diff --git a/.github/workflows/test_component.yml b/.github/workflows/test_component.yml
index 30d8612..c4ec993 100644
--- a/.github/workflows/test_component.yml
+++ b/.github/workflows/test_component.yml
@@ -97,7 +97,7 @@ jobs:
 
       - name: Fix nf-test launching jvm with too much memory
         run: |
-          sed -i 's/-Xmx10G//' $(which nf-test)
+          sed -i 's/-Xmx10G/-Xmx4G/' $(which nf-test)
 
       - name: Compute test run UID
         uses: actions/github-script@60a0d83039c74a4aee543508d2ffcb1c3799cdea # v7.0.1
diff --git a/modules/nf-neuro/reconst/fodf/main.nf b/modules/nf-neuro/reconst/fodf/main.nf
index 7deb635..8e56439 100644
--- a/modules/nf-neuro/reconst/fodf/main.nf
+++ b/modules/nf-neuro/reconst/fodf/main.nf
@@ -1,31 +1,31 @@
 
 process RECONST_FODF {
     tag "$meta.id"
-    label 'process_single'
+    label 'process_high'
 
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://scil.usherbrooke.ca/containers/scilus_2.0.0.sif':
-        'scilus/scilus:2.0.0' }"
+        'https://scil.usherbrooke.ca/containers/scilus_2.0.2.sif':
+        'scilus/scilus:2.0.2' }"
 
     input:
         tuple val(meta), path(dwi), path(bval), path(bvec), path(mask), path(fa), path(md), path(wm_frf), path(gm_frf), path(csf_frf)
 
     output:
-        tuple val(meta), path("*fodf.nii.gz")           , emit: fodf, optional: true
-        tuple val(meta), path("*wm_fodf.nii.gz")        , emit: wm_fodf, optional: true
-        tuple val(meta), path("*gm_fodf.nii.gz")        , emit: gm_fodf, optional: true
-        tuple val(meta), path("*csf_fodf.nii.gz")       , emit: csf_fodf, optional: true
-        tuple val(meta), path("*vf.nii.gz")             , emit: vf, optional: true
-        tuple val(meta), path("*vf_rgb.nii.gz")         , emit: vf_rgb, optional: true
-        tuple val(meta), path("*peaks.nii.gz")          , emit: peaks, optional: true
-        tuple val(meta), path("*peak_values.nii.gz")    , emit: peak_values, optional: true
-        tuple val(meta), path("*peak_indices.nii.gz")   , emit: peak_indices, optional: true
-        tuple val(meta), path("*afd_max.nii.gz")        , emit: afd_max, optional: true
-        tuple val(meta), path("*afd_total.nii.gz")      , emit: afd_total, optional: true
-        tuple val(meta), path("*afd_sum.nii.gz")        , emit: afd_sum, optional: true
-        tuple val(meta), path("*nufo.nii.gz")           , emit: nufo, optional: true
-        tuple val(meta), path("*ventricles_mask.nii.gz"), emit: vent_mask, optional: true
-        path "versions.yml"                             , emit: versions
+        tuple val(meta), path("*__fodf.nii.gz")           , emit: fodf, optional: true
+        tuple val(meta), path("*__wm_fodf.nii.gz")        , emit: wm_fodf, optional: true
+        tuple val(meta), path("*__gm_fodf.nii.gz")        , emit: gm_fodf, optional: true
+        tuple val(meta), path("*__csf_fodf.nii.gz")       , emit: csf_fodf, optional: true
+        tuple val(meta), path("*__vf.nii.gz")             , emit: vf, optional: true
+        tuple val(meta), path("*__vf_rgb.nii.gz")         , emit: vf_rgb, optional: true
+        tuple val(meta), path("*__peaks.nii.gz")          , emit: peaks, optional: true
+        tuple val(meta), path("*__peak_values.nii.gz")    , emit: peak_values, optional: true
+        tuple val(meta), path("*__peak_indices.nii.gz")   , emit: peak_indices, optional: true
+        tuple val(meta), path("*__afd_max.nii.gz")        , emit: afd_max, optional: true
+        tuple val(meta), path("*__afd_total.nii.gz")      , emit: afd_total, optional: true
+        tuple val(meta), path("*__afd_sum.nii.gz")        , emit: afd_sum, optional: true
+        tuple val(meta), path("*__nufo.nii.gz")           , emit: nufo, optional: true
+        tuple val(meta), path("*__ventricles_mask.nii.gz"), emit: vent_mask, optional: true
+        path "versions.yml"                               , emit: versions
 
     when:
     task.ext.when == null || task.ext.when
@@ -40,7 +40,7 @@ process RECONST_FODF {
     def sh_order = task.ext.sh_order ? "--sh_order " + task.ext.sh_order : ""
     def sh_basis = task.ext.sh_basis ? "--sh_basis " + task.ext.sh_basis : ""
     def set_method = task.ext.method ? task.ext.method : "ssst"
-    def processes = task.ext.processes ? "--processes " + task.ext.processes : ""
+    def processes = task.cpus > 1 ? "--processes " + task.cpus : ""
     def set_mask = mask ? "--mask $mask" : ""
     def relative_threshold = task.ext.relative_threshold ? "--rt " + task.ext.relative_threshold : ""
     def fodf_metrics_a_factor = task.ext.fodf_metrics_a_factor ? task.ext.fodf_metrics_a_factor : 2.0
@@ -122,13 +122,13 @@ process RECONST_FODF {
             $set_mask $sh_basis $absolute_peaks \
             $peaks $peak_values $peak_indices \
             $afd_max $afd_total \
-            $afd_sum $nufo \
+            $afd_sum $nufo $processes \
             $relative_threshold --not_all --at \${a_threshold}
     fi
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        scilpy: 2.0.0
+        scilpy: \$(pip list | grep scilpy | tr -s ' ' | cut -d' ' -f2)
     END_VERSIONS
     """
 
@@ -159,7 +159,7 @@ process RECONST_FODF {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        scilpy: 2.0.0
+        scilpy: \$(pip list | grep scilpy | tr -s ' ' | cut -d' ' -f2)
     END_VERSIONS
     """
 }
diff --git a/modules/nf-neuro/reconst/fodf/meta.yml b/modules/nf-neuro/reconst/fodf/meta.yml
index 1f9aca2..ab3c5d7 100644
--- a/modules/nf-neuro/reconst/fodf/meta.yml
+++ b/modules/nf-neuro/reconst/fodf/meta.yml
@@ -14,7 +14,7 @@ keywords:
   - Local Model
   - Reconst
 tools:
-  - "Scilpy":
+  - "scilpy":
       description: "The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox."
       homepage: "https://github.com/scilus/scilpy.git"
 
@@ -146,6 +146,11 @@ output:
       description: Number of Fiber Orientation (NuFO) map.
       pattern: "*nufo.nii.gz"
 
+  - vent_mask:
+      type: file
+      description: Ventricule mask estimated from an MD and FA threshold.
+      pattern: "*ventricles_mask.nii.gz"
+
   - versions:
       type: file
       description: File containing software versions
diff --git a/modules/nf-neuro/reconst/fodf/tests/main.nf.test b/modules/nf-neuro/reconst/fodf/tests/main.nf.test
index 76f38ec..44679ed 100644
--- a/modules/nf-neuro/reconst/fodf/tests/main.nf.test
+++ b/modules/nf-neuro/reconst/fodf/tests/main.nf.test
@@ -13,16 +13,22 @@ nextflow_process {
     tag "subworkflows/load_test_data"
 
     setup {
-            run("LOAD_TEST_DATA", alias: "LOAD_DATA") {
-                script "../../../../../subworkflows/nf-neuro/load_test_data/main.nf"
-                process {
-                    """
-                    input[0] = Channel.from( [ "processing.zip" , "commit_amico.zip" ] )
-                    input[1] = "test.load-test-data"
-                    """
-                }
+        run("LOAD_TEST_DATA", alias: "LOAD_DATA") {
+            script "../../../../../subworkflows/nf-neuro/load_test_data/main.nf"
+            process {
+                """
+                input[0] = Channel.from( [
+                    "DWIss2000-dir60.zip",
+                    "DWIms1000-2000-dir32-60.zip" ,
+                    "segmentation.zip",
+                    "dti.zip",
+                    "responses.zip"
+                ] )
+                input[1] = "test.load-test-data"
+                """
             }
         }
+    }
 
     test("reconst - fodf") {
 
@@ -33,23 +39,43 @@ nextflow_process {
                 """
                 ch_split_test_data = LOAD_DATA.out.test_data_directory
                     .branch{
-                        ssst: it.simpleName == "processing"
-                        msmt: it.simpleName == "commit_amico"
+                        ssst: it.simpleName == "DWIss2000-dir60"
+                        segmentation: it.simpleName == "segmentation"
+                        dti: it.simpleName == "dti"
+                        responses: it.simpleName == "responses"
                     }
-                input[0] = ch_split_test_data.ssst.map{
+                ch_dwi = ch_split_test_data.ssst.map{
                     test_data_directory -> [
-                        [ id:'test', single_end:false ],
+                        [ id:'test' ],
                         file("\${test_data_directory}/dwi.nii.gz"),
                         file("\${test_data_directory}/dwi.bval"),
-                        file("\${test_data_directory}/dwi.bvec"),
-                        file("\${test_data_directory}/cc.nii.gz"),
+                        file("\${test_data_directory}/dwi.bvec")
+                    ]
+                }
+                ch_mask = ch_split_test_data.segmentation.map{
+                    test_data_directory -> [
+                        [ id:'test' ],
+                        file("\${test_data_directory}/brainmask/brainmask.nii.gz")
+                    ]
+                }
+                ch_metrics = ch_split_test_data.dti.map{
+                    test_data_directory -> [
+                        [ id:'test' ],
                         file("\${test_data_directory}/fa.nii.gz"),
-                        file("\${test_data_directory}/md.nii.gz"),
-                        file("\${test_data_directory}/frf.txt"),
-                        [],
-                        []
+                        file("\${test_data_directory}/md.nii.gz")
+                    ]
+                }
+                ch_response = ch_split_test_data.responses.map{
+                    test_data_directory -> [
+                        [ id:'test' ],
+                        file("\${test_data_directory}/DWIss1000-dir32.txt")
                     ]
                 }
+                input[0] = ch_dwi
+                    .join(ch_mask)
+                    .join(ch_metrics)
+                    .join(ch_response)
+                    .map{ it + [[], []] }
                 """
             }
         }
@@ -57,7 +83,16 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out).match() }
+                { assert snapshot(
+                    niftiMD5SUM(process.out.fodf.get(0).get(1), 6),
+                    file(process.out.peaks.get(0).get(1)).name,
+                    niftiMD5SUM(process.out.peak_values.get(0).get(1), 6),
+                    file(process.out.peak_indices.get(0).get(1)).name,
+                    process.out.afd_max,
+                    process.out.afd_total,
+                    niftiMD5SUM(process.out.afd_sum.get(0).get(1), 6),
+                    process.out.nufo,
+                    process.out.versions).match()}
             )
         }
 
@@ -72,62 +107,43 @@ nextflow_process {
                 """
                 ch_split_test_data = LOAD_DATA.out.test_data_directory
                     .branch{
-                        ssst: it.simpleName == "processing"
-                        msmt: it.simpleName == "commit_amico"
+                        msmt: it.simpleName == "DWIms1000-2000-dir32-60"
+                        segmentation: it.simpleName == "segmentation"
+                        dti: it.simpleName == "dti"
+                        responses: it.simpleName == "responses"
                     }
-                input[0] = ch_split_test_data.ssst.map{
+                ch_dwi = ch_split_test_data.msmt.map{
                     test_data_directory -> [
-                        [ id:'test', single_end:false ],
+                        [ id:'test' ],
                         file("\${test_data_directory}/dwi.nii.gz"),
                         file("\${test_data_directory}/dwi.bval"),
-                        file("\${test_data_directory}/dwi.bvec"),
-                        file("\${test_data_directory}/cc.nii.gz"),
-                        file("\${test_data_directory}/fa.nii.gz"),
-                        file("\${test_data_directory}/md.nii.gz"),
-                        file("\${test_data_directory}/frf.txt"),
-                        [],
-                        []
+                        file("\${test_data_directory}/dwi.bvec")
                     ]
                 }
-                """
-            }
-        }
-
-        then {
-            assertAll(
-                { assert process.success },
-                { assert snapshot(process.out).match() }
-            )
-        }
-
-    }
-
-    test("reconst - fodf_no_mask") {
-
-        config "./nextflow.config"
-
-        when {
-            process {
-                """
-                ch_split_test_data = LOAD_DATA.out.test_data_directory
-                    .branch{
-                        ssst: it.simpleName == "processing"
-                        msmt: it.simpleName == "commit_amico"
-                    }
-                input[0] = ch_split_test_data.ssst.map{
+                ch_mask = ch_split_test_data.segmentation.map{
                     test_data_directory -> [
-                        [ id:'test', single_end:false ],
-                        file("\${test_data_directory}/dwi.nii.gz"),
-                        file("\${test_data_directory}/dwi.bval"),
-                        file("\${test_data_directory}/dwi.bvec"),
-                        [],
+                        [ id:'test' ],
+                        file("\${test_data_directory}/brainmask/brainmask.nii.gz")
+                    ]
+                }
+                ch_metrics = ch_split_test_data.dti.map{
+                    test_data_directory -> [
+                        [ id:'test' ],
                         file("\${test_data_directory}/fa.nii.gz"),
-                        file("\${test_data_directory}/md.nii.gz"),
-                        file("\${test_data_directory}/frf.txt"),
-                        [],
-                        []
+                        file("\${test_data_directory}/md.nii.gz")
+                    ]
+                }
+                ch_response = ch_split_test_data.responses.map{
+                    test_data_directory -> [
+                        [ id:'test' ],
+                        file("\${test_data_directory}/DWIss1000-dir32.txt")
                     ]
                 }
+                input[0] = ch_dwi
+                    .join(ch_mask)
+                    .join(ch_metrics)
+                    .join(ch_response)
+                    .map{ it + [[], []] }
                 """
             }
         }
@@ -135,7 +151,16 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out).match() }
+                { assert snapshot(
+                    niftiMD5SUM(process.out.fodf.get(0).get(1), 6),
+                    file(process.out.peaks.get(0).get(1)).name,
+                    niftiMD5SUM(process.out.peak_values.get(0).get(1), 6),
+                    file(process.out.peak_indices.get(0).get(1)).name,
+                    process.out.afd_max,
+                    process.out.afd_total,
+                    niftiMD5SUM(process.out.afd_sum.get(0).get(1), 6),
+                    process.out.nufo,
+                    process.out.versions).match()}
             )
         }
 
@@ -150,23 +175,43 @@ nextflow_process {
                 """
                 ch_split_test_data = LOAD_DATA.out.test_data_directory
                     .branch{
-                        ssst: it.simpleName == "processing"
-                        msmt: it.simpleName == "commit_amico"
+                        ssst: it.simpleName == "DWIss2000-dir60"
+                        segmentation: it.simpleName == "segmentation"
+                        dti: it.simpleName == "dti"
+                        responses: it.simpleName == "responses"
                     }
-                input[0] = ch_split_test_data.ssst.map{
+                ch_dwi = ch_split_test_data.ssst.map{
                     test_data_directory -> [
-                        [ id:'test', single_end:false ],
+                        [ id:'test' ],
                         file("\${test_data_directory}/dwi.nii.gz"),
                         file("\${test_data_directory}/dwi.bval"),
-                        file("\${test_data_directory}/dwi.bvec"),
-                        file("\${test_data_directory}/cc.nii.gz"),
+                        file("\${test_data_directory}/dwi.bvec")
+                    ]
+                }
+                ch_mask = ch_split_test_data.segmentation.map{
+                    test_data_directory -> [
+                        [ id:'test' ],
+                        file("\${test_data_directory}/brainmask/brainmask.nii.gz")
+                    ]
+                }
+                ch_metrics = ch_split_test_data.dti.map{
+                    test_data_directory -> [
+                        [ id:'test' ],
                         file("\${test_data_directory}/fa.nii.gz"),
-                        file("\${test_data_directory}/md.nii.gz"),
-                        file("\${test_data_directory}/frf.txt"),
-                        [],
-                        []
+                        file("\${test_data_directory}/md.nii.gz")
+                    ]
+                }
+                ch_response = ch_split_test_data.responses.map{
+                    test_data_directory -> [
+                        [ id:'test' ],
+                        file("\${test_data_directory}/DWIss1000-dir32.txt")
                     ]
                 }
+                input[0] = ch_dwi
+                    .join(ch_mask)
+                    .join(ch_metrics)
+                    .join(ch_response)
+                    .map{ it + [[], []] }
                 """
             }
         }
@@ -174,7 +219,9 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out).match() }
+                { assert snapshot(
+                    niftiMD5SUM(process.out.fodf.get(0).get(1), 6),
+                    process.out.versions).match()}
             )
         }
 
@@ -189,32 +236,52 @@ nextflow_process {
                 """
                 ch_split_test_data = LOAD_DATA.out.test_data_directory
                     .branch{
-                        ssst: it.simpleName == "processing"
-                        msmt: it.simpleName == "commit_amico"
+                        msmt: it.simpleName == "DWIms1000-2000-dir32-60"
+                        segmentation: it.simpleName == "segmentation"
+                        dti: it.simpleName == "dti"
+                        responses: it.simpleName == "responses"
                     }
-                input[0] = ch_split_test_data.msmt.map{
+                ch_dwi = ch_split_test_data.msmt.map{
                     test_data_directory -> [
-                        [ id:'test', single_end:false ],
+                        [ id:'test' ],
                         file("\${test_data_directory}/dwi.nii.gz"),
                         file("\${test_data_directory}/dwi.bval"),
-                        file("\${test_data_directory}/dwi.bvec"),
-                        file("\${test_data_directory}/mask.nii.gz"),
+                        file("\${test_data_directory}/dwi.bvec")
+                    ]
+                }
+                ch_mask = ch_split_test_data.segmentation.map{
+                    test_data_directory -> [
+                        [ id:'test' ],
+                        file("\${test_data_directory}/brainmask/brainmask.nii.gz")
+                    ]
+                }
+                ch_metrics = ch_split_test_data.dti.map{
+                    test_data_directory -> [
+                        [ id:'test' ],
                         file("\${test_data_directory}/fa.nii.gz"),
-                        file("\${test_data_directory}/md.nii.gz"),
-                        file("\${test_data_directory}/wm_frf.txt"),
-                        file("\${test_data_directory}/gm_frf.txt"),
-                        file("\${test_data_directory}/csf_frf.txt")
-
+                        file("\${test_data_directory}/md.nii.gz")
                     ]
                 }
+                ch_response = ch_split_test_data.responses.map{
+                    test_data_directory -> [
+                        [ id:'test' ],
+                        file("\${test_data_directory}/DWIms1000-2000-dir32-60_wm.txt"),
+                        file("\${test_data_directory}/DWIms1000-2000-dir32-60_gm.txt"),
+                        file("\${test_data_directory}/DWIms1000-2000-dir32-60_csf.txt")
+                    ]
+                }
+                input[0] = ch_dwi
+                    .join(ch_mask)
+                    .join(ch_metrics)
+                    .join(ch_response)
                 """
             }
         }
-
         then {
             assertAll(
                 { assert process.success },
                 { assert snapshot(
+                    file(process.out.fodf.get(0).get(1)).name,
                     file(process.out.wm_fodf.get(0).get(1)).name,
                     file(process.out.gm_fodf.get(0).get(1)).name,
                     file(process.out.csf_fodf.get(0).get(1)).name,
@@ -226,7 +293,9 @@ nextflow_process {
                     file(process.out.afd_max.get(0).get(1)).name,
                     file(process.out.afd_total.get(0).get(1)).name,
                     file(process.out.afd_sum.get(0).get(1)).name,
-                    file(process.out.nufo.get(0).get(1)).name).match() }
+                    file(process.out.nufo.get(0).get(1)).name,
+                    process.out.vent_mask,
+                    process.out.versions).match()}
             )
         }
 
diff --git a/modules/nf-neuro/reconst/fodf/tests/main.nf.test.snap b/modules/nf-neuro/reconst/fodf/tests/main.nf.test.snap
index 7c62f2a..62f4d2d 100644
--- a/modules/nf-neuro/reconst/fodf/tests/main.nf.test.snap
+++ b/modules/nf-neuro/reconst/fodf/tests/main.nf.test.snap
@@ -1,6 +1,7 @@
 {
     "reconst - fodf_msmt": {
         "content": [
+            "test__fodf.nii.gz",
             "test__wm_fodf.nii.gz",
             "test__gm_fodf.nii.gz",
             "test__csf_fodf.nii.gz",
@@ -12,716 +13,118 @@
             "test__afd_max.nii.gz",
             "test__afd_total.nii.gz",
             "test__afd_sum.nii.gz",
-            "test__nufo.nii.gz"
+            "test__nufo.nii.gz",
+            [
+                [
+                    {
+                        "id": "test"
+                    },
+                    "test__ventricles_mask.nii.gz:md5,848409863defb87ed4e29e8e50e5dbc8"
+                ]
+            ],
+            [
+                "versions.yml:md5,f80e57f2c24a4a1fd403de1d132ec6e7"
+            ]
         ],
         "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-05-07T17:04:27.988184"
+        "timestamp": "2024-11-12T20:01:53.02243736"
     },
     "reconst - fodf": {
         "content": [
-            {
-                "0": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__fodf.nii.gz:md5,c45f0391a462d358930809502dd2da15"
-                    ]
-                ],
-                "1": [
-                    
-                ],
-                "10": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_total.nii.gz:md5,9bac465d58b8662c3dce2c4937300a5a"
-                    ]
-                ],
-                "11": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_sum.nii.gz:md5,a849e3eb8c67cc176e88daca01669eef"
-                    ]
-                ],
-                "12": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__nufo.nii.gz:md5,711f0ee8d01e71166099ffdf4c684b5f"
-                    ]
-                ],
-                "13": [
-                    
-                ],
-                "14": [
-                    "versions.yml:md5,8f5a73278d63aac3bf8073c5d0ef488b"
-                ],
-                "2": [
-                    
-                ],
-                "3": [
-                    
-                ],
-                "4": [
-                    
-                ],
-                "5": [
-                    
-                ],
-                "6": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peaks.nii.gz:md5,fbc8af94bce991a6ebe3bfb837d39a52"
-                    ]
-                ],
-                "7": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peak_values.nii.gz:md5,4fd4a44c18544413c0e9bb672e60f709"
-                    ]
-                ],
-                "8": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peak_indices.nii.gz:md5,d39ad843a7b86ac7042c44b87356e68b"
-                    ]
-                ],
-                "9": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_max.nii.gz:md5,96b7a2dbab6306ca053b45bfad21be55"
-                    ]
-                ],
-                "afd_max": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_max.nii.gz:md5,96b7a2dbab6306ca053b45bfad21be55"
-                    ]
-                ],
-                "afd_sum": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_sum.nii.gz:md5,a849e3eb8c67cc176e88daca01669eef"
-                    ]
-                ],
-                "afd_total": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_total.nii.gz:md5,9bac465d58b8662c3dce2c4937300a5a"
-                    ]
-                ],
-                "csf_fodf": [
-                    
-                ],
-                "fodf": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__fodf.nii.gz:md5,c45f0391a462d358930809502dd2da15"
-                    ]
-                ],
-                "gm_fodf": [
-                    
-                ],
-                "nufo": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__nufo.nii.gz:md5,711f0ee8d01e71166099ffdf4c684b5f"
-                    ]
-                ],
-                "peak_indices": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peak_indices.nii.gz:md5,d39ad843a7b86ac7042c44b87356e68b"
-                    ]
-                ],
-                "peak_values": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peak_values.nii.gz:md5,4fd4a44c18544413c0e9bb672e60f709"
-                    ]
-                ],
-                "peaks": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peaks.nii.gz:md5,fbc8af94bce991a6ebe3bfb837d39a52"
-                    ]
-                ],
-                "vent_mask": [
-                    
-                ],
-                "versions": [
-                    "versions.yml:md5,8f5a73278d63aac3bf8073c5d0ef488b"
-                ],
-                "vf": [
-                    
-                ],
-                "vf_rgb": [
-                    
-                ],
-                "wm_fodf": [
-                    
+            "test__fodf.nii.gz:md5:header,b6ba80bf9e8830bc10f9b8b091b9b34b,data,24baf44d4f5d75e6156e7d448eb9393a",
+            "test__peaks.nii.gz",
+            "test__peak_values.nii.gz:md5:header,f55799c7ffe93b1148a313f0aade0f5f,data,2449c61f84ea3f605c1787e9d83338d1",
+            "test__peak_indices.nii.gz",
+            [
+                [
+                    {
+                        "id": "test"
+                    },
+                    "test__afd_max.nii.gz:md5,9dbb9a0ce187b41a2a102fa3d3ca8ab7"
+                ]
+            ],
+            [
+                [
+                    {
+                        "id": "test"
+                    },
+                    "test__afd_total.nii.gz:md5,01a6fc27716a79cb57e1faed7ff8297b"
                 ]
-            }
+            ],
+            "test__afd_sum.nii.gz:md5:header,c9e720b9a8acfe45a617e6486ebb8de0,data,ee3aff13954be703a5cf4ab604c8eafa",
+            [
+                [
+                    {
+                        "id": "test"
+                    },
+                    "test__nufo.nii.gz:md5,458bdae89a9918b2dfc13f154bde5e1b"
+                ]
+            ],
+            [
+                "versions.yml:md5,f80e57f2c24a4a1fd403de1d132ec6e7"
+            ]
         ],
         "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-05-01T19:21:03.487368"
+        "timestamp": "2024-11-14T20:46:21.956053982"
     },
     "reconst - fodf_no_metrics": {
         "content": [
-            {
-                "0": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__fodf.nii.gz:md5,c45f0391a462d358930809502dd2da15"
-                    ]
-                ],
-                "1": [
-                    
-                ],
-                "10": [
-                    
-                ],
-                "11": [
-                    
-                ],
-                "12": [
-                    
-                ],
-                "13": [
-                    
-                ],
-                "14": [
-                    "versions.yml:md5,8f5a73278d63aac3bf8073c5d0ef488b"
-                ],
-                "2": [
-                    
-                ],
-                "3": [
-                    
-                ],
-                "4": [
-                    
-                ],
-                "5": [
-                    
-                ],
-                "6": [
-                    
-                ],
-                "7": [
-                    
-                ],
-                "8": [
-                    
-                ],
-                "9": [
-                    
-                ],
-                "afd_max": [
-                    
-                ],
-                "afd_sum": [
-                    
-                ],
-                "afd_total": [
-                    
-                ],
-                "csf_fodf": [
-                    
-                ],
-                "fodf": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__fodf.nii.gz:md5,c45f0391a462d358930809502dd2da15"
-                    ]
-                ],
-                "gm_fodf": [
-                    
-                ],
-                "nufo": [
-                    
-                ],
-                "peak_indices": [
-                    
-                ],
-                "peak_values": [
-                    
-                ],
-                "peaks": [
-                    
-                ],
-                "vent_mask": [
-                    
-                ],
-                "versions": [
-                    "versions.yml:md5,8f5a73278d63aac3bf8073c5d0ef488b"
-                ],
-                "vf": [
-                    
-                ],
-                "vf_rgb": [
-                    
-                ],
-                "wm_fodf": [
-                    
-                ]
-            }
+            "test__fodf.nii.gz:md5:header,b6ba80bf9e8830bc10f9b8b091b9b34b,data,24baf44d4f5d75e6156e7d448eb9393a",
+            [
+                "versions.yml:md5,f80e57f2c24a4a1fd403de1d132ec6e7"
+            ]
         ],
         "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-05-01T20:22:29.171158"
+        "timestamp": "2024-11-12T22:14:25.926392952"
     },
     "reconst - fodf_with_shells": {
         "content": [
-            {
-                "0": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__fodf.nii.gz:md5,c45f0391a462d358930809502dd2da15"
-                    ]
-                ],
-                "1": [
-                    
-                ],
-                "10": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_total.nii.gz:md5,9bac465d58b8662c3dce2c4937300a5a"
-                    ]
-                ],
-                "11": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_sum.nii.gz:md5,a849e3eb8c67cc176e88daca01669eef"
-                    ]
-                ],
-                "12": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__nufo.nii.gz:md5,711f0ee8d01e71166099ffdf4c684b5f"
-                    ]
-                ],
-                "13": [
-                    
-                ],
-                "14": [
-                    "versions.yml:md5,8f5a73278d63aac3bf8073c5d0ef488b"
-                ],
-                "2": [
-                    
-                ],
-                "3": [
-                    
-                ],
-                "4": [
-                    
-                ],
-                "5": [
-                    
-                ],
-                "6": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peaks.nii.gz:md5,fbc8af94bce991a6ebe3bfb837d39a52"
-                    ]
-                ],
-                "7": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peak_values.nii.gz:md5,4fd4a44c18544413c0e9bb672e60f709"
-                    ]
-                ],
-                "8": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peak_indices.nii.gz:md5,d39ad843a7b86ac7042c44b87356e68b"
-                    ]
-                ],
-                "9": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_max.nii.gz:md5,96b7a2dbab6306ca053b45bfad21be55"
-                    ]
-                ],
-                "afd_max": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_max.nii.gz:md5,96b7a2dbab6306ca053b45bfad21be55"
-                    ]
-                ],
-                "afd_sum": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_sum.nii.gz:md5,a849e3eb8c67cc176e88daca01669eef"
-                    ]
-                ],
-                "afd_total": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_total.nii.gz:md5,9bac465d58b8662c3dce2c4937300a5a"
-                    ]
-                ],
-                "csf_fodf": [
-                    
-                ],
-                "fodf": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__fodf.nii.gz:md5,c45f0391a462d358930809502dd2da15"
-                    ]
-                ],
-                "gm_fodf": [
-                    
-                ],
-                "nufo": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__nufo.nii.gz:md5,711f0ee8d01e71166099ffdf4c684b5f"
-                    ]
-                ],
-                "peak_indices": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peak_indices.nii.gz:md5,d39ad843a7b86ac7042c44b87356e68b"
-                    ]
-                ],
-                "peak_values": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peak_values.nii.gz:md5,4fd4a44c18544413c0e9bb672e60f709"
-                    ]
-                ],
-                "peaks": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peaks.nii.gz:md5,fbc8af94bce991a6ebe3bfb837d39a52"
-                    ]
-                ],
-                "vent_mask": [
-                    
-                ],
-                "versions": [
-                    "versions.yml:md5,8f5a73278d63aac3bf8073c5d0ef488b"
-                ],
-                "vf": [
-                    
-                ],
-                "vf_rgb": [
-                    
-                ],
-                "wm_fodf": [
-                    
+            "test__fodf.nii.gz:md5:header,b6ba80bf9e8830bc10f9b8b091b9b34b,data,f25eaf88162605407297dfad70c913f2",
+            "test__peaks.nii.gz",
+            "test__peak_values.nii.gz:md5:header,f55799c7ffe93b1148a313f0aade0f5f,data,59ed163b180b612419ec754b08da98eb",
+            "test__peak_indices.nii.gz",
+            [
+                [
+                    {
+                        "id": "test"
+                    },
+                    "test__afd_max.nii.gz:md5,61fb2106315ec2a20c4590b98d7e1a2c"
                 ]
-            }
-        ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
-        "timestamp": "2024-05-01T20:38:04.916377"
-    },
-    "reconst - fodf_no_mask": {
-        "content": [
-            {
-                "0": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__fodf.nii.gz:md5,1c0aa14841e90acbdc048c6f0b117ce2"
-                    ]
-                ],
-                "1": [
-                    
-                ],
-                "10": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_total.nii.gz:md5,713fae8f03e15434034c21dc647f4a20"
-                    ]
-                ],
-                "11": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_sum.nii.gz:md5,e907c21b54410ad69531b58b2c6a5e5d"
-                    ]
-                ],
-                "12": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__nufo.nii.gz:md5,0e58d2571878aa13882f858cb4e572ad"
-                    ]
-                ],
-                "13": [
-                    
-                ],
-                "14": [
-                    "versions.yml:md5,8f5a73278d63aac3bf8073c5d0ef488b"
-                ],
-                "2": [
-                    
-                ],
-                "3": [
-                    
-                ],
-                "4": [
-                    
-                ],
-                "5": [
-                    
-                ],
-                "6": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peaks.nii.gz:md5,3919c8117b3b800f52fc7319f523eb13"
-                    ]
-                ],
-                "7": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peak_values.nii.gz:md5,e92f556fe1a926d088590dd2a7d970d6"
-                    ]
-                ],
-                "8": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peak_indices.nii.gz:md5,ab4c1129a3ede2db638115e71258a288"
-                    ]
-                ],
-                "9": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_max.nii.gz:md5,db6d8bd847e08e2857173f572b46670a"
-                    ]
-                ],
-                "afd_max": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_max.nii.gz:md5,db6d8bd847e08e2857173f572b46670a"
-                    ]
-                ],
-                "afd_sum": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_sum.nii.gz:md5,e907c21b54410ad69531b58b2c6a5e5d"
-                    ]
-                ],
-                "afd_total": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__afd_total.nii.gz:md5,713fae8f03e15434034c21dc647f4a20"
-                    ]
-                ],
-                "csf_fodf": [
-                    
-                ],
-                "fodf": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__fodf.nii.gz:md5,1c0aa14841e90acbdc048c6f0b117ce2"
-                    ]
-                ],
-                "gm_fodf": [
-                    
-                ],
-                "nufo": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__nufo.nii.gz:md5,0e58d2571878aa13882f858cb4e572ad"
-                    ]
-                ],
-                "peak_indices": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peak_indices.nii.gz:md5,ab4c1129a3ede2db638115e71258a288"
-                    ]
-                ],
-                "peak_values": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peak_values.nii.gz:md5,e92f556fe1a926d088590dd2a7d970d6"
-                    ]
-                ],
-                "peaks": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test__peaks.nii.gz:md5,3919c8117b3b800f52fc7319f523eb13"
-                    ]
-                ],
-                "vent_mask": [
-                    
-                ],
-                "versions": [
-                    "versions.yml:md5,8f5a73278d63aac3bf8073c5d0ef488b"
-                ],
-                "vf": [
-                    
-                ],
-                "vf_rgb": [
-                    
-                ],
-                "wm_fodf": [
-                    
+            ],
+            [
+                [
+                    {
+                        "id": "test"
+                    },
+                    "test__afd_total.nii.gz:md5,31edb24c528419fcb8f6f423479e8cd9"
+                ]
+            ],
+            "test__afd_sum.nii.gz:md5:header,c9e720b9a8acfe45a617e6486ebb8de0,data,42a8407c3b6e9f743ed01e625c209c03",
+            [
+                [
+                    {
+                        "id": "test"
+                    },
+                    "test__nufo.nii.gz:md5,a8c3883e9dc99a661998d8cae6f08051"
                 ]
-            }
+            ],
+            [
+                "versions.yml:md5,f80e57f2c24a4a1fd403de1d132ec6e7"
+            ]
         ],
         "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-05-01T19:50:32.073387"
+        "timestamp": "2024-11-14T20:47:10.242722801"
     }
-}
\ No newline at end of file
+}
diff --git a/modules/nf-neuro/reconst/fodf/tests/nextflow.config b/modules/nf-neuro/reconst/fodf/tests/nextflow.config
index d297175..f9c0329 100644
--- a/modules/nf-neuro/reconst/fodf/tests/nextflow.config
+++ b/modules/nf-neuro/reconst/fodf/tests/nextflow.config
@@ -10,7 +10,6 @@ process {
         ext.md_threshold = 0.003
         ext.relative_threshold = 0.1
         ext.absolute_peaks = true
-        ext.processes = 4
         ext.peaks = true
         ext.peak_values = true
         ext.peak_indices = true
diff --git a/modules/nf-neuro/reconst/fodf/tests/nextflow_msmt.config b/modules/nf-neuro/reconst/fodf/tests/nextflow_msmt.config
index f070614..9fe6d30 100644
--- a/modules/nf-neuro/reconst/fodf/tests/nextflow_msmt.config
+++ b/modules/nf-neuro/reconst/fodf/tests/nextflow_msmt.config
@@ -10,7 +10,6 @@ process {
         ext.md_threshold = 0.003
         ext.relative_threshold = 0.1
         ext.absolute_peaks = true
-        ext.processes = 4
         ext.peaks = true
         ext.peak_values = true
         ext.peak_indices = true
@@ -24,5 +23,6 @@ process {
         ext.vf = true
         ext.vf_rgb = true
         ext.method = "msmt"
+        ext.ventricles_mask = true
     }
 }
diff --git a/modules/nf-neuro/reconst/fodf/tests/nextflow_no_metrics.config b/modules/nf-neuro/reconst/fodf/tests/nextflow_no_metrics.config
index 400ad15..cd4c275 100644
--- a/modules/nf-neuro/reconst/fodf/tests/nextflow_no_metrics.config
+++ b/modules/nf-neuro/reconst/fodf/tests/nextflow_no_metrics.config
@@ -10,7 +10,6 @@ process {
         ext.md_threshold = 0.003
         ext.relative_threshold = 0.1
         ext.absolute_peaks = true
-        ext.processes = 4
         ext.peaks = false
         ext.peak_values = false
         ext.peak_indices = false
diff --git a/modules/nf-neuro/reconst/fodf/tests/nextflow_shells.config b/modules/nf-neuro/reconst/fodf/tests/nextflow_shells.config
index 791ab8c..79958ef 100644
--- a/modules/nf-neuro/reconst/fodf/tests/nextflow_shells.config
+++ b/modules/nf-neuro/reconst/fodf/tests/nextflow_shells.config
@@ -10,7 +10,6 @@ process {
         ext.md_threshold = 0.003
         ext.relative_threshold = 0.1
         ext.absolute_peaks = true
-        ext.processes = 4
         ext.peaks = true
         ext.peak_values = true
         ext.peak_indices = true
@@ -18,6 +17,6 @@ process {
         ext.afd_total = true
         ext.afd_sum = true
         ext.nufo = true
-        ext.fodf_shells = "1000 2000 3000"
+        ext.fodf_shells = "1000 2000"
     }
 }
diff --git a/modules/nf-neuro/reconst/meanfrf/main.nf b/modules/nf-neuro/reconst/meanfrf/main.nf
index 75c0a07..5006be5 100644
--- a/modules/nf-neuro/reconst/meanfrf/main.nf
+++ b/modules/nf-neuro/reconst/meanfrf/main.nf
@@ -8,7 +8,7 @@ process RECONST_MEANFRF {
         'scilus/scilus:2.0.2' }"
 
     input:
-        tuple path(frf_list)
+        path(frf_list)
 
     output:
         path("mean_frf.txt")                            , emit: meanfrf
@@ -27,7 +27,7 @@ process RECONST_MEANFRF {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        scilpy: 2.0.2
+        scilpy: \$(pip list | grep scilpy | tr -s ' ' | cut -d' ' -f2)
     END_VERSIONS
     """
 
@@ -39,7 +39,7 @@ process RECONST_MEANFRF {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        scilpy: 2.0.2
+        scilpy: \$(pip list | grep scilpy | tr -s ' ' | cut -d' ' -f2)
     END_VERSIONS
     """
 }
diff --git a/modules/nf-neuro/reconst/meanfrf/meta.yml b/modules/nf-neuro/reconst/meanfrf/meta.yml
index 19f5dd7..ac628bd 100644
--- a/modules/nf-neuro/reconst/meanfrf/meta.yml
+++ b/modules/nf-neuro/reconst/meanfrf/meta.yml
@@ -10,7 +10,7 @@ keywords:
   - Average
 
 tools:
-  - "Scilpy":
+  - "scilpy":
       description: "The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox."
       homepage: "https://github.com/scilus/scilpy.git"
 
diff --git a/modules/nf-neuro/reconst/meanfrf/tests/main.nf.test b/modules/nf-neuro/reconst/meanfrf/tests/main.nf.test
index 8f1685c..e9f4856 100644
--- a/modules/nf-neuro/reconst/meanfrf/tests/main.nf.test
+++ b/modules/nf-neuro/reconst/meanfrf/tests/main.nf.test
@@ -31,11 +31,11 @@ nextflow_process {
             process {
                 """
                 input[0] = LOAD_DATA.out.test_data_directory
-                    .map{ test_data_directory -> [[
+                    .map{ test_data_directory -> [
                         file("\${test_data_directory}/frf.txt"),
                         file("\${test_data_directory}/mfrf.txt"),
                         file("\${test_data_directory}/nfrf.txt")
-                    ]]}
+                    ]}
                 """
             }
         }