)
<ul>
<li class="circle">bio.singa.structure.parser.pdb.structures.iterators.sources.<a href="bio/singa/structure/parser/pdb/structures/iterators/sources/LocalSourceIterator.html" title="class in bio.singa.structure.parser.pdb.structures.iterators.sources"><span class="typeNameLink">LocalSourceIterator</span></a><SourceContent></li>
<li class="circle">bio.singa.structure.parser.pdb.structures.iterators.sources.<a href="bio/singa/structure/parser/pdb/structures/iterators/sources/RemoteMmtfSourceIterator.html" title="class in bio.singa.structure.parser.pdb.structures.iterators.sources"><span class="typeNameLink">RemoteMmtfSourceIterator</span></a></li>
<li class="circle">bio.singa.structure.parser.pdb.structures.iterators.sources.<a href="bio/singa/structure/parser/pdb/structures/iterators/sources/RemotePDBSourceIterator.html" title="class in bio.singa.structure.parser.pdb.structures.iterators.sources"><span class="typeNameLink">RemotePDBSourceIterator</span></a></li>
</ul>
</li>
<li class="circle">bio.singa.structure.parser.pdb.structures.iterators.<a href="bio/singa/structure/parser/pdb/structures/iterators/AbstractStructureIterator.html" title="class in bio.singa.structure.parser.pdb.structures.iterators"><span class="typeNameLink">AbstractStructureIterator</span></a><SourceType,​TargetType> (implements bio.singa.structure.parser.pdb.structures.iterators.<a href="bio/singa/structure/parser/pdb/structures/iterators/StructureIterator.html" title="interface in bio.singa.structure.parser.pdb.structures.iterators">StructureIterator</a>)
<ul>
<li class="circle">bio.singa.structure.parser.pdb.structures.iterators.<a href="bio/singa/structure/parser/pdb/structures/iterators/LocalStructureIterator.html" title="class in bio.singa.structure.parser.pdb.structures.iterators"><span class="typeNameLink">LocalStructureIterator</span></a><SourceType></li>
<li class="circle">bio.singa.structure.parser.pdb.structures.iterators.<a href="bio/singa/structure/parser/pdb/structures/iterators/MmtfStructureIterator.html" title="class in bio.singa.structure.parser.pdb.structures.iterators"><span class="typeNameLink">MmtfStructureIterator</span></a><SourceType></li>
<li class="circle">bio.singa.structure.parser.pdb.structures.iterators.<a href="bio/singa/structure/parser/pdb/structures/iterators/PDBStructureIterator.html" title="class in bio.singa.structure.parser.pdb.structures.iterators"><span class="typeNameLink">PDBStructureIterator</span></a><SourceType></li>
</ul>
</li>
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<ul>
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<li class="circle">bio.singa.simulation.model.modules.concentration.<a href="bio/singa/simulation/model/modules/concentration/ConcentrationDeltaManager.html" title="class in bio.singa.simulation.model.modules.concentration"><span class="typeNameLink">ConcentrationDeltaManager</span></a></li>
<li class="circle">bio.singa.simulation.model.sections.<a href="bio/singa/simulation/model/sections/ConcentrationPool.html" title="class in bio.singa.simulation.model.sections"><span class="typeNameLink">ConcentrationPool</span></a></li>
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<li class="circle">bio.singa.structure.algorithms.superimposition.consensus.<a href="bio/singa/structure/algorithms/superimposition/consensus/ConsensusContainer.html" title="class in bio.singa.structure.algorithms.superimposition.consensus"><span class="typeNameLink">ConsensusContainer</span></a></li>
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<li class="circle">bio.singa.mathematics.algorithms.geometry.<a href="bio/singa/mathematics/algorithms/geometry/ConvexHull.html" title="class in bio.singa.mathematics.algorithms.geometry"><span class="typeNameLink">ConvexHull</span></a></li>
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<li class="circle">bio.singa.mathematics.topology.grids.cube.<a href="bio/singa/mathematics/topology/grids/cube/CubeCoordinate.html" title="class in bio.singa.mathematics.topology.grids.cube"><span class="typeNameLink">CubeCoordinate</span></a></li>
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<li class="circle">bio.singa.mathematics.functions.<a href="bio/singa/mathematics/functions/DecayFunctions.html" title="class in bio.singa.mathematics.functions"><span class="typeNameLink">DecayFunctions</span></a></li>
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<li class="circle">bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws.<a href="bio/singa/simulation/model/modules/concentration/imlementations/reactions/behaviors/kineticlaws/DynamicKineticLaw.html" title="class in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws"><span class="typeNameLink">DynamicKineticLaw</span></a> (implements bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws.<a href="bio/singa/simulation/model/modules/concentration/imlementations/reactions/behaviors/kineticlaws/KineticLaw.html" title="interface in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws">KineticLaw</a>)</li>
<li class="circle">bio.singa.mathematics.algorithms.matrix.<a href="bio/singa/mathematics/algorithms/matrix/EigenvalueDecomposition.html" title="class in bio.singa.mathematics.algorithms.matrix"><span class="typeNameLink">EigenvalueDecomposition</span></a></li>
<li class="circle">bio.singa.chemistry.model.elements.<a href="bio/singa/chemistry/model/elements/ElectronConfiguration.html" title="class in bio.singa.chemistry.model.elements"><span class="typeNameLink">ElectronConfiguration</span></a></li>
<li class="circle">bio.singa.chemistry.model.elements.<a href="bio/singa/chemistry/model/elements/Element.html" title="class in bio.singa.chemistry.model.elements"><span class="typeNameLink">Element</span></a></li>
<li class="circle">bio.singa.chemistry.model.elements.<a href="bio/singa/chemistry/model/elements/ElementProvider.html" title="class in bio.singa.chemistry.model.elements"><span class="typeNameLink">ElementProvider</span></a></li>
<li class="circle">bio.singa.sequence.parser.ena.<a href="bio/singa/sequence/parser/ena/ENAContentHandler.html" title="class in bio.singa.sequence.parser.ena"><span class="typeNameLink">ENAContentHandler</span></a> (implements org.xml.sax.ContentHandler)</li>
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<li class="circle">bio.singa.simulation.model.simulation.error.<a href="bio/singa/simulation/model/simulation/error/ErrorManager.html" title="class in bio.singa.simulation.model.simulation.error"><span class="typeNameLink">ErrorManager</span></a></li>
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<li class="circle">bio.singa.features.model.<a href="bio/singa/features/model/Evidence.html" title="class in bio.singa.features.model"><span class="typeNameLink">Evidence</span></a></li>
<li class="circle">uk.co.cogitolearning.cogpar.<a href="uk/co/cogitolearning/cogpar/ExponentiationExpressionNode.html" title="class in uk.co.cogitolearning.cogpar"><span class="typeNameLink">ExponentiationExpressionNode</span></a> (implements uk.co.cogitolearning.cogpar.<a href="uk/co/cogitolearning/cogpar/ExpressionNode.html" title="interface in uk.co.cogitolearning.cogpar">ExpressionNode</a>)</li>
<li class="circle">uk.co.cogitolearning.cogpar.<a href="uk/co/cogitolearning/cogpar/ExpressionParser.html" title="class in uk.co.cogitolearning.cogpar"><span class="typeNameLink">ExpressionParser</span></a></li>
<li class="circle">bio.singa.mathematics.matrices.<a href="bio/singa/mathematics/matrices/FastMatrices.html" title="class in bio.singa.mathematics.matrices"><span class="typeNameLink">FastMatrices</span></a></li>
<li class="circle">bio.singa.features.model.<a href="bio/singa/features/model/FeatureContainer.html" title="class in bio.singa.features.model"><span class="typeNameLink">FeatureContainer</span></a>
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<li class="circle">bio.singa.chemistry.features.<a href="bio/singa/chemistry/features/ChemistryFeatureContainer.html" title="class in bio.singa.chemistry.features"><span class="typeNameLink">ChemistryFeatureContainer</span></a></li>
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<li class="circle">bio.singa.simulation.model.parameters.<a href="bio/singa/simulation/model/parameters/FeatureManager.html" title="class in bio.singa.simulation.model.parameters"><span class="typeNameLink">FeatureManager</span></a> (implements bio.singa.features.model.<a href="bio/singa/features/model/Featureable.html" title="interface in bio.singa.features.model">Featureable</a>)</li>
<li class="circle">bio.singa.features.model.<a href="bio/singa/features/model/FeatureProvider.html" title="class in bio.singa.features.model"><span class="typeNameLink">FeatureProvider</span></a><FeatureType>
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<li class="circle">bio.singa.chemistry.features.diffusivity.<a href="bio/singa/chemistry/features/diffusivity/DiffusivityProvider.html" title="class in bio.singa.chemistry.features.diffusivity"><span class="typeNameLink">DiffusivityProvider</span></a></li>
<li class="circle">bio.singa.chemistry.features.identifiers.<a href="bio/singa/chemistry/features/identifiers/InChIKeyProvider.html" title="class in bio.singa.chemistry.features.identifiers"><span class="typeNameLink">InChIKeyProvider</span></a></li>
<li class="circle">bio.singa.chemistry.features.logp.<a href="bio/singa/chemistry/features/logp/LogPProvider.html" title="class in bio.singa.chemistry.features.logp"><span class="typeNameLink">LogPProvider</span></a></li>
<li class="circle">bio.singa.chemistry.features.molarmass.<a href="bio/singa/chemistry/features/molarmass/MolarMassProvider.html" title="class in bio.singa.chemistry.features.molarmass"><span class="typeNameLink">MolarMassProvider</span></a></li>
<li class="circle">bio.singa.structure.features.<a href="bio/singa/structure/features/MolarVolumePredictor.html" title="class in bio.singa.structure.features"><span class="typeNameLink">MolarVolumePredictor</span></a></li>
<li class="circle">bio.singa.chemistry.features.identifiers.<a href="bio/singa/chemistry/features/identifiers/PDBLigandIdentiferProvider.html" title="class in bio.singa.chemistry.features.identifiers"><span class="typeNameLink">PDBLigandIdentiferProvider</span></a></li>
<li class="circle">bio.singa.chemistry.features.identifiers.<a href="bio/singa/chemistry/features/identifiers/PubChemIdentifierProvider.html" title="class in bio.singa.chemistry.features.identifiers"><span class="typeNameLink">PubChemIdentifierProvider</span></a></li>
<li class="circle">bio.singa.chemistry.features.identifiers.<a href="bio/singa/chemistry/features/identifiers/PubChemToChEBI.html" title="class in bio.singa.chemistry.features.identifiers"><span class="typeNameLink">PubChemToChEBI</span></a></li>
<li class="circle">bio.singa.chemistry.features.identifiers.<a href="bio/singa/chemistry/features/identifiers/PubChemToInChIKey.html" title="class in bio.singa.chemistry.features.identifiers"><span class="typeNameLink">PubChemToInChIKey</span></a></li>
<li class="circle">bio.singa.chemistry.features.smiles.<a href="bio/singa/chemistry/features/smiles/SmilesProvider.html" title="class in bio.singa.chemistry.features.smiles"><span class="typeNameLink">SmilesProvider</span></a></li>
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<li class="circle">bio.singa.simulation.features.<a href="bio/singa/simulation/features/FeatureRandomizer.html" title="class in bio.singa.simulation.features"><span class="typeNameLink">FeatureRandomizer</span></a></li>
<li class="circle">bio.singa.features.model.<a href="bio/singa/features/model/FeatureRegistry.html" title="class in bio.singa.features.model"><span class="typeNameLink">FeatureRegistry</span></a></li>
<li class="circle">bio.singa.simulation.export.features.<a href="bio/singa/simulation/export/features/FeatureTable.html" title="class in bio.singa.simulation.export.features"><span class="typeNameLink">FeatureTable</span></a></li>
<li class="circle">bio.singa.simulation.export.features.<a href="bio/singa/simulation/export/features/FeatureTableRow.html" title="class in bio.singa.simulation.export.features"><span class="typeNameLink">FeatureTableRow</span></a></li>
<li class="circle">bio.singa.simulation.model.modules.concentration.<a href="bio/singa/simulation/model/modules/concentration/FieldSupplier.html" title="class in bio.singa.simulation.model.modules.concentration"><span class="typeNameLink">FieldSupplier</span></a></li>
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<li class="circle">bio.singa.structure.algorithms.superimposition.fit3d.<a href="bio/singa/structure/algorithms/superimposition/fit3d/Fit3DAlignment.html" title="class in bio.singa.structure.algorithms.superimposition.fit3d"><span class="typeNameLink">Fit3DAlignment</span></a> (implements bio.singa.structure.algorithms.superimposition.fit3d.<a href="bio/singa/structure/algorithms/superimposition/fit3d/Fit3D.html" title="interface in bio.singa.structure.algorithms.superimposition.fit3d">Fit3D</a>)</li>
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<li class="circle">bio.singa.structure.algorithms.superimposition.fit3d.<a href="bio/singa/structure/algorithms/superimposition/fit3d/Fit3DBuilder.html" title="class in bio.singa.structure.algorithms.superimposition.fit3d"><span class="typeNameLink">Fit3DBuilder</span></a></li>
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<li class="circle">bio.singa.mathematics.graphs.model.<a href="bio/singa/mathematics/graphs/model/IdentifierSupplier.html" title="class in bio.singa.mathematics.graphs.model"><span class="typeNameLink">IdentifierSupplier</span></a></li>
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<li class="circle">bio.singa.structure.parser.plip.<a href="bio/singa/structure/parser/plip/Interaction.html" title="class in bio.singa.structure.parser.plip"><span class="typeNameLink">Interaction</span></a>
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<li class="circle">bio.singa.structure.parser.plip.<a href="bio/singa/structure/parser/plip/MetalComplex.html" title="class in bio.singa.structure.parser.plip"><span class="typeNameLink">MetalComplex</span></a></li>
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<li class="circle">bio.singa.structure.parser.plip.<a href="bio/singa/structure/parser/plip/InteractionContainer.html" title="class in bio.singa.structure.parser.plip"><span class="typeNameLink">InteractionContainer</span></a></li>
<li class="circle">bio.singa.mathematics.algorithms.graphs.isomorphism.<a href="bio/singa/mathematics/algorithms/graphs/isomorphism/IsomorphismCondition.html" title="class in bio.singa.mathematics.algorithms.graphs.isomorphism"><span class="typeNameLink">IsomorphismCondition</span></a></li>
<li class="circle">bio.singa.simulation.reactions.conditions.<a href="bio/singa/simulation/reactions/conditions/IsOnlyBoundAt.html" title="class in bio.singa.simulation.reactions.conditions"><span class="typeNameLink">IsOnlyBoundAt</span></a> (implements bio.singa.simulation.reactions.conditions.<a href="bio/singa/simulation/reactions/conditions/CandidateCondition.html" title="interface in bio.singa.simulation.reactions.conditions">CandidateCondition</a>)</li>
<li class="circle">bio.singa.mathematics.metrics.implementations.<a href="bio/singa/mathematics/metrics/implementations/JaccardMetric.html" title="class in bio.singa.mathematics.metrics.implementations"><span class="typeNameLink">JaccardMetric</span></a><Type> (implements bio.singa.mathematics.metrics.model.<a href="bio/singa/mathematics/metrics/model/Metric.html" title="interface in bio.singa.mathematics.metrics.model">Metric</a><MetrizableType>)</li>
<li class="circle">bio.singa.mathematics.algorithms.optimization.<a href="bio/singa/mathematics/algorithms/optimization/KuhnMunkres.html" title="class in bio.singa.mathematics.algorithms.optimization"><span class="typeNameLink">KuhnMunkres</span></a><DataType></li>
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<li class="circle">bio.singa.javafx.renderer.layouts.<a href="bio/singa/javafx/renderer/layouts/LayoutBuilder.html" title="class in bio.singa.javafx.renderer.layouts"><span class="typeNameLink">LayoutBuilder</span></a></li>
<li class="circle">bio.singa.mathematics.graphs.trees.<a href="bio/singa/mathematics/graphs/trees/LeafFirstBinaryTreeIterator.html" title="class in bio.singa.mathematics.graphs.trees"><span class="typeNameLink">LeafFirstBinaryTreeIterator</span></a><T> (implements java.util.Iterator<E>)</li>
<li class="circle">bio.singa.features.identifiers.<a href="bio/singa/features/identifiers/LeafIdentifier.html" title="class in bio.singa.features.identifiers"><span class="typeNameLink">LeafIdentifier</span></a> (implements java.lang.Comparable<T>)</li>
<li class="circle">bio.singa.features.identifiers.<a href="bio/singa/features/identifiers/LeafIdentifiers.html" title="class in bio.singa.features.identifiers"><span class="typeNameLink">LeafIdentifiers</span></a></li>
<li class="circle">bio.singa.structure.parser.pdb.structures.tokens.<a href="bio/singa/structure/parser/pdb/structures/tokens/LeafSkeleton.html" title="class in bio.singa.structure.parser.pdb.structures.tokens"><span class="typeNameLink">LeafSkeleton</span></a></li>
<li class="circle">bio.singa.structure.model.oak.<a href="bio/singa/structure/model/oak/LeafSubstructureFactory.html" title="class in bio.singa.structure.model.oak"><span class="typeNameLink">LeafSubstructureFactory</span></a></li>
<li class="circle">bio.singa.structure.model.families.<a href="bio/singa/structure/model/families/LigandFamily.html" title="class in bio.singa.structure.model.families"><span class="typeNameLink">LigandFamily</span></a> (implements bio.singa.structure.model.families.<a href="bio/singa/structure/model/families/StructuralFamily.html" title="interface in bio.singa.structure.model.families">StructuralFamily</a><FamilyType>)</li>
<li class="circle">bio.singa.structure.parser.pdb.ligands.<a href="bio/singa/structure/parser/pdb/ligands/LigandParserService.html" title="class in bio.singa.structure.parser.pdb.ligands"><span class="typeNameLink">LigandParserService</span></a></li>
<li class="circle">bio.singa.mathematics.geometry.edges.<a href="bio/singa/mathematics/geometry/edges/Line.html" title="class in bio.singa.mathematics.geometry.edges"><span class="typeNameLink">Line</span></a>
<ul>
<li class="circle">bio.singa.mathematics.geometry.edges.<a href="bio/singa/mathematics/geometry/edges/SimpleLineSegment.html" title="class in bio.singa.mathematics.geometry.edges"><span class="typeNameLink">SimpleLineSegment</span></a> (implements bio.singa.mathematics.geometry.edges.<a href="bio/singa/mathematics/geometry/edges/LineSegment.html" title="interface in bio.singa.mathematics.geometry.edges">LineSegment</a>)</li>
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<li class="circle">bio.singa.simulation.model.agents.linelike.<a href="bio/singa/simulation/model/agents/linelike/LineLikeAgent.html" title="class in bio.singa.simulation.model.agents.linelike"><span class="typeNameLink">LineLikeAgent</span></a></li>
<li class="circle">bio.singa.simulation.model.agents.linelike.<a href="bio/singa/simulation/model/agents/linelike/LineLikeAgentLayer.html" title="class in bio.singa.simulation.model.agents.linelike"><span class="typeNameLink">LineLikeAgentLayer</span></a></li>
<li class="circle">bio.singa.simulation.model.agents.linelike.<a href="bio/singa/simulation/model/agents/linelike/LineLikeAgentTemplate.html" title="class in bio.singa.simulation.model.agents.linelike"><span class="typeNameLink">LineLikeAgentTemplate</span></a></li>
<li class="circle">bio.singa.core.utility.<a href="bio/singa/core/utility/ListHelper.html" title="class in bio.singa.core.utility"><span class="typeNameLink">ListHelper</span></a></li>
<li class="circle">bio.singa.structure.parser.pdb.structures.<a href="bio/singa/structure/parser/pdb/structures/LocalCIFRepository.html" title="class in bio.singa.structure.parser.pdb.structures"><span class="typeNameLink">LocalCIFRepository</span></a></li>
<li class="circle">bio.singa.structure.parser.pdb.structures.<a href="bio/singa/structure/parser/pdb/structures/LocalPDBRepository.html" title="class in bio.singa.structure.parser.pdb.structures"><span class="typeNameLink">LocalPDBRepository</span></a></li>
<li class="circle">bio.singa.structure.parser.pdb.structures.iterators.converters.<a href="bio/singa/structure/parser/pdb/structures/iterators/converters/LocalPDBToPathConverter.html" title="class in bio.singa.structure.parser.pdb.structures.iterators.converters"><span class="typeNameLink">LocalPDBToPathConverter</span></a> (implements bio.singa.structure.parser.pdb.structures.iterators.converters.<a href="bio/singa/structure/parser/pdb/structures/iterators/converters/ContentConverter.html" title="interface in bio.singa.structure.parser.pdb.structures.iterators.converters">ContentConverter</a><ContentType,​ConversionType>)</li>
<li class="circle">bio.singa.mathematics.algorithms.matrix.<a href="bio/singa/mathematics/algorithms/matrix/LUDecomposition.html" title="class in bio.singa.mathematics.algorithms.matrix"><span class="typeNameLink">LUDecomposition</span></a></li>
<li class="circle">bio.singa.javafx.viewer.<a href="bio/singa/javafx/viewer/MaterialProvider.html" title="class in bio.singa.javafx.viewer"><span class="typeNameLink">MaterialProvider</span></a></li>
<li class="circle">bio.singa.mathematics.matrices.<a href="bio/singa/mathematics/matrices/Matrices.html" title="class in bio.singa.mathematics.matrices"><span class="typeNameLink">Matrices</span></a></li>
<li class="circle">bio.singa.mathematics.transformations.implementations.<a href="bio/singa/mathematics/transformations/implementations/MatrixTransformations.html" title="class in bio.singa.mathematics.transformations.implementations"><span class="typeNameLink">MatrixTransformations</span></a></li>
<li class="circle">bio.singa.mathematics.algorithms.graphs.<a href="bio/singa/mathematics/algorithms/graphs/MaximumCommonSubgraphFinder.html" title="class in bio.singa.mathematics.algorithms.graphs"><span class="typeNameLink">MaximumCommonSubgraphFinder</span></a><NodeType,​EdgeType,​VectorType,​IdentifierType,​GraphType></li>
<li class="circle">bio.singa.simulation.model.agents.surfacelike.<a href="bio/singa/simulation/model/agents/surfacelike/Membrane.html" title="class in bio.singa.simulation.model.agents.surfacelike"><span class="typeNameLink">Membrane</span></a></li>
<li class="circle">bio.singa.simulation.model.modules.concentration.imlementations.transport.<a href="bio/singa/simulation/model/modules/concentration/imlementations/transport/MembraneDiffusion.MembraneDiffusionBuilder.html" title="class in bio.singa.simulation.model.modules.concentration.imlementations.transport"><span class="typeNameLink">MembraneDiffusion.MembraneDiffusionBuilder</span></a> (implements bio.singa.simulation.model.modules.concentration.imlementations.transport.<a href="bio/singa/simulation/model/modules/concentration/imlementations/transport/MembraneDiffusion.BuildStep.html" title="interface in bio.singa.simulation.model.modules.concentration.imlementations.transport">MembraneDiffusion.BuildStep</a>, bio.singa.simulation.model.modules.concentration.imlementations.transport.<a href="bio/singa/simulation/model/modules/concentration/imlementations/transport/MembraneDiffusion.CargoStep.html" title="interface in bio.singa.simulation.model.modules.concentration.imlementations.transport">MembraneDiffusion.CargoStep</a>, bio.singa.simulation.model.modules.concentration.<a href="bio/singa/simulation/model/modules/concentration/ModuleBuilder.html" title="interface in bio.singa.simulation.model.modules.concentration">ModuleBuilder</a><ModuleType>)</li>
<li class="circle">bio.singa.simulation.model.agents.surfacelike.<a href="bio/singa/simulation/model/agents/surfacelike/MembraneLayer.html" title="class in bio.singa.simulation.model.agents.surfacelike"><span class="typeNameLink">MembraneLayer</span></a></li>
<li class="circle">bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.deltas.<a href="bio/singa/simulation/model/modules/concentration/imlementations/reactions/behaviors/deltas/MembraneRestrictedBehavior.html" title="class in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.deltas"><span class="typeNameLink">MembraneRestrictedBehavior</span></a> (implements bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.deltas.<a href="bio/singa/simulation/model/modules/concentration/imlementations/reactions/behaviors/deltas/DeltaBehavior.html" title="interface in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.deltas">DeltaBehavior</a>)</li>
<li class="circle">bio.singa.simulation.model.agents.surfacelike.<a href="bio/singa/simulation/model/agents/surfacelike/MembraneSegment.html" title="class in bio.singa.simulation.model.agents.surfacelike"><span class="typeNameLink">MembraneSegment</span></a> (implements bio.singa.mathematics.geometry.edges.<a href="bio/singa/mathematics/geometry/edges/LineSegment.html" title="interface in bio.singa.mathematics.geometry.edges">LineSegment</a>)</li>
<li class="circle">bio.singa.simulation.model.agents.surfacelike.<a href="bio/singa/simulation/model/agents/surfacelike/MembraneTracer.html" title="class in bio.singa.simulation.model.agents.surfacelike"><span class="typeNameLink">MembraneTracer</span></a></li>
<li class="circle">bio.singa.simulation.model.agents.linelike.<a href="bio/singa/simulation/model/agents/linelike/MicrotubuleOrganizingCentre.html" title="class in bio.singa.simulation.model.agents.linelike"><span class="typeNameLink">MicrotubuleOrganizingCentre</span></a></li>
<li class="circle">bio.singa.mathematics.metrics.implementations.<a href="bio/singa/mathematics/metrics/implementations/MinkowskiMetric.html" title="class in bio.singa.mathematics.metrics.implementations"><span class="typeNameLink">MinkowskiMetric</span></a><VectorType> (implements bio.singa.mathematics.metrics.model.<a href="bio/singa/mathematics/metrics/model/Metric.html" title="interface in bio.singa.mathematics.metrics.model">Metric</a><MetrizableType>)</li>
<li class="circle">bio.singa.structure.model.mmtf.<a href="bio/singa/structure/model/mmtf/MmtfAtom.html" title="class in bio.singa.structure.model.mmtf"><span class="typeNameLink">MmtfAtom</span></a> (implements bio.singa.structure.model.interfaces.<a href="bio/singa/structure/model/interfaces/Atom.html" title="interface in bio.singa.structure.model.interfaces">Atom</a>)</li>
<li class="circle">bio.singa.structure.model.mmtf.<a href="bio/singa/structure/model/mmtf/MmtfChain.html" title="class in bio.singa.structure.model.mmtf"><span class="typeNameLink">MmtfChain</span></a> (implements bio.singa.structure.model.interfaces.<a href="bio/singa/structure/model/interfaces/Chain.html" title="interface in bio.singa.structure.model.interfaces">Chain</a>)</li>
<li class="circle">bio.singa.structure.model.mmtf.<a href="bio/singa/structure/model/mmtf/MmtfLeafSubstructure.html" title="class in bio.singa.structure.model.mmtf"><span class="typeNameLink">MmtfLeafSubstructure</span></a><FamilyType> (implements bio.singa.structure.model.interfaces.<a href="bio/singa/structure/model/interfaces/LeafSubstructure.html" title="interface in bio.singa.structure.model.interfaces">LeafSubstructure</a><FamilyType>)
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<li class="circle">bio.singa.structure.model.mmtf.<a href="bio/singa/structure/model/mmtf/MmtfLigand.html" title="class in bio.singa.structure.model.mmtf"><span class="typeNameLink">MmtfLigand</span></a> (implements bio.singa.structure.model.interfaces.<a href="bio/singa/structure/model/interfaces/Ligand.html" title="interface in bio.singa.structure.model.interfaces">Ligand</a>)</li>
<li class="circle">bio.singa.structure.model.mmtf.<a href="bio/singa/structure/model/mmtf/MmtfNucleotide.html" title="class in bio.singa.structure.model.mmtf"><span class="typeNameLink">MmtfNucleotide</span></a> (implements bio.singa.structure.model.interfaces.<a href="bio/singa/structure/model/interfaces/Nucleotide.html" title="interface in bio.singa.structure.model.interfaces">Nucleotide</a>)</li>
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<li class="circle">bio.singa.structure.model.mmtf.<a href="bio/singa/structure/model/mmtf/MmtfModel.html" title="class in bio.singa.structure.model.mmtf"><span class="typeNameLink">MmtfModel</span></a> (implements bio.singa.structure.model.interfaces.<a href="bio/singa/structure/model/interfaces/Model.html" title="interface in bio.singa.structure.model.interfaces">Model</a>)</li>
<li class="circle">bio.singa.structure.parser.pdb.structures.iterators.<a href="bio/singa/structure/parser/pdb/structures/iterators/MmtfReducer.html" title="class in bio.singa.structure.parser.pdb.structures.iterators"><span class="typeNameLink">MmtfReducer</span></a></li>
<li class="circle">bio.singa.structure.model.mmtf.<a href="bio/singa/structure/model/mmtf/MmtfStructure.html" title="class in bio.singa.structure.model.mmtf"><span class="typeNameLink">MmtfStructure</span></a> (implements bio.singa.structure.model.interfaces.<a href="bio/singa/structure/model/interfaces/Structure.html" title="interface in bio.singa.structure.model.interfaces">Structure</a>)</li>
<li class="circle">bio.singa.simulation.model.modules.concentration.<a href="bio/singa/simulation/model/modules/concentration/ModuleFactory.html" title="class in bio.singa.simulation.model.modules.concentration"><span class="typeNameLink">ModuleFactory</span></a></li>
<li class="circle">bio.singa.simulation.export.features.<a href="bio/singa/simulation/export/features/ModuleSummaryTable.html" title="class in bio.singa.simulation.export.features"><span class="typeNameLink">ModuleSummaryTable</span></a></li>
<li class="circle">bio.singa.simulation.export.modules.<a href="bio/singa/simulation/export/modules/ModuleTable.html" title="class in bio.singa.simulation.export.modules"><span class="typeNameLink">ModuleTable</span></a></li>
<li class="circle">bio.singa.simulation.export.modules.<a href="bio/singa/simulation/export/modules/ModuleTableConverter.html" title="class in bio.singa.simulation.export.modules"><span class="typeNameLink">ModuleTableConverter</span></a></li>
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<li class="circle">bio.singa.structure.algorithms.molecules.<a href="bio/singa/structure/algorithms/molecules/MoleculeIsomorphism.html" title="class in bio.singa.structure.algorithms.molecules"><span class="typeNameLink">MoleculeIsomorphism</span></a></li>
<li class="circle">bio.singa.structure.algorithms.molecules.<a href="bio/singa/structure/algorithms/molecules/MoleculeIsomorphismFinder.html" title="class in bio.singa.structure.algorithms.molecules"><span class="typeNameLink">MoleculeIsomorphismFinder</span></a></li>
<li class="circle">bio.singa.structure.algorithms.molecules.<a href="bio/singa/structure/algorithms/molecules/MoleculeIsomorphismFinder.AtomConditions.html" title="class in bio.singa.structure.algorithms.molecules"><span class="typeNameLink">MoleculeIsomorphismFinder.AtomConditions</span></a></li>
<li class="circle">bio.singa.structure.algorithms.molecules.<a href="bio/singa/structure/algorithms/molecules/MoleculeIsomorphismFinder.BondConditions.html" title="class in bio.singa.structure.algorithms.molecules"><span class="typeNameLink">MoleculeIsomorphismFinder.BondConditions</span></a></li>
<li class="circle">bio.singa.javafx.viewer.<a href="bio/singa/javafx/viewer/MoleculeIsomorphismTest.html" title="class in bio.singa.javafx.viewer"><span class="typeNameLink">MoleculeIsomorphismTest</span></a></li>
<li class="circle">bio.singa.structure.algorithms.molecules.<a href="bio/singa/structure/algorithms/molecules/MoleculePathFinder.html" title="class in bio.singa.structure.algorithms.molecules"><span class="typeNameLink">MoleculePathFinder</span></a></li>
<li class="circle">bio.singa.javafx.renderer.molecules.<a href="bio/singa/javafx/renderer/molecules/MoleculeRendererOptions.html" title="class in bio.singa.javafx.renderer.molecules"><span class="typeNameLink">MoleculeRendererOptions</span></a></li>
<li class="circle">bio.singa.structure.algorithms.molecules.<a href="bio/singa/structure/algorithms/molecules/MoleculeRingFinder.html" title="class in bio.singa.structure.algorithms.molecules"><span class="typeNameLink">MoleculeRingFinder</span></a></li>
<li class="circle">bio.singa.structure.parser.mol.<a href="bio/singa/structure/parser/mol/MolParser.html" title="class in bio.singa.structure.parser.mol"><span class="typeNameLink">MolParser</span></a></li>
<li class="circle">bio.singa.chemistry.features.structure2d.<a href="bio/singa/chemistry/features/structure2d/MolParser2D.html" title="class in bio.singa.chemistry.features.structure2d"><span class="typeNameLink">MolParser2D</span></a></li>
<li class="circle">bio.singa.javafx.viewer.<a href="bio/singa/javafx/viewer/MolSvgWriter.html" title="class in bio.singa.javafx.viewer"><span class="typeNameLink">MolSvgWriter</span></a></li>
<li class="circle">bio.singa.javafx.viewer.<a href="bio/singa/javafx/viewer/MolTester.html" title="class in bio.singa.javafx.viewer"><span class="typeNameLink">MolTester</span></a></li>
<li class="circle">bio.singa.mathematics.graphs.trees.<a href="bio/singa/mathematics/graphs/trees/MultiTree.html" title="class in bio.singa.mathematics.graphs.trees"><span class="typeNameLink">MultiTree</span></a><T></li>
<li class="circle">bio.singa.mathematics.graphs.trees.<a href="bio/singa/mathematics/graphs/trees/MultiTreeNode.html" title="class in bio.singa.mathematics.graphs.trees"><span class="typeNameLink">MultiTreeNode</span></a><T></li>
<li class="circle">bio.singa.features.quantities.<a href="bio/singa/features/quantities/NaturalConstants.html" title="class in bio.singa.features.quantities"><span class="typeNameLink">NaturalConstants</span></a></li>
<li class="circle">bio.singa.sequence.algorithms.alignment.<a href="bio/singa/sequence/algorithms/alignment/NeedlemanWunschAlignment.html" title="class in bio.singa.sequence.algorithms.alignment"><span class="typeNameLink">NeedlemanWunschAlignment</span></a></li>
<li class="circle">bio.singa.simulation.model.graphs.<a href="bio/singa/simulation/model/graphs/NeighborhoodMappingManager.html" title="class in bio.singa.simulation.model.graphs"><span class="typeNameLink">NeighborhoodMappingManager</span></a></li>
<li class="circle">bio.singa.mathematics.algorithms.graphs.<a href="bio/singa/mathematics/algorithms/graphs/NeighbourhoodExtractor.html" title="class in bio.singa.mathematics.algorithms.graphs"><span class="typeNameLink">NeighbourhoodExtractor</span></a><NodeType,​EdgeType,​VectorType,​IdentifierType,​GraphType></li>
<li class="circle">bio.singa.simulation.trajectories.nested.<a href="bio/singa/simulation/trajectories/nested/NestedUpdateRecorder.html" title="class in bio.singa.simulation.trajectories.nested"><span class="typeNameLink">NestedUpdateRecorder</span></a> (implements bio.singa.core.events.<a href="bio/singa/core/events/UpdateEventListener.html" title="interface in bio.singa.core.events">UpdateEventListener</a><EventType>)</li>
<li class="circle">bio.singa.mathematics.graphs.trees.<a href="bio/singa/mathematics/graphs/trees/NewickParser.html" title="class in bio.singa.mathematics.graphs.trees"><span class="typeNameLink">NewickParser</span></a></li>
<li class="circle">javafx.scene.Node (implements javafx.event.EventTarget, javafx.css.Styleable)
<ul>
<li class="circle">javafx.scene.canvas.Canvas
<ul>
<li class="circle">bio.singa.javafx.renderer.graphs.<a href="bio/singa/javafx/renderer/graphs/GraphCanvas.html" title="class in bio.singa.javafx.renderer.graphs"><span class="typeNameLink">GraphCanvas</span></a></li>
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</li>
<li class="circle">javafx.scene.Parent
<ul>
<li class="circle">javafx.scene.Group
<ul>
<li class="circle">bio.singa.javafx.viewer.<a href="bio/singa/javafx/viewer/XForm.html" title="class in bio.singa.javafx.viewer"><span class="typeNameLink">XForm</span></a></li>
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</li>
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</li>
<li class="circle">bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.deltas.<a href="bio/singa/simulation/model/modules/concentration/imlementations/reactions/behaviors/deltas/NodeBehavior.html" title="class in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.deltas"><span class="typeNameLink">NodeBehavior</span></a> (implements bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.deltas.<a href="bio/singa/simulation/model/modules/concentration/imlementations/reactions/behaviors/deltas/DeltaBehavior.html" title="interface in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.deltas">DeltaBehavior</a>)</li>
<li class="circle">bio.singa.simulation.events.<a href="bio/singa/simulation/events/NodeEventEmitter.html" title="class in bio.singa.simulation.events"><span class="typeNameLink">NodeEventEmitter</span></a> (implements bio.singa.core.events.<a href="bio/singa/core/events/UpdateEventEmitter.html" title="interface in bio.singa.core.events">UpdateEventEmitter</a><EventType>)</li>
<li class="circle">bio.singa.mathematics.graphs.model.<a href="bio/singa/mathematics/graphs/model/Nodes.html" title="class in bio.singa.mathematics.graphs.model"><span class="typeNameLink">Nodes</span></a></li>
<li class="circle">bio.singa.simulation.model.simulation.error.<a href="bio/singa/simulation/model/simulation/error/NumericalError.html" title="class in bio.singa.simulation.model.simulation.error"><span class="typeNameLink">NumericalError</span></a></li>
<li class="circle">bio.singa.structure.model.oak.<a href="bio/singa/structure/model/oak/OakAtom.html" title="class in bio.singa.structure.model.oak"><span class="typeNameLink">OakAtom</span></a> (implements bio.singa.structure.model.interfaces.<a href="bio/singa/structure/model/interfaces/Atom.html" title="interface in bio.singa.structure.model.interfaces">Atom</a>)</li>
<li class="circle">bio.singa.structure.model.oak.<a href="bio/singa/structure/model/oak/OakBond.html" title="class in bio.singa.structure.model.oak"><span class="typeNameLink">OakBond</span></a></li>
<li class="circle">bio.singa.structure.model.oak.<a href="bio/singa/structure/model/oak/OakChain.html" title="class in bio.singa.structure.model.oak"><span class="typeNameLink">OakChain</span></a> (implements bio.singa.structure.model.interfaces.<a href="bio/singa/structure/model/interfaces/Chain.html" title="interface in bio.singa.structure.model.interfaces">Chain</a>)</li>
<li class="circle">bio.singa.structure.model.oak.<a href="bio/singa/structure/model/oak/OakLeafSubstructure.html" title="class in bio.singa.structure.model.oak"><span class="typeNameLink">OakLeafSubstructure</span></a><FamilyType> (implements bio.singa.structure.model.interfaces.<a href="bio/singa/structure/model/interfaces/LeafSubstructure.html" title="interface in bio.singa.structure.model.interfaces">LeafSubstructure</a><FamilyType>)
<ul>
<li class="circle">bio.singa.structure.model.oak.<a href="bio/singa/structure/model/oak/OakAminoAcid.html" title="class in bio.singa.structure.model.oak"><span class="typeNameLink">OakAminoAcid</span></a> (implements bio.singa.structure.model.interfaces.<a href="bio/singa/structure/model/interfaces/AminoAcid.html" title="interface in bio.singa.structure.model.interfaces">AminoAcid</a>)</li>
<li class="circle">bio.singa.structure.model.oak.<a href="bio/singa/structure/model/oak/OakLigand.html" title="class in bio.singa.structure.model.oak"><span class="typeNameLink">OakLigand</span></a> (implements bio.singa.structure.model.interfaces.<a href="bio/singa/structure/model/interfaces/Ligand.html" title="interface in bio.singa.structure.model.interfaces">Ligand</a>)</li>
<li class="circle">bio.singa.structure.model.oak.<a href="bio/singa/structure/model/oak/OakNucleotide.html" title="class in bio.singa.structure.model.oak"><span class="typeNameLink">OakNucleotide</span></a> (implements bio.singa.structure.model.interfaces.<a href="bio/singa/structure/model/interfaces/Nucleotide.html" title="interface in bio.singa.structure.model.interfaces">Nucleotide</a>)</li>
</ul>
</li>
<li class="circle">bio.singa.structure.model.oak.<a href="bio/singa/structure/model/oak/OakModel.html" title="class in bio.singa.structure.model.oak"><span class="typeNameLink">OakModel</span></a> (implements bio.singa.structure.model.interfaces.<a href="bio/singa/structure/model/interfaces/Model.html" title="interface in bio.singa.structure.model.interfaces">Model</a>)</li>
<li class="circle">bio.singa.structure.model.oak.<a href="bio/singa/structure/model/oak/OakStructure.html" title="class in bio.singa.structure.model.oak"><span class="typeNameLink">OakStructure</span></a> (implements bio.singa.structure.model.interfaces.<a href="bio/singa/structure/model/interfaces/Structure.html" title="interface in bio.singa.structure.model.interfaces">Structure</a>)</li>
<li class="circle">bio.singa.simulation.model.agents.organelles.<a href="bio/singa/simulation/model/agents/organelles/OrganelleImageParser.html" title="class in bio.singa.simulation.model.agents.organelles"><span class="typeNameLink">OrganelleImageParser</span></a></li>
<li class="circle">bio.singa.simulation.model.agents.organelles.<a href="bio/singa/simulation/model/agents/organelles/OrganelleTemplate.html" title="class in bio.singa.simulation.model.agents.organelles"><span class="typeNameLink">OrganelleTemplate</span></a></li>
<li class="circle">bio.singa.chemistry.annotations.taxonomy.<a href="bio/singa/chemistry/annotations/taxonomy/Organism.html" title="class in bio.singa.chemistry.annotations.taxonomy"><span class="typeNameLink">Organism</span></a> (implements bio.singa.features.identifiers.model.<a href="bio/singa/features/identifiers/model/Identifiable.html" title="interface in bio.singa.features.identifiers.model">Identifiable</a><IdentifierType>)</li>
<li class="circle">bio.singa.mathematics.metrics.implementations.<a href="bio/singa/mathematics/metrics/implementations/OverlapDistance.html" title="class in bio.singa.mathematics.metrics.implementations"><span class="typeNameLink">OverlapDistance</span></a> (implements bio.singa.mathematics.metrics.model.<a href="bio/singa/mathematics/metrics/model/Metric.html" title="interface in bio.singa.mathematics.metrics.model">Metric</a><MetrizableType>)</li>
<li class="circle">bio.singa.core.utility.<a href="bio/singa/core/utility/Pair.html" title="class in bio.singa.core.utility"><span class="typeNameLink">Pair</span></a><ValueType>
<ul>
<li class="circle">bio.singa.core.utility.<a href="bio/singa/core/utility/CommutablePair.html" title="class in bio.singa.core.utility"><span class="typeNameLink">CommutablePair</span></a><ValueType></li>
</ul>
</li>
<li class="circle">bio.singa.mathematics.geometry.edges.<a href="bio/singa/mathematics/geometry/edges/Parabola.html" title="class in bio.singa.mathematics.geometry.edges"><span class="typeNameLink">Parabola</span></a></li>
<li class="circle">bio.singa.simulation.model.parameters.<a href="bio/singa/simulation/model/parameters/Parameter.html" title="class in bio.singa.simulation.model.parameters"><span class="typeNameLink">Parameter</span></a><QuantityType></li>
<li class="circle">bio.singa.simulation.model.parameters.<a href="bio/singa/simulation/model/parameters/ParameterStorage.html" title="class in bio.singa.simulation.model.parameters"><span class="typeNameLink">ParameterStorage</span></a></li>
<li class="circle">bio.singa.structure.parser.pdb.structures.iterators.converters.<a href="bio/singa/structure/parser/pdb/structures/iterators/converters/PathToMmtfBytesConverter.html" title="class in bio.singa.structure.parser.pdb.structures.iterators.converters"><span class="typeNameLink">PathToMmtfBytesConverter</span></a> (implements bio.singa.structure.parser.pdb.structures.iterators.converters.<a href="bio/singa/structure/parser/pdb/structures/iterators/converters/ContentConverter.html" title="interface in bio.singa.structure.parser.pdb.structures.iterators.converters">ContentConverter</a><ContentType,​ConversionType>)</li>
<li class="circle">bio.singa.structure.parser.pdb.structures.iterators.converters.<a href="bio/singa/structure/parser/pdb/structures/iterators/converters/PathToObjectConverter.html" title="class in bio.singa.structure.parser.pdb.structures.iterators.converters"><span class="typeNameLink">PathToObjectConverter</span></a> (implements bio.singa.structure.parser.pdb.structures.iterators.converters.<a href="bio/singa/structure/parser/pdb/structures/iterators/converters/ContentConverter.html" title="interface in bio.singa.structure.parser.pdb.structures.iterators.converters">ContentConverter</a><ContentType,​ConversionType>)</li>
<li class="circle">bio.singa.structure.parser.pdb.structures.iterators.converters.<a href="bio/singa/structure/parser/pdb/structures/iterators/converters/PathToPDBLinesConverter.html" title="class in bio.singa.structure.parser.pdb.structures.iterators.converters"><span class="typeNameLink">PathToPDBLinesConverter</span></a> (implements bio.singa.structure.parser.pdb.structures.iterators.converters.<a href="bio/singa/structure/parser/pdb/structures/iterators/converters/ContentConverter.html" title="interface in bio.singa.structure.parser.pdb.structures.iterators.converters">ContentConverter</a><ContentType,​ConversionType>)</li>
<li class="circle">bio.singa.structure.parser.pdb.structures.iterators.converters.<a href="bio/singa/structure/parser/pdb/structures/iterators/converters/PDBIdentifierToURLConverter.html" title="class in bio.singa.structure.parser.pdb.structures.iterators.converters"><span class="typeNameLink">PDBIdentifierToURLConverter</span></a> (implements bio.singa.structure.parser.pdb.structures.iterators.converters.<a href="bio/singa/structure/parser/pdb/structures/iterators/converters/ContentConverter.html" title="interface in bio.singa.structure.parser.pdb.structures.iterators.converters">ContentConverter</a><ContentType,​ConversionType>)</li>
<li class="circle">bio.singa.structure.parser.pdb.rest.cluster.<a href="bio/singa/structure/parser/pdb/rest/cluster/PDBSequenceClusterMember.html" title="class in bio.singa.structure.parser.pdb.rest.cluster"><span class="typeNameLink">PDBSequenceClusterMember</span></a></li>
<li class="circle">bio.singa.structure.parser.pfam.<a href="bio/singa/structure/parser/pfam/PfamParser.html" title="class in bio.singa.structure.parser.pfam"><span class="typeNameLink">PfamParser</span></a></li>
<li class="circle">bio.singa.structure.parser.pfam.<a href="bio/singa/structure/parser/pfam/PfamParser.Builder.html" title="class in bio.singa.structure.parser.pfam"><span class="typeNameLink">PfamParser.Builder</span></a> (implements bio.singa.structure.parser.pfam.<a href="bio/singa/structure/parser/pfam/PfamParser.ChainStep.html" title="interface in bio.singa.structure.parser.pfam">PfamParser.ChainStep</a>, bio.singa.structure.parser.pfam.<a href="bio/singa/structure/parser/pfam/PfamParser.DomainStep.html" title="interface in bio.singa.structure.parser.pfam">PfamParser.DomainStep</a>, bio.singa.structure.parser.pfam.<a href="bio/singa/structure/parser/pfam/PfamParser.FamilyStep.html" title="interface in bio.singa.structure.parser.pfam">PfamParser.FamilyStep</a>, bio.singa.structure.parser.pfam.<a href="bio/singa/structure/parser/pfam/PfamParser.VersionStep.html" title="interface in bio.singa.structure.parser.pfam">PfamParser.VersionStep</a>)</li>
<li class="circle">bio.singa.structure.parser.plip.<a href="bio/singa/structure/parser/plip/PlipContentHandler.html" title="class in bio.singa.structure.parser.plip"><span class="typeNameLink">PlipContentHandler</span></a> (implements org.xml.sax.ContentHandler)</li>
<li class="circle">bio.singa.structure.parser.plip.<a href="bio/singa/structure/parser/plip/PlipCountFingerprint.html" title="class in bio.singa.structure.parser.plip"><span class="typeNameLink">PlipCountFingerprint</span></a></li>
<li class="circle">bio.singa.structure.parser.plip.<a href="bio/singa/structure/parser/plip/PlipShellGenerator.html" title="class in bio.singa.structure.parser.plip"><span class="typeNameLink">PlipShellGenerator</span></a></li>
<li class="circle">bio.singa.javafx.renderer.graphs.<a href="bio/singa/javafx/renderer/graphs/PNGExporter.html" title="class in bio.singa.javafx.renderer.graphs"><span class="typeNameLink">PNGExporter</span></a></li>
<li class="circle">bio.singa.mathematics.geometry.model.<a href="bio/singa/mathematics/geometry/model/Polygon.IntersectionFragment.html" title="class in bio.singa.mathematics.geometry.model"><span class="typeNameLink">Polygon.IntersectionFragment</span></a></li>
<li class="circle">bio.singa.mathematics.geometry.faces.<a href="bio/singa/mathematics/geometry/faces/Polygons.html" title="class in bio.singa.mathematics.geometry.faces"><span class="typeNameLink">Polygons</span></a></li>
<li class="circle">bio.singa.simulation.model.modules.concentration.imlementations.transport.<a href="bio/singa/simulation/model/modules/concentration/imlementations/transport/PorousDiffusion.PorousDiffusionBuilder.html" title="class in bio.singa.simulation.model.modules.concentration.imlementations.transport"><span class="typeNameLink">PorousDiffusion.PorousDiffusionBuilder</span></a> (implements bio.singa.simulation.model.modules.concentration.<a href="bio/singa/simulation/model/modules/concentration/ModuleBuilder.html" title="interface in bio.singa.simulation.model.modules.concentration">ModuleBuilder</a><ModuleType>, bio.singa.simulation.model.modules.concentration.imlementations.transport.<a href="bio/singa/simulation/model/modules/concentration/imlementations/transport/PorousDiffusion.BuildStep.html" title="interface in bio.singa.simulation.model.modules.concentration.imlementations.transport">PorousDiffusion.BuildStep</a>, bio.singa.simulation.model.modules.concentration.imlementations.transport.<a href="bio/singa/simulation/model/modules/concentration/imlementations/transport/PorousDiffusion.FeatureStep.html" title="interface in bio.singa.simulation.model.modules.concentration.imlementations.transport">PorousDiffusion.FeatureStep</a>)</li>
<li class="circle">bio.singa.mathematics.algorithms.primes.<a href="bio/singa/mathematics/algorithms/primes/Primes.html" title="class in bio.singa.mathematics.algorithms.primes"><span class="typeNameLink">Primes</span></a></li>
<li class="circle">bio.singa.structure.algorithms.superimposition.scores.<a href="bio/singa/structure/algorithms/superimposition/scores/PsScore.html" title="class in bio.singa.structure.algorithms.superimposition.scores"><span class="typeNameLink">PsScore</span></a></li>
<li class="circle">bio.singa.chemistry.features.databases.pubchem.<a href="bio/singa/chemistry/features/databases/pubchem/PubChemDatabase.html" title="class in bio.singa.chemistry.features.databases.pubchem"><span class="typeNameLink">PubChemDatabase</span></a></li>
<li class="circle">bio.singa.mathematics.algorithms.matrix.<a href="bio/singa/mathematics/algorithms/matrix/QRDecomposition.html" title="class in bio.singa.mathematics.algorithms.matrix"><span class="typeNameLink">QRDecomposition</span></a></li>
<li class="circle">bio.singa.mathematics.quaternions.<a href="bio/singa/mathematics/quaternions/Quaternions.html" title="class in bio.singa.mathematics.quaternions"><span class="typeNameLink">Quaternions</span></a></li>
<li class="circle">bio.singa.core.utility.<a href="bio/singa/core/utility/Range.html" title="class in bio.singa.core.utility"><span class="typeNameLink">Range</span></a><RangeType> (implements bio.singa.core.utility.<a href="bio/singa/core/utility/Bounded.html" title="interface in bio.singa.core.utility">Bounded</a><BoundType>)
<ul>
<li class="circle">bio.singa.mathematics.intervals.<a href="bio/singa/mathematics/intervals/DoubleInterval.html" title="class in bio.singa.mathematics.intervals"><span class="typeNameLink">DoubleInterval</span></a> (implements bio.singa.mathematics.concepts.<a href="bio/singa/mathematics/concepts/Ring.html" title="interface in bio.singa.mathematics.concepts">Ring</a><RingType>)</li>
<li class="circle">bio.singa.mathematics.intervals.<a href="bio/singa/mathematics/intervals/IntegerInterval.html" title="class in bio.singa.mathematics.intervals"><span class="typeNameLink">IntegerInterval</span></a> (implements bio.singa.mathematics.metrics.model.<a href="bio/singa/mathematics/metrics/model/Metrizable.html" title="interface in bio.singa.mathematics.metrics.model">Metrizable</a><MetrizableType>, bio.singa.mathematics.concepts.<a href="bio/singa/mathematics/concepts/Ring.html" title="interface in bio.singa.mathematics.concepts">Ring</a><RingType>)</li>