diff --git a/.bumpversion.cfg b/.bumpversion.cfg index 335f5048..bffab80a 100644 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 1.1.0 +current_version = 1.2.0 commit = True tag = False diff --git a/.github/workflows/build_conda_recipes.yaml b/.github/workflows/build_conda_recipes.yaml index 847b4c75..9311608d 100644 --- a/.github/workflows/build_conda_recipes.yaml +++ b/.github/workflows/build_conda_recipes.yaml @@ -10,7 +10,7 @@ env: recipe_path: conda/recipe env_yml_path: conda/env/yml env_lock_path: conda/env/lock - VERSION: '1.1.0' # versioned by bump2version + VERSION: '1.2.0' # versioned by bump2version jobs: build_conda_pkgs: # When merging to one of the branches above and the commit message matches diff --git a/conda/env/yml/pcgr.yml b/conda/env/yml/pcgr.yml index 69d770b5..3f8b895a 100644 --- a/conda/env/yml/pcgr.yml +++ b/conda/env/yml/pcgr.yml @@ -7,7 +7,7 @@ channels: - defaults dependencies: - - pcgr ==1.1.0 # versioned by bump2version + - pcgr ==1.2.0 # versioned by bump2version - bedtools ==2.30.0 - bcftools ==1.10.2 - cyvcf2 ==0.30.11 diff --git a/conda/env/yml/pcgrr.yml b/conda/env/yml/pcgrr.yml index d31cff90..b7578dcc 100644 --- a/conda/env/yml/pcgrr.yml +++ b/conda/env/yml/pcgrr.yml @@ -8,7 +8,7 @@ channels: dependencies: - python - - r-pcgrr ==1.1.0 # versioned by bump2version + - r-pcgrr ==1.2.0 # versioned by bump2version - r-cpsr - r-argparse - bioconductor-bsgenome.hsapiens.ucsc.hg38 diff --git a/conda/env/yml/pkgdown.yml b/conda/env/yml/pkgdown.yml index cf2321a0..4743b299 100644 --- a/conda/env/yml/pkgdown.yml +++ b/conda/env/yml/pkgdown.yml @@ -1,6 +1,6 @@ name: pkgdown dependencies: - - r-pcgrr ==1.1.0 # versioned by bump2version + - r-pcgrr ==1.2.0 # versioned by bump2version - r-cpsr - r-pkgdown - r-readr diff --git a/conda/recipe/pcgrr/meta.yaml b/conda/recipe/pcgrr/meta.yaml index 5851dc3b..903ce048 100644 --- a/conda/recipe/pcgrr/meta.yaml +++ b/conda/recipe/pcgrr/meta.yaml @@ -1,6 +1,6 @@ package: name: r-pcgrr - version: 1.1.0 # versioned by bump2version + version: 1.2.0 # versioned by bump2version source: path: ../../../pcgrr diff --git a/pcgr/_version.py b/pcgr/_version.py index b1258556..02535ecf 100644 --- a/pcgr/_version.py +++ b/pcgr/_version.py @@ -1,2 +1,2 @@ # versioned by bump2version -__version__ = '1.1.0' +__version__ = '1.2.0' diff --git a/pcgrr/DESCRIPTION b/pcgrr/DESCRIPTION index ac831238..c997a420 100644 --- a/pcgrr/DESCRIPTION +++ b/pcgrr/DESCRIPTION @@ -1,7 +1,7 @@ Package: pcgrr Type: Package Title: Personal Cancer Genome ReporteR -Version: 1.1.0 +Version: 1.2.0 Date: 2022-03-30 Authors@R: c(person(given = "Sigve", diff --git a/pcgrr/vignettes/installation.Rmd b/pcgrr/vignettes/installation.Rmd index ade5eecc..a08e0b3e 100644 --- a/pcgrr/vignettes/installation.Rmd +++ b/pcgrr/vignettes/installation.Rmd @@ -12,7 +12,7 @@ output: rmarkdown::html_document software requirements: ```bash -PCGR_VERSION="1.1.0" +PCGR_VERSION="1.2.0" PCGR_REPO="https://raw.githubusercontent.com/sigven/pcgr/v${PCGR_VERSION}/conda/env/lock/" PLATFORM="linux" # or "osx" @@ -79,7 +79,7 @@ Download and unpack the latest software release from