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Hello,
I assume this might be due to an updated seurat version, but our code just started spitting out this warning:
2021-05-10T06:32:14.3076028Z 11. Seurat:::PseudobulkExpression(...) 2021-05-10T06:32:14.3076758Z 13. SeuratObject:::CreateSeuratObject.default(...) 2021-05-10T06:32:14.3077559Z 14. SeuratObject::CreateAssayObject(...) 2021-05-10T06:32:14.3078195Z 16. SeuratObject:::as.sparse.matrix(x = counts, ...) 2021-05-10T06:32:14.3078760Z 17. SeuratObject:::CheckDots(...)
From what I can see, this is b/c as.sparse.Matrix is called here, with "...":
https://github.com/mojaveazure/seurat-object/blob/6d847461cb4993335e3467be85f59302ce01c4ce/R/assay.R#L130
and yet here it's called with the argument row.names:
https://github.com/mojaveazure/seurat-object/blob/6d847461cb4993335e3467be85f59302ce01c4ce/R/seurat.R#L958
should it?
The text was updated successfully, but these errors were encountered:
Also, I am using SeuratObject and Seurat 4.0.1
Sorry, something went wrong.
This should be fixed by #32
Successfully merging a pull request may close this issue.
Hello,
I assume this might be due to an updated seurat version, but our code just started spitting out this warning:
2021-05-10T06:32:14.3076028Z 11. Seurat:::PseudobulkExpression(...)
2021-05-10T06:32:14.3076758Z 13. SeuratObject:::CreateSeuratObject.default(...)
2021-05-10T06:32:14.3077559Z 14. SeuratObject::CreateAssayObject(...)
2021-05-10T06:32:14.3078195Z 16. SeuratObject:::as.sparse.matrix(x = counts, ...)
2021-05-10T06:32:14.3078760Z 17. SeuratObject:::CheckDots(...)
From what I can see, this is b/c as.sparse.Matrix is called here, with "...":
https://github.com/mojaveazure/seurat-object/blob/6d847461cb4993335e3467be85f59302ce01c4ce/R/assay.R#L130
and yet here it's called with the argument row.names:
https://github.com/mojaveazure/seurat-object/blob/6d847461cb4993335e3467be85f59302ce01c4ce/R/seurat.R#L958
should it?
The text was updated successfully, but these errors were encountered: