Merge branch 'bundle_update_2023' of github.com:sigven/pcgr into bund…

…le_update_2023

conda/env/lock/pcgr-linux-64.lock

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: 8c9bf24171268aff53d7b348e6cc7b1ca22d4854c621c12ccb88557c4e53c4d7
+# input_hash: e9ac588f8215b52864ce7590f0e6a2d642f8548113d5eea9e3cdc0dfc5c0104d
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
 https://conda.anaconda.org/bioconda/linux-64/blast-legacy-2.2.26-h9ee0642_3.tar.bz2#b7fe67ef984501e8089a142f1f58ab2f
@@ -201,7 +201,7 @@ https://conda.anaconda.org/bioconda/linux-64/pybedtools-0.10.0-py312ha1f7cf2_1.t
 https://conda.anaconda.org/conda-forge/linux-64/scipy-1.13.1-py312hc2bc53b_0.conda#864b2399a9c998e17d1a9a4e0c601285
 https://conda.anaconda.org/bioconda/noarch/vcf2maf-umccr-1.6.21.20230511-hdfd78af_0.tar.bz2#ec3a03df0bce17c35b2a2d1436c718ea
 https://conda.anaconda.org/bioconda/linux-64/blast-2.15.0-pl5321h6f7f691_1.tar.bz2#f7e6a87317b5d00469d39a2d1ef2698f
-https://conda.anaconda.org/pcgr/noarch/pcgr-1.4.1.9013-py_0.tar.bz2#d29af9fb0700366626e1691b2211e78d
+https://conda.anaconda.org/pcgr/noarch/pcgr-1.0.1.9014-py_0.tar.bz2#e7947f7f6ec3f3ee1a57b59788d8b9a0
 https://conda.anaconda.org/bioconda/noarch/perl-http-message-6.36-pl5321hdfd78af_0.tar.bz2#a213d1308ffa8e0789996ae6ecda98ae
 https://conda.anaconda.org/bioconda/noarch/perl-net-http-6.22-pl5321hdfd78af_0.tar.bz2#f3b44f2b9932c3def346e6ad9aabe43d
 https://conda.anaconda.org/bioconda/noarch/perl-www-robotrules-6.02-pl5321hdfd78af_4.tar.bz2#8305f4ed6306b1125a8c8caf2f05aec8

conda/env/lock/pcgr-osx-64.lock

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: osx-64
-# input_hash: 72a8d5fb1d6bdb42fa3a15e108f108eb30a7bd3cbccd6f25e3d210ea17b3b062
+# input_hash: cecc62e6e4a416ab3b4a2f8ff1b66ae6845ee13487dbc1be022abd42cae05f5c
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/osx-64/argtable2-2.13-h10d778d_1004.conda#7ebcbc431363dfbf9ae25e6a7205d414
 https://conda.anaconda.org/conda-forge/osx-64/bzip2-1.0.8-h10d778d_5.conda#6097a6ca9ada32699b5fc4312dd6ef18
@@ -212,7 +212,7 @@ https://conda.anaconda.org/bioconda/noarch/perl-libwww-perl-6.67-pl5321hdfd78af_
 https://conda.anaconda.org/bioconda/osx-64/pybedtools-0.10.0-py310h0b3aad1_1.tar.bz2#ade72e96268dba2ca0ba1f728dfe4c43
 https://conda.anaconda.org/conda-forge/osx-64/scipy-1.13.1-py310h35d8cac_0.conda#97b362043d6a1dd28e7da5fbf277594d
 https://conda.anaconda.org/conda-forge/osx-64/compiler-rt-12.0.1-he01351e_0.tar.bz2#aa2cb3794dae4a09f19c3b7169b5df1f
-https://conda.anaconda.org/pcgr/noarch/pcgr-1.4.1.9013-py_0.tar.bz2#d29af9fb0700366626e1691b2211e78d
+https://conda.anaconda.org/pcgr/noarch/pcgr-1.0.1.9014-py_0.tar.bz2#e7947f7f6ec3f3ee1a57b59788d8b9a0
 https://conda.anaconda.org/bioconda/noarch/perl-xml-dom-1.46-pl5321hdfd78af_1.tar.bz2#45b7ce435727456727f45b3e2121b23b
 https://conda.anaconda.org/bioconda/osx-64/t-coffee-12.00.7fb08c2-h26a2512_0.tar.bz2#fe6f3532da0e9d3868b58ecd07f33744
 https://conda.anaconda.org/bioconda/noarch/vcf2tsvpy-0.6.1-pyhda70652_0.tar.bz2#cb9612a58cefb7e2a144c759027c0a94

conda/env/lock/pcgrr-linux-64.lock

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: 1865f68da5c458ecf0985c98f4c6fbac8fd9a7e0f970dd22d81c876dd171eb22
+# input_hash: c6a991d40b8cd3345b17b53d4876acd1db59bf08a1b0bb15e72f7a51e1f246ac
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
 https://conda.anaconda.org/conda-forge/noarch/_r-mutex-1.0.1-anacondar_1.tar.bz2#19f9db5f4f1b7f5ef5f6d67207f25f38
@@ -324,5 +324,5 @@ https://conda.anaconda.org/bioconda/noarch/bioconductor-bsgenome.hsapiens.ucsc.h
 https://conda.anaconda.org/bioconda/noarch/bioconductor-genomicfeatures-1.54.1-r43hdfd78af_0.tar.bz2#445ea419486180673fffc192b5fe8edb
 https://conda.anaconda.org/bioconda/linux-64/bioconductor-variantannotation-1.48.1-r43ha9d7317_1.tar.bz2#01c0b8e76583c3f8872e3181dd06ffbd
 https://conda.anaconda.org/bioconda/noarch/bioconductor-mutationalpatterns-3.12.0-r43hdfd78af_0.tar.bz2#d22030798f7d464ddb092e4651625210
-https://conda.anaconda.org/pcgr/noarch/r-pcgrr-1.4.1.9013-r43_0.tar.bz2#8337bbc9d94d0268b9a3dab4be5eec74
-https://conda.anaconda.org/pcgr/noarch/r-cpsr-1.0.1.9012-r43_0.tar.bz2#246a894396a58bc6a09dfaa6ef297b35
+https://conda.anaconda.org/pcgr/noarch/r-pcgrr-1.0.1.9014-r43_0.tar.bz2#fdc0e67c6d620fd223f4033500cc6cfc
+https://conda.anaconda.org/pcgr/noarch/r-cpsr-1.0.1.9013-r43_0.tar.bz2#4896eefc31b8f2fb306eccf1b709cd37

conda/env/lock/pcgrr-osx-64.lock

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: osx-64
-# input_hash: 2a84fcf28c9b61aff3aa698b7910da7345554e64f576f2e8f837c05bc4b0b8d6
+# input_hash: 7d33e81191311d4a9ffb291c71b81731bed0dc93e8f5944c184ff9e213b99e32
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/noarch/_r-mutex-1.0.1-anacondar_1.tar.bz2#19f9db5f4f1b7f5ef5f6d67207f25f38
 https://conda.anaconda.org/conda-forge/osx-64/bzip2-1.0.8-h10d778d_5.conda#6097a6ca9ada32699b5fc4312dd6ef18
@@ -318,5 +318,5 @@ https://conda.anaconda.org/bioconda/noarch/bioconductor-bsgenome.hsapiens.ucsc.h
 https://conda.anaconda.org/bioconda/noarch/bioconductor-genomicfeatures-1.54.1-r43hdfd78af_0.tar.bz2#445ea419486180673fffc192b5fe8edb
 https://conda.anaconda.org/bioconda/osx-64/bioconductor-variantannotation-1.48.1-r43h4c50009_1.tar.bz2#4bc1f791804daa0570cd35a63ca0a268
 https://conda.anaconda.org/bioconda/noarch/bioconductor-mutationalpatterns-3.12.0-r43hdfd78af_0.tar.bz2#d22030798f7d464ddb092e4651625210
-https://conda.anaconda.org/pcgr/noarch/r-pcgrr-1.4.1.9013-r43_0.tar.bz2#8337bbc9d94d0268b9a3dab4be5eec74
-https://conda.anaconda.org/pcgr/noarch/r-cpsr-1.0.1.9012-r43_0.tar.bz2#246a894396a58bc6a09dfaa6ef297b35
+https://conda.anaconda.org/pcgr/noarch/r-pcgrr-1.0.1.9014-r43_0.tar.bz2#fdc0e67c6d620fd223f4033500cc6cfc
+https://conda.anaconda.org/pcgr/noarch/r-cpsr-1.0.1.9013-r43_0.tar.bz2#4896eefc31b8f2fb306eccf1b709cd37