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OOM depending on rmm version #289

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gouinK opened this issue Nov 5, 2024 · 1 comment
Open

OOM depending on rmm version #289

gouinK opened this issue Nov 5, 2024 · 1 comment

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@gouinK
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gouinK commented Nov 5, 2024

Thank you for bringing this fantastic package to the community.

I inadvertently updated rmm and pylibraft-cu12 to version 24.10.0 and found that datasets with ~500k cells that I had previously had no problem running rsc.pp.neighbors on were consistently OOM'ng. When I downgraded those packages back to 24.2.0, I could run the datasets with no problem again. It seems that version 24.8.* also causes this OOM behavior. I am using rapids-single-cell version 0.10.10. Do you have any thoughts on this or suggestions as to which version is preferable in terms of accuracy of nearest neighbor graphs?

Thank you for your help and input!

@Intron7
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Intron7 commented Nov 5, 2024

I haven't really looked at this and personally didn't encounter the issue yet. What GPU are you using? Can you reporduce the issue with the 500k testdataset?

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