.pre-commit-config.yaml

ci:
  skip: [mypy] # too big env

repos:
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v5.0.0
    hooks:
      - id: trailing-whitespace
      - id: end-of-file-fixer
      - id: check-added-large-files
      - id: check-case-conflict
      - id: check-toml
      - id: check-yaml
      - id: check-merge-conflict
      - id: detect-private-key
      - id: no-commit-to-branch
        args: ["--branch=main"]
  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: v0.7.4
    hooks:
      - id: ruff
        types_or: [python, pyi, jupyter]
        args: ["--fix"]
      - id: ruff-format
        types_or: [python, pyi, jupyter]
  - repo: https://github.com/pre-commit/mirrors-mypy
    rev: v1.13.0
    hooks:
      - id: mypy
        args: []
        additional_dependencies:
          - anndata
          - scanpy
          - matplotlib
          - matplotlib-inline
          - pytest
  - repo: https://github.com/pre-commit/mirrors-prettier
    rev: v4.0.0-alpha.8
    hooks:
      - id: prettier