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.gitignore
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/settings.ini
/*.log
/test/data_amplicon/*.fastq.gz
/test/data_amplicon/*.bam
/test/data_amplicon/*.bam.bai
/test/data_amplicon/*.log
/test/data_amplicon/*.qcML
/test/data_amplicon/*.vcf.gz
/test/data_amplicon/*.vcf.gz.tbi
/test/data_amplicon/*.GSvar
/test/data_amplicon/*_QCML.txt
/test/data_amplicon/*_cnvs.tsv
/test/data_amplicon/*_lowcov.bed
/test/data_chrx/*.fastq.gz
/test/data_chrx/*.bam
/test/data_chrx/*.bam.bai
/test/data_chrx/*.log
/test/data_chrx/*.qcML
/test/data_chrx/*.vcf.gz
/test/data_chrx/*.vcf.gz.tbi
/test/data_chrx/*.GSvar
/test/data_chrx/*_QCML.txt
/test/data_chrx/*_cnvs.tsv
/test/data_chrx/*_cnvs.seg
/test/data_chrx/*_lowcov.bed
/test/data_trio/*.GSvar
/test/data_trio/*.log
/test/data_trio/*.qcML
/test/data_trio/*.bam
/test/data_trio/*.bam.bai
/test/data_trio/*.vcf.gz
/test/data_trio/*.vcf.gz.tbi
/test/data_trio/*_trio.tsv
/test/data_multi/*.GSvar
/test/data_multi/*.log
/test/data_multi/*.qcML
/test/data_multi/*.bam
/test/data_multi/*.bam.bai
/test/data_multi/*.vcf.gz
/test/data_multi/*.vcf.gz.tbi
/test/data_capa/*.GSvar
/test/data_capa/*.log
/test/data_capa/*_report.rtf
/test/data_capa/*_igv.xml
/test/data_capa/*_qcML.txt
/test/data_capa/Sample_GS150496_01/
/test/data_capa/Sample_GS150497_01/
/test/data_capa/Somatic_GS150497_01-GS150496_01/
test/data_capa/*_lowcov.bed
/test/data_capa/Somatic_Tumor1-Normal1/*_igv.xml
/test/data_capa/Somatic_Tumor1-Normal1/*_report.rtf
/test/data_capa/Somatic_Tumor1-Normal1/*.log
/test/data_capa/Somatic_Tumor2-Normal2/*_igv.xml
/test/data_capa/Somatic_Tumor2-Normal2/*_report.rtf
/test/data_capa/Somatic_Tumor2-Normal2/*.log
/test/data_capa/*_QCML.txt
/test/data_rna/analyze_rna_out_se.log
/test/data_rna/analyze_rna_out_pe.log
/test/data_rna/paired_end/
/test/data_rna/single_end/
/test/data_somatic_rna/project_folder/
/test/data_somatic_rna/somatic_rna_out.log
/test/data_somatic/Sample_GS110168/
/test/data_somatic/Sample_GS110169/
/test/data_somatic/Sample_GS150344_01/
/test/data_somatic/Sample_SampleUID1_01/
/test/data_somatic/Sample_SampleUID2_01/
/test/data_somatic/results_pair1/
/test/data_somatic/results_pair2/
/test/data_somatic/results_single/
/test/data_somatic/results_uid1/
/test/data_somatic/results_uid2/
/test/data_somatic/results_amp/
/test/data_somatic/*_qcML.txt
/test/data_somatic/*_var_qci.vcf.gz
/test/data_out/tool_test_*
/test/data_emed/Sample_GS160540_01/
/test/data_emed/Sample_GS160539_01/
/test/data_emed/Sample_I16R003a06_01/
/test/data_emed/Sample_I16R003a05_01/
/test/data_emed/results_emed1/
/test/data_emed/results_emed2/
/test/data_emed/*.GSvar
/test/data_emed/*.vcf.gz
/test/data_emed/*.tsv
/test/data_ivac/Sample_GS140850_02/
/test/data_ivac/Sample_GS140851_02/
/test/data_ivac/Sample_I14R010d01_01/
/test/data_ivac/Sample_I14R010d02_01/
/test/data_ivac/results_ivac1/
/test/data_ivac/results_ivac2/
/test/data_ivac/*.GSvar
/test/data_ivac/*.vcf.gz
/test/data_ivac/*.tsv