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KP.3.1.1 with S:T572I on C11152T branch(55, 5 countries) #2244

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Over-There-Is opened this issue Nov 23, 2024 · 2 comments
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KP.3.1.1 with S:T572I on C11152T branch(55, 5 countries) #2244

Over-There-Is opened this issue Nov 23, 2024 · 2 comments
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Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. KP.3.1.1 S:572 Small clusters ?? This label identifies lineages with very few sequences,allowing to track them for a couple of weeks
Milestone
MC.26.1

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@Over-There-Is
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KP.3.1.1> C11152T> C25803T> C23277T(S:T572I)
Query: C7113T, C11152T, C23277T, C25803T

Earliest sequence: 07-29 Washington, USA EPI_ISL_19349540
Latest sequence: 11-04 British Columbia, Canada EPI_ISL_19558271
Region detected: Canada 31, US 16(1 from Portugal, 2 not on GISAID), France 1, Germany 1

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/hgPhyloPlace/subtreeAuspice1_genome_test_2be37_170f60.json?c=country&label=id:node_7315750
image

Sequences:
EPI_ISL_19349540, EPI_ISL_19379628, EPI_ISL_19419451,
EPI_ISL_19419717, EPI_ISL_19428488, EPI_ISL_19428643,
EPI_ISL_19438078, EPI_ISL_19438213, EPI_ISL_19438444,
EPI_ISL_19438734, EPI_ISL_19441713, EPI_ISL_19445231,
EPI_ISL_19452350, EPI_ISL_19456768, EPI_ISL_19456770,
EPI_ISL_19461286, EPI_ISL_19461425, EPI_ISL_19468634,
EPI_ISL_19468692, EPI_ISL_19480247, EPI_ISL_19488790,
EPI_ISL_19488830, EPI_ISL_19495759, EPI_ISL_19495805,
EPI_ISL_19514082, EPI_ISL_19517099, EPI_ISL_19520117,
EPI_ISL_19520420, EPI_ISL_19527210, EPI_ISL_19533759,
EPI_ISL_19540408, EPI_ISL_19543662, EPI_ISL_19544012,
EPI_ISL_19544017, EPI_ISL_19546580, EPI_ISL_19549328,
EPI_ISL_19557379, EPI_ISL_19558065, EPI_ISL_19558068-19558069,
EPI_ISL_19558177, EPI_ISL_19558183, EPI_ISL_19558185-19558186,
EPI_ISL_19558233, EPI_ISL_19558260, EPI_ISL_19558271,
PQ387527.1, PQ585506.1
@FedeGueli FedeGueli added Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. Small clusters ?? This label identifies lineages with very few sequences,allowing to track them for a couple of weeks labels Dec 2, 2024
@Over-There-Is Over-There-Is changed the title KP.3.1.1 with S:T572I on C11152T branch(49, 5 countries) KP.3.1.1 with S:T572I on C11152T branch(52, 5 countries) Dec 6, 2024
@xz-keg
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xz-keg commented Dec 11, 2024

designated MC.26.1

@xz-keg xz-keg closed this as completed Dec 11, 2024
@xz-keg xz-keg added this to the MC.26.1 milestone Dec 11, 2024
@Over-There-Is
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Over-There-Is commented Dec 11, 2024 •
edited by FedeGueli
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MC.26.1 via cov-lineages/pango-designation@16205e7

Over-There-Is referenced this issue in cov-lineages/pango-designation Dec 11, 2024
@corneliusroemer
Designate a bunch of MC, XEC and more
16205e7 
Resolves #2825
Resolves #2830
Resolves #2823
@FedeGueli FedeGueli changed the title KP.3.1.1 with S:T572I on C11152T branch(52, 5 countries) KP.3.1.1 with S:T572I on C11152T branch(55, 5 countries) Dec 15, 2024
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Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. KP.3.1.1 S:572 Small clusters ?? This label identifies lineages with very few sequences,allowing to track them for a couple of weeks
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@xz-keg @Over-There-Is @FedeGueli