chimp_singularity.def

Bootstrap: localimage
From: /home/simonpf/src/chimp_singularity/chimp_conda.sif

%files
    /home/simonpf/src/pansat /pansat
    /home/simonpf/src/quantnn /quantnn
    /home/simonpf/src/chimp /chimp
    /home/simonpf/src/pytorch_retrieve /pytorch_retrieve

%environment
    export PATH="/opt/conda/bin:$PATH"
    export PATH="/opt/conda/envs/chimp/bin:$PATH"

%post
    /opt/conda/envs/chimp/bin/python3 -m pip install -e /pansat
    /opt/conda/envs/chimp/bin/python3 -m pip install -e /quantnn
    /opt/conda/envs/chimp/bin/python3 -m pip install -e /pytorch_retrieve
    /opt/conda/envs/chimp/bin/python3 -m pip install -e /chimp
    /opt/conda/envs/chimp/bin/python3 -m pip install notebook
    echo ". /singularity_shell_init.sh" >> $SINGULARITY_ENVIRONMENT
    echo "micromamba activate chimp" >> $SINGULARITY_ENVIRONMENT

%runscript

    exec "$@"