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Missing PASS in SNP file #5

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fritzsedlazeck opened this issue Dec 12, 2018 · 0 comments
Open

Missing PASS in SNP file #5

fritzsedlazeck opened this issue Dec 12, 2018 · 0 comments
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enhancement

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@fritzsedlazeck
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I would suggest to maybe put in a warning or error if there are no SNPs after filtering. We just spent some time to debug an issue and it came down to that the SNP caller did not specify PASS variants.

Thanks
Fritz
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