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Can not locate class RemoveStrayHairs #9

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MeHelmy opened this issue Apr 12, 2019 · 0 comments
Open

Can not locate class RemoveStrayHairs #9

MeHelmy opened this issue Apr 12, 2019 · 0 comments

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@MeHelmy
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MeHelmy commented Apr 12, 2019

I had an error saying: it could not locate the class RemoveStrayHairs which is in src when I compile it javac RemoveStrayHairs.java it worked.

Then I had another issue in :
$EXTRACTHAIRS --mbq 0 --bam $LONGREADSBAM --VCF $PHASEDSNPS.prehairs --out $OUTPREFIX.hairs

It crashes because lack of memory my node is 50G can I control threads? Or how I can make it work?

Finally:
if [ ! -r $AS.raw.tgz ] then echo "tarring up alleleseq" tar cvzf $AS.raw.tgz $AS fi
always did not work. I used -cvzf and -C $AS yet did not work. can I comment it?

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