From 18732d78bc135854f8b6abf1627ce90ae7002970 Mon Sep 17 00:00:00 2001 From: GitHub Actions Date: Thu, 1 Aug 2024 13:16:35 +0000 Subject: [PATCH] [bot] Updating conda-lock files (v2.0.3) --- conda/env/lock/pcgr-linux-64.lock | 36 +++--- conda/env/lock/pcgr-osx-64.lock | 26 ++--- conda/env/lock/pcgrr-linux-64.lock | 151 ++++++++++++------------- conda/env/lock/pcgrr-osx-64.lock | 171 +++++++++++++++-------------- 4 files changed, 193 insertions(+), 191 deletions(-) diff --git a/conda/env/lock/pcgr-linux-64.lock b/conda/env/lock/pcgr-linux-64.lock index 76ed5960..10470c29 100644 --- a/conda/env/lock/pcgr-linux-64.lock +++ b/conda/env/lock/pcgr-linux-64.lock @@ -1,13 +1,13 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: e0bb967a48030190e9194ebda85d220d2aa530d652f188c1f0b4f31f99074c41 +# input_hash: 76e2c148ffc2060f679f2b1df000c5fb33cbd7100f8504cc5e1b8ad13d00b4d5 @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 https://conda.anaconda.org/bioconda/linux-64/blast-legacy-2.2.26-h9ee0642_3.tar.bz2#b7fe67ef984501e8089a142f1f58ab2f https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.7.4-hbcca054_0.conda#23ab7665c5f63cfb9f1f6195256daac6 https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.40-hf3520f5_7.conda#b80f2f396ca2c28b8c14c437a4ed1e74 https://conda.anaconda.org/conda-forge/linux-64/libgfortran-3.0.0-1.tar.bz2#d7c7e92a8ccc518709474dd3eda896b9 -https://conda.anaconda.org/conda-forge/linux-64/pandoc-3.2.1-ha770c72_0.conda#b39b12d3809e4042f832b76192e0e7e8 +https://conda.anaconda.org/conda-forge/linux-64/pandoc-3.3-ha770c72_0.conda#0a3af8b93ba501c6ba020deacc9df841 https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.12-4_cp312.conda#dccc2d142812964fcc6abdc97b672dff https://conda.anaconda.org/conda-forge/noarch/tzdata-2024a-h0c530f3_0.conda#161081fc7cec0bfda0d86d7cb595f8d8 https://conda.anaconda.org/bioconda/linux-64/vcfanno-0.3.5-h9ee0642_1.tar.bz2#8a4602d50382770bdc2d789c3fbd1862 @@ -16,7 +16,7 @@ https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2# https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.1.0-h77fa898_0.conda#ca0fad6a41ddaef54a153b78eccb5037 https://conda.anaconda.org/conda-forge/linux-64/argtable2-2.13-hd590300_1004.conda#d7d089e975b1213c2a0f94e592b7b422 https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h4bc722e_7.conda#62ee74e96c5ebb0af99386de58cf9553 -https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.32.2-h4bc722e_0.conda#8024af1ee7078e37fa3101c0a0296af2 +https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.32.3-h4bc722e_0.conda#7624e34ee6baebfc80d67bac76cc9d9d https://conda.anaconda.org/conda-forge/linux-64/gettext-tools-0.22.5-h59595ed_2.conda#985f2f453fb72408d6b6f1be0f324033 https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2#30186d27e2c9fa62b45fb1476b7200e3 https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.20-hd590300_0.conda#8e88f9389f1165d7c0936fe40d9a9a79 @@ -33,7 +33,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda# https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-h4ab18f5_6.conda#27329162c0dc732bcf67a4e0cd488125 https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h59595ed_0.conda#fcea371545eda051b6deafb24889fc69 -https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.1-h4ab18f5_1.conda#b1e9d076f14e8d776213fd5047b4c3d9 +https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.1-h4bc722e_2.conda#e1b454497f9f7c1147fdde4b53f1b512 https://conda.anaconda.org/bioconda/linux-64/paml-4.10.7-h031d066_1.tar.bz2#627002991a379d013307808bf9b71676 https://conda.anaconda.org/bioconda/linux-64/poa-2.0-h031d066_5.tar.bz2#7f92f2dd187e08868ffc6a9e12525f75 https://conda.anaconda.org/conda-forge/linux-64/unzip-6.0-h7f98852_3.tar.bz2#7cb7109505433a5abbf68bb34b31edac @@ -70,7 +70,7 @@ https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.3-h659f571_0.conda#3f4 https://conda.anaconda.org/conda-forge/linux-64/libasprintf-devel-0.22.5-h661eb56_2.conda#02e41ab5834dcdcc8590cf29d9526f50 https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.27-pthreads_hac2b453_1.conda#ae05ece66d3924ac3d48b4aa3fa96cec https://conda.anaconda.org/conda-forge/linux-64/libprotobuf-4.25.3-h08a7969_0.conda#6945825cebd2aeb16af4c69d97c32c13 -https://conda.anaconda.org/conda-forge/linux-64/mpfr-4.2.1-h9458935_1.conda#8083b20f566639c22f78bcd6ca35b276 +https://conda.anaconda.org/conda-forge/linux-64/mpfr-4.2.1-h38ae2d0_2.conda#168e18a2bba4f8520e6c5e38982f5847 https://conda.anaconda.org/conda-forge/linux-64/mysql-client-8.3.0-h545f5f4_4.conda#0570644b7f6a2f104242653405a56d09 https://conda.anaconda.org/conda-forge/linux-64/mysql-libs-8.3.0-hca2cd23_4.conda#1b50eebe2a738a3146c154d2eceaa8b6 https://conda.anaconda.org/conda-forge/linux-64/pcre2-10.35-h032f7d1_2.tar.bz2#f62023096f15070e1469000060a781c1 @@ -124,7 +124,7 @@ https://conda.anaconda.org/conda-forge/noarch/click-8.1.7-unix_pyh707e725_0.cond https://conda.anaconda.org/conda-forge/linux-64/cyrus-sasl-2.1.27-h54b06d7_7.conda#dce22f70b4e5a407ce88f2be046f4ceb https://conda.anaconda.org/conda-forge/linux-64/gettext-0.22.5-h59595ed_2.conda#219ba82e95d7614cf7140d2a4afc0926 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@@ # Generated by conda-lock. # platform: osx-64 -# input_hash: 9ace53fcafd294f50dccff55d42d6f90d7301818e3f8ef8a84913b776eac31bb +# input_hash: 6283af074c47e9b9939ba19d1fddef14aa36a360265579d7dfa389f2e4818ff7 @EXPLICIT https://conda.anaconda.org/conda-forge/osx-64/argtable2-2.13-h10d778d_1004.conda#7ebcbc431363dfbf9ae25e6a7205d414 https://conda.anaconda.org/conda-forge/osx-64/ca-certificates-2024.7.4-h8857fd0_0.conda#7df874a4b05b2d2b82826190170eaa0f @@ -14,7 +14,7 @@ https://conda.anaconda.org/conda-forge/osx-64/libntlm-1.4-h0d85af4_1002.tar.bz2# https://conda.anaconda.org/conda-forge/osx-64/libunistring-0.9.10-h0d85af4_0.tar.bz2#40f27dc16f73256d7b93e53c4f03d92f https://conda.anaconda.org/conda-forge/osx-64/ncurses-6.5-h5846eda_0.conda#02a888433d165c99bf09784a7b14d900 https://conda.anaconda.org/bioconda/osx-64/paml-4.10.7-h2413b67_1.tar.bz2#3b63064a2150fc52a2e29dc9dd819b16 -https://conda.anaconda.org/conda-forge/osx-64/pandoc-3.2.1-h694c41f_0.conda#41918abf697bb6544ba287ef5e15cf16 +https://conda.anaconda.org/conda-forge/osx-64/pandoc-3.3-h694c41f_0.conda#52fbc816a7bcad1d21a372c0e1cb22c4 https://conda.anaconda.org/conda-forge/osx-64/perl-5.32.1-7_h10d778d_perl5.conda#dc442e0885c3a6b65e61c61558161a9e https://conda.anaconda.org/conda-forge/osx-64/python_abi-3.10-4_cp310.conda#b15c816c5a86abcc4d1458dd63aa4c65 https://conda.anaconda.org/conda-forge/noarch/tzdata-2024a-h0c530f3_0.conda#161081fc7cec0bfda0d86d7cb595f8d8 @@ -23,10 +23,10 @@ https://conda.anaconda.org/bioconda/osx-64/vcfanno-0.3.5-h527b516_1.tar.bz2#d062 https://conda.anaconda.org/conda-forge/osx-64/xz-5.2.6-h775f41a_0.tar.bz2#a72f9d4ea13d55d745ff1ed594747f10 https://conda.anaconda.org/conda-forge/osx-64/yaml-0.2.5-h0d85af4_2.tar.bz2#d7e08fcf8259d742156188e8762b4d20 https://conda.anaconda.org/conda-forge/osx-64/bzip2-1.0.8-hfdf4475_7.conda#7ed4301d437b59045be7e051a0308211 -https://conda.anaconda.org/conda-forge/osx-64/c-ares-1.32.2-h51dda26_0.conda#be4a9b58fcf1374aeb79e873c1166e19 +https://conda.anaconda.org/conda-forge/osx-64/c-ares-1.32.3-h51dda26_0.conda#5487b45a597e142da7839941ab2494a9 https://conda.anaconda.org/conda-forge/osx-64/expat-2.6.2-h73e2aa4_0.conda#dc0882915da2ec74696ad87aa2350f27 https://conda.anaconda.org/conda-forge/osx-64/libasprintf-devel-0.22.5-h5ff76d1_2.conda#c7182eda3bc727384e2f98f4d680fa7d -https://conda.anaconda.org/conda-forge/osx-64/libcxx-18.1.8-hef8daea_0.conda#4101cde4241c92aeac310d65e6791579 +https://conda.anaconda.org/conda-forge/osx-64/libcxx-18.1.8-hef8daea_2.conda#c21d8b63b5cf5d3290d5a7aa2b028bcc https://conda.anaconda.org/conda-forge/osx-64/libedit-3.1.20191231-h0678c8f_2.tar.bz2#6016a8a1d0e63cac3de2c352cd40208b https://conda.anaconda.org/conda-forge/osx-64/libintl-0.22.5-h5ff76d1_2.conda#3fb6774cb8cdbb93a6013b67bcf9716d https://conda.anaconda.org/conda-forge/osx-64/libzlib-1.2.13-h87427d6_6.conda#c0ef3c38a80c02ae1d86588c055184fc @@ -124,14 +124,14 @@ https://conda.anaconda.org/conda-forge/osx-64/libcurl-7.87.0-haf73cf8_0.conda#c5 https://conda.anaconda.org/conda-forge/osx-64/libgettextpo-devel-0.22.5-h5ff76d1_2.conda#1e0384c52cd8b54812912e7234e66056 https://conda.anaconda.org/conda-forge/osx-64/libgfortran-5.0.0-13_2_0_h97931a8_3.conda#0b6e23a012ee7a9a5f6b244f5a92c1d5 https://conda.anaconda.org/conda-forge/osx-64/libllvm12-12.0.1-hd011deb_2.tar.bz2#f1efc65ed2e85c3f138b0c68a8f0d5b7 -https://conda.anaconda.org/conda-forge/osx-64/mpfr-4.2.1-h4f6b447_1.conda#b90df08f0deb2f58631447c1462c92a7 +https://conda.anaconda.org/conda-forge/osx-64/mpfr-4.2.1-hc80595b_2.conda#fc9b5179824146b67ad5a0b053b253ff https://conda.anaconda.org/conda-forge/osx-64/mysql-client-8.0.32-hbbbc359_0.conda#327331317af4bf9ac051bf91cbabf4c7 https://conda.anaconda.org/conda-forge/osx-64/mysql-libs-8.0.32-hc37e033_0.conda#8cb44fb9c6257c34757ba1ed723cf496 https://conda.anaconda.org/bioconda/noarch/perl-business-isbn-data-20210112.006-pl5321hdfd78af_0.tar.bz2#9b57a4df4970f5d01a1da0f1807b862e https://conda.anaconda.org/conda-forge/osx-64/perl-db_file-1.858-pl5321hac89ed1_0.tar.bz2#0c607773f4f460312bc3c73ec41e9fdb https://conda.anaconda.org/bioconda/noarch/perl-encode-locale-1.05-pl5321hdfd78af_7.tar.bz2#b431fde1d115040cf39bb54280a03dc8 https://conda.anaconda.org/bioconda/osx-64/perl-io-compress-2.201-pl5321h7133b54_2.tar.bz2#441a85c5f764b66e6589747b1496ca71 -https://conda.anaconda.org/bioconda/osx-64/perl-json-xs-2.34-pl5321hcd10b59_5.tar.bz2#64999d21a1022bc99908573c89cb7641 +https://conda.anaconda.org/bioconda/osx-64/perl-json-xs-4.03-pl5321hac4f329_3.tar.bz2#6a72470705fc97417a14b8d63e5ca022 https://conda.anaconda.org/bioconda/noarch/perl-libxml-perl-0.08-pl5321hdfd78af_3.tar.bz2#1c365765ae910890ad8787ef53dab70c https://conda.anaconda.org/bioconda/noarch/perl-lwp-mediatypes-6.04-pl5321hdfd78af_1.tar.bz2#386b035f45e9389e6e9b1a367fdd19bb https://conda.anaconda.org/bioconda/osx-64/perl-net-ssleay-1.92-pl5321h5d619eb_1.tar.bz2#98fbdfd28982449890a873d28e35d3cc @@ -156,15 +156,15 @@ https://conda.anaconda.org/bioconda/noarch/perl-bioperl-core-1.7.8-pl5321hdfd78a https://conda.anaconda.org/bioconda/noarch/perl-business-isbn-3.007-pl5321hdfd78af_0.tar.bz2#3cdaa3f73497365e08346443d81dac81 https://conda.anaconda.org/bioconda/noarch/perl-http-date-6.06-pl5321hdfd78af_0.tar.bz2#dbf1658443c214ea04fce36312d7efe3 https://conda.anaconda.org/bioconda/noarch/perl-io-socket-ssl-2.074-pl5321hdfd78af_0.tar.bz2#848d5e23136422e87522336ba1865a5b -https://conda.anaconda.org/bioconda/noarch/perl-json-4.10-pl5321hdfd78af_0.tar.bz2#05467eeb1e57206d8dddf31c3128cd00 +https://conda.anaconda.org/bioconda/noarch/perl-json-4.10-pl5321hdfd78af_1.tar.bz2#c6c43c11e14d90b836f42c611e106ea9 https://conda.anaconda.org/bioconda/noarch/perl-test-most-0.38-pl5321hdfd78af_0.tar.bz2#af484f1f44bf33bb0a6ab33e109ab8cb https://conda.anaconda.org/bioconda/osx-64/pysam-0.20.0-py310h958c131_0.tar.bz2#01dbf9c71231399855ecdde09b5d4218 https://conda.anaconda.org/conda-forge/noarch/python-tzdata-2024.1-pyhd8ed1ab_0.conda#98206ea9954216ee7540f0c773f2104d https://conda.anaconda.org/conda-forge/noarch/pytz-2024.1-pyhd8ed1ab_0.conda#3eeeeb9e4827ace8c0c1419c85d590ad https://conda.anaconda.org/conda-forge/osx-64/pyyaml-6.0.1-py310h6729b98_1.conda#d964cec3e7972e44bc4a328134b9eaf1 -https://conda.anaconda.org/conda-forge/noarch/setuptools-70.3.0-pyhd8ed1ab_0.conda#693bb57e8f92120caa956898065f3627 +https://conda.anaconda.org/conda-forge/noarch/setuptools-71.0.4-pyhd8ed1ab_0.conda#ee78ac9c720d0d02fcfd420866b82ab1 https://conda.anaconda.org/conda-forge/noarch/six-1.16.0-pyh6c4a22f_0.tar.bz2#e5f25f8dbc060e9a8d912e432202afc2 -https://conda.anaconda.org/bioconda/osx-64/viennarna-2.6.4-py310pl5321hb5a725e_0.tar.bz2#6852d7b92265aa9865387826d7b36277 +https://conda.anaconda.org/bioconda/osx-64/viennarna-2.6.4-py310pl5321h050e90c_3.tar.bz2#15a15f13e6fd883a1bca5b2a2391b3bd https://conda.anaconda.org/conda-forge/noarch/wheel-0.43.0-pyhd8ed1ab_1.conda#0b5293a157c2b5cd513dd1b03d8d3aae https://conda.anaconda.org/conda-forge/osx-64/cctools_osx-64-973.0.1-hcc6d90d_12.conda#5e2c08283fa0292e0e40776a2b9ebb1c https://conda.anaconda.org/conda-forge/osx-64/clang-12-12.0.1-default_he082bbe_4.tar.bz2#24691a609d62717554c14f2d466677dd @@ -179,7 +179,7 @@ https://conda.anaconda.org/bioconda/osx-64/perl-bio-samtools-1.43-pl5321h1f540d2 https://conda.anaconda.org/bioconda/noarch/perl-bio-searchio-hmmer-1.7.3-pl5321hdfd78af_0.tar.bz2#8251ea4d5dc4fd65272ac6700c1d8a21 https://conda.anaconda.org/bioconda/noarch/perl-file-listing-6.16-pl5321hdfd78af_0.tar.bz2#aee1982ba098bb88b04a68f6e06dd825 https://conda.anaconda.org/bioconda/noarch/perl-uri-5.12-pl5321hdfd78af_0.tar.bz2#6b571eaa643024a4bdaa12704928375f -https://conda.anaconda.org/conda-forge/noarch/pip-24.0-pyhd8ed1ab_0.conda#f586ac1e56c8638b64f9c8122a7b8a67 +https://conda.anaconda.org/conda-forge/noarch/pip-24.2-pyhd8ed1ab_0.conda#6721aef6bfe5937abe70181545dd2c51 https://conda.anaconda.org/conda-forge/noarch/python-dateutil-2.9.0-pyhd8ed1ab_0.conda#2cf4264fffb9e6eff6031c5b6884d61c https://conda.anaconda.org/bioconda/osx-64/samtools-1.16.1-h7e39424_1.tar.bz2#a65669266b75d5a7bdc5b62caceba094 https://conda.anaconda.org/bioconda/osx-64/vt-0.57721-h80f4402_11.tar.bz2#f8f720e50552c19c84a226a44494bd1f @@ -194,7 +194,7 @@ https://conda.anaconda.org/bioconda/noarch/perl-www-robotrules-6.02-pl5321hdfd78 https://conda.anaconda.org/bioconda/noarch/vcf2maf-umccr-1.6.21.20230511-hdfd78af_0.tar.bz2#ec3a03df0bce17c35b2a2d1436c718ea https://conda.anaconda.org/conda-forge/osx-64/wget-1.20.3-h52ee1ee_1.tar.bz2#c2f1a279ad03996eb33c2df49db18397 https://conda.anaconda.org/conda-forge/osx-64/clangxx-12.0.1-default_he082bbe_4.tar.bz2#02ecfcb40a46039c64fcccb703bf9f7a -https://conda.anaconda.org/bioconda/osx-64/entrez-direct-22.1-h193322a_0.tar.bz2#ad09529eef1d8e80aaecde9054da81b1 +https://conda.anaconda.org/bioconda/osx-64/entrez-direct-22.4-h193322a_0.tar.bz2#88d15c92752c1358f80caa7f40ee7274 https://conda.anaconda.org/conda-forge/osx-64/gsl-2.7-h93259b0_0.tar.bz2#b4942b1ee2a52fd67f446074488d774d https://conda.anaconda.org/conda-forge/osx-64/numpy-1.26.4-py310h4bfa8fc_0.conda#cd6a2298387f558c9ea70ee73a189791 https://conda.anaconda.org/bioconda/noarch/perl-bio-tools-phylo-paml-1.7.3-pl5321hdfd78af_3.tar.bz2#6d6d8eb0deb2e754811767358989c8df @@ -209,10 +209,10 @@ https://conda.anaconda.org/conda-forge/noarch/compiler-rt_osx-64-12.0.1-hd3f61c9 https://conda.anaconda.org/bioconda/osx-64/cyvcf2-0.30.16-py310h74db330_1.tar.bz2#cc24a8d89c29d2732193d6b74589893f https://conda.anaconda.org/conda-forge/osx-64/pandas-2.2.2-py310hbf2a7f0_1.conda#15f6e4d6b8904a0751420bfe00605d31 https://conda.anaconda.org/bioconda/noarch/perl-libwww-perl-6.67-pl5321hdfd78af_0.tar.bz2#9493077e9e1dae0017f0d4cd9baf7de6 -https://conda.anaconda.org/bioconda/osx-64/pybedtools-0.10.0-py310h0b3aad1_1.tar.bz2#ade72e96268dba2ca0ba1f728dfe4c43 +https://conda.anaconda.org/bioconda/osx-64/pybedtools-0.10.0-py310h0b3aad1_2.tar.bz2#2674eda3d1eb4d1445dfcc11ae51b28b https://conda.anaconda.org/conda-forge/osx-64/scipy-1.14.0-py310h35d8cac_1.conda#c261d35d90ab2d683b13d140edd907af https://conda.anaconda.org/conda-forge/osx-64/compiler-rt-12.0.1-he01351e_0.tar.bz2#aa2cb3794dae4a09f19c3b7169b5df1f -https://conda.anaconda.org/pcgr/noarch/pcgr-2.0.2-py_0.tar.bz2#5bc257e15d72598686e5a627889a2d2d +https://conda.anaconda.org/pcgr/noarch/pcgr-2.0.3-py_0.tar.bz2#e96d85e27eb8bcb1529430b296e12566 https://conda.anaconda.org/bioconda/noarch/perl-xml-dom-1.46-pl5321hdfd78af_1.tar.bz2#45b7ce435727456727f45b3e2121b23b https://conda.anaconda.org/bioconda/osx-64/t-coffee-12.00.7fb08c2-h26a2512_0.tar.bz2#fe6f3532da0e9d3868b58ecd07f33744 https://conda.anaconda.org/bioconda/noarch/vcf2tsvpy-0.6.1-pyhda70652_0.tar.bz2#cb9612a58cefb7e2a144c759027c0a94 diff --git a/conda/env/lock/pcgrr-linux-64.lock b/conda/env/lock/pcgrr-linux-64.lock index ba06644d..f431b93d 100644 --- a/conda/env/lock/pcgrr-linux-64.lock +++ b/conda/env/lock/pcgrr-linux-64.lock @@ -1,6 +1,6 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: ca17b4d0eef40be5eb76dd29a39e02f3b1ce64802f5fbe4040ce833d7a80b493 +# input_hash: 776c5d589bc013f819b3e66180d6b0657893538546724852cd9bc4128592a63d @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 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