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- Looking for Automated Image Analysis?
-- webKnossos is excellent for viewing, managing and annotating large-scale image datasets but - sometimes you need more power to scale. -
-- scalable minds offers a wide range of machine learning based image analysis services for - reconstructing rich information from microscopy images. We can help with image alignment / - registration, dense segmentation, and object detection. -
- Learn more - -- The leading in-browser annotation tool for 3D microscopy data for researchers -
-- webKnossos supports your research with efficient data management and advanced tools to - create skeleton and volume annotations. It is optimized to manage petabytes of 3D - microscopy image data, as required by Neuroscientists. -
-- webKnossos is developed as an open-source project in collaboration with international - research partners. -
- - - Ask a Question - - -
-
- - Use Flight mode to quickly capture high-quality skeleton annotations. Organize - the UI to fit your needs and discover your data in the easy-to-use viewer. -
-- Create fine-grained skeleton annotations: Mark branch points and overlay 3D mesh - structures on your data. Easily organize your skeletons into groups and highlight special - interest regions with comments. -
-- As a web-based application, webKnossos makes it extremely easy to share links to your - datasets and annotations. Send protected deep links to regions within your dataset for - your colleagues to review. -
-- Support your paper publications by publishing your datasets and annotations with - webKnossos for everyone to discover. No registration required and immediate access to - viewing the original data. -
-- Use webKnossos to create and proof-read dense 3D volume annotations. Advanced tools make - it easy to label volume data in order to train a machine learning model. Quickly refine - existing annotations and correct mistakes created from automated segmentation systems. -
-Explore your volume data in 3D through on-the-fly 3D isosurface visualizations.
-- webKnossos supports a wide range of common 3D data formats. (Knossos cubes, WKW, - Neuroglancer Precomputed, BossDB, Tiff Stacks) Datasets can be hosted on-premise or in our - cloud for simplicity. -
-- Work with multi-channel datasets. From simple grayscale and RGB data to (multi-channel) - segmentation layers. webKnossos is optimized for working with 3D electron, light, and - fluorescence microscopy datasets. -
-- Datasets support access-level control and can be securely shared with colleagues and made - available for reviewers. -
-- Reconstructing large-scale Connectomics datasets can be daunting. Manage skeleton and - volume annotations with advanced project and task management features. Leverage - auto-assignments within your team or crowd-sourcing. View and download the aggregated - individual results as a whole project. -
-- Fine-grained user access levels and subteams help you manage datasets and tasks within - your lab. -
-Feature Summary
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-Hosting Solutions
-
- Our webKnossos hosting solutions get you started with webKnossos today.
- Fast, functional, and flexible. Trusted by leading research labs.
-
- Looking for Automated Image Analysis?
-- Check out Voxelytics and image analysis services from scalable minds. Reconstruct rich - information from microscopy images with machine learning-based tools. Automate tasks - such as image alignment, registration, dense segmentation, and object detection. -
- -Frequently Asked Questions
-- You can try webKnossos for free with any of public dataset here on webknossos.org.{" "} - trackAction("[Pricing] CreateFreeAccount")}> - Create a free account today. - -
-- All webKnossos features can be used with free accounts. Try it with the{" "} - available published datasets. We are also happy to - integrate your dataset in the publication gallery. Alternatively, upgrade to the Premium - plan and start working with your unreleased, private data. -
-- You can learn more about webKnosssos in the{" "} - user documentation. Alternatively,{" "} - trackAction("EmailContact")}> - get in touch with us - {" "} - and one of our webKnossos experts will help you get started. -
-- Data security is one of our top priorities. All private datasets uploaded on - webknossos.org are stored securely in the scalable minds cloud infrastructure and NOT - shared with anyone. webKnossos has fine-grained permissions for individual users, teams, - and datasets to control the access. Only authorized users within your organization will - be able to access your datasets and annotations. Read our{" "} - privacy statement. -
-- We offer a Custom hosting plan, where datasets can be directly stored in your data - center.{" "} - trackAction("EmailContact")}> - Get in touch with us - {" "} - to learn more. -
-- Yes, you can. webKnossos allows the download and export of skeleton annotations as NML - files and segmentations/volume data as binary/wkw files.{" "} -
-- See the{" "} - documentation on Tooling for - a recommendation of Python/MATLAB libaries to work with the webKnossos standard formats. -
-- We offer a Custom hosting plan, where datasets can be directly stored in your data - center.{" "} - trackAction("EmailContact")}> - Get in touch with us - {" "} - to learn more. -
-- All datasets uploaded on webknossos.org are stored securely in the scalable minds cloud - infrastructure in Germany. -
-- We offer a Custom hosting plan, where datasets can be directly stored in your data - center.{" "} - trackAction("EmailContact")}> - Get in touch with us - {" "} - to learn more. -
-- Our Premium plan includes 100GB of storage for datasets and annotations to get you - started. Each additional terabyte of storage costs an additional 50€ per month*. -
-- For details and pricing{" "} - trackAction("EmailContact")}> - get in touch with us - - . -
-- We accept payment through credit card, PayPal and bank transfer. Billing is on an annual - basis. -
-- Plans are billed annually. You can cancel your plan at the end of your billing cycle. - You can try webKnossos for free here on webKnossos.org. -
-- You can always upgrade your plan later. We are happy to assist you with migrating your - data if necessary. -
-- We are happy to help you find a custom solution for setting up webKnossos. Over the - years we have worked with different research institutes and have tackled a diverse set - of challenges. Custom data formats, petabyte-scale datasets, on-premise or cloud - storage, file system tuning, monitoring... -
-- Our Custom hosting plan is right for you.{" "} - trackAction("EmailContact")}> - Talk to our webKnossos experts about custom solutions. - -
-- webKnossos offers a wide array of tools to manage large 3D datasets and annotate them - efficiently. Learn more about webKnossos and its functionality on our{" "} - features overview page. -
-- Check out the webKnosssos user documentation{" "} - to learn more about all annotation modes and their settings. Alternatively,{" "} - trackAction("EmailContact")}> - get in touch with us - {" "} - and one of our webKnossos experts will help you get started. -
-- Make sure to follow{" "} - - webKnossos on Twitter - {" "} - to get updates about the latest features. -
-- Our Premium plan makes it simple for you to get started. We provide you with a fully - managed and preconfigured version of webKnossos that can grow with your needs. No - installation required. All data is hosted on the scalable minds cloud infrastructure. -
-- Some clients prefer to store their datasets on-premise, within their infrastructure or - have exceptional data needs. With our Custom plan, webKnossos can be configured to load - data from a dedicated data store on your servers. -
-- We constantly develop new features and continuously improve webKnossos. As an - open-source project, you can extend webKnossos yourself. webKnossos also comes with a - rich{" "} - frontend API{" "} - and REST interface for - scripting new workflows. Alternatively, you can hire us to help you with custom feature - development. -
-- We are always interested in learning about new ideas and gathering feedback.{" "} - trackAction("EmailContact")}> - Get in touch with us and let us know. - -
-- webKnossos is an open-source project developed by{" "} - scalable minds in collaboration with the{" "} - - Max-Planck-Institute for Brain Research - - . webKnossos is methodically proven and published in{" "} - Nature Methods (2017) 14, 691-694. -
-- Check out{" "} - the instructions on Github to - deploy your own instance of webKnossos. If that is too much trouble, you can find all - features here on webknossos.org as well. -
-- All hosting plans on this website are executed and handled exclusively by scalable - minds. -
-- While webKnossos and Knossos share some of the roots, they are two distinct software - tools for viewing and annotating 3D datasets developed by different teams. -
-- webKnossos supports a wide array of popular data formats (Knossos cubes, WKW, - Neuroglancer Precomputed, BossDB, Tiff Stacks) and is used for creating both skeleton - and volume annotations. As browser-based application, it is easy to share links to - datasets and publish datasets for other to review. -
-- webKnossos is an open-source project developed by{" "} - scalable minds in collaboration with the{" "} - - Max-Planck-Institute for Brain Research. - -
-- All hosting plans on this website are executed and handled exclusively by scalable - minds. -
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