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Extend to phenograph #49

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mbuttner opened this issue Sep 6, 2023 · 2 comments
Open

Extend to phenograph #49

mbuttner opened this issue Sep 6, 2023 · 2 comments
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enhancement New feature or request

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@mbuttner
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mbuttner commented Sep 6, 2023

Phenograph offers a number of different functions designed for cytometry data, such as clustering and batch correction in Python. A wrapper for Phenograph functions would complement the pytometry package.

@mbuttner mbuttner added the enhancement New feature or request label Sep 6, 2023
@burtonrj
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burtonrj commented Sep 7, 2023

There is also PARC clustering which is a slightly optimised version of phonograph: https://academic.oup.com/bioinformatics/article/36/9/2778/5714737

I ported it here in cytocluster: https://github.com/burtonrj/CytoCluster/blob/main/cytocluster/methods/parc.py

Phenograph should be priority but maybe afterwards its worth thinking about PARC

@mbuttner
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mbuttner commented Sep 7, 2023

Thanks for bringing this up! I agree that Phenograph should be prioritized.

@burtonrj burtonrj self-assigned this Oct 5, 2023
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