0.1.2 2024-XX-XX

Breaking changes

ICF metadata format version bumped to ensure long-term compatility between numpy 1.26.x and numpy >= 2. Existing ICFs will need to be recreated.

0.1.1 2024-06-19

Maintenance release:

Pin numpy to < 2
Pin Zarr to < 3

0.1.0 2024-06-10

Initial production-ready version.
Add -Q/--no-progress flag to CLI
Change num-partitions argument in dexplode-init and dencode-init to a named option.

0.0.10 2024-05-15

Change output format of dexplode-init and dencode-init
Bugfix for mac progress, and change of multiprocessing startup strategy.

0.0.9 2024-05-02

Change on-disk format for explode and schema
Support older tabix indexes
Fix some bugs in explode

0.0.8 2024-04-30

Change on-disk format of distributed encode and simplify
Check for all partitions nominally completed encoding before doing anything destructive in dencode-finalise

0.0.6 2024-04-24

Only use NOSHUFFLE by default on call_genotype and bool arrays.
Add initial implementation of distributed encode

0.0.5 2024-04-17

Fix bug in schema handling (compressor settings ignored)
Move making ICF field partition directories into per-partition processing. Remove progress on the init mkdirs step.
Turn off progress monitor on dexplode-partition
Fix empty partition bug

0.0.4 2024-04-08

Fix bug in --max-memory handling, and argument to a string like 10G
Add compressor choice in explode, switch default to zstd
Run mkdirs in parallel and provide progress
Change dimension separator to "/" in Zarr
Update min Zarr version to 2.17

0.0.3 2024-03-28

Various refinements to the CLI

0.0.2 2024-03-27

Merged 1D and 2D encode steps into one, and change rate reporting to bytes
Add --max-memory for encode
Change chunk_width to samples_chunk_size and chunk_length to variants_chunk_size
Various updates to the intermediate chunked format, with breaking change to version 0.2
Add distributed explode commands