NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(FindVariableFeatures,polyAsiteAssay)
S3method(RunPCA,polyAsiteAssay)
S3method(merge,polyAsiteAssay)
S3method(subset,polyAsiteAssay)
export(CalcPolyAResiduals)
export(CreatePolyAAssay)
export(FeaturesToGRanges)
export(FindDifferentialPolyA)
export(GRangesToString)
export(GetPolyADbAnnotation)
export(PolyACoveragePlot)
export(ReadPolyApipe)
exportClasses(polyAsiteAssay)
import(Seurat)
import(Signac)
importFrom(GenomeInfoDb,"seqlevelsStyle<-")
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,isDisjoint)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,start)
importFrom(GenomicRanges,strand)
importFrom(IRanges,distanceToNearest)
importFrom(IRanges,trim)
importFrom(MGLM,MGLMfit)
importFrom(Matrix,colSums)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(Seurat,CreateAssayObject)
importFrom(data.table,fread)
importFrom(dplyr,left_join)
importFrom(gplm,kreg)
importFrom(irlba,irlba)
importFrom(methods,as)
importFrom(methods,new)
importFrom(methods,slot)
importFrom(plyranges,anchor_3p)
importFrom(plyranges,mutate)
importFrom(rtracklayer,readGFF)
importFrom(stats,aggregate)
importFrom(stats,lm)
importFrom(stats,prcomp)
importFrom(stats,quantile)
importFrom(stats,relevel)
importFrom(tidyr,separate)
importFrom(utils,capture.output)
importFrom(utils,head)
importFrom(utils,read.table)
importFrom(utils,tail)