From 7dc5b249cbf097e49fecdbe688b0132c84d6a706 Mon Sep 17 00:00:00 2001
From: Mira <86979912+mira-miracoli@users.noreply.github.com>
Date: Mon, 30 Oct 2023 17:27:36 +0100
Subject: [PATCH] Create interactivetool_genenotebook.xml (#201)

---
 .../interactivetool_genenotebook.xml          | 40 +++++++++++++++++++
 1 file changed, 40 insertions(+)
 create mode 100644 tools/interactive/interactivetool_genenotebook.xml

diff --git a/tools/interactive/interactivetool_genenotebook.xml b/tools/interactive/interactivetool_genenotebook.xml
new file mode 100644
index 000000000000..d2427c55ecef
--- /dev/null
+++ b/tools/interactive/interactivetool_genenotebook.xml
@@ -0,0 +1,40 @@
+<tool id="interactive_tool_genenotebook" tool_type="interactive" name="GeneNoteBook" version="0.4.3" profile="22.01">
+    <description>viewer</description>
+    <requirements>
+        <container type="docker">quay.io/biocontainers/genoboo:0.4.3--h9f5acd7_0</container>
+    </requirements>
+    <entry_points>
+        <entry_point name="GeneNoteBook Interactive Tool" requires_domain="True">
+            <port>3000</port>
+            <url>/</url>
+        </entry_point>
+    </entry_points>
+    <command><![CDATA[
+        tar -xf '${input}' mongo_db
+
+        &&
+
+        ln -s mongo_db data
+
+        &&
+
+        genoboo run -d ./
+    ]]>
+    </command>
+    <inputs>
+        <param name="input" type="data" format="genenotebook" label="GeneNoteBook dataset" help="Produced with the 'Build a GeneNoteBook' tool"/>
+    </inputs>
+    <outputs>
+        <data name="output" format="txt" />
+    </outputs>
+    <tests>
+    </tests>
+    <help><![CDATA[
+        Run a GeneNoteBook displaying the content of GeneNoteBook dataset generated by the "Build a GeneNoteBook" tool.
+
+        The current version is based on a forked version of GeneNoteBook including several various improvements (https://github.com/gogepp/genoboo/).
+    ]]></help>
+    <citations>
+        <citation type="doi">10.1093/bioinformatics/btz491</citation>
+    </citations>
+</tool>