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MC.1+S:A1174V(114 seqs, 8 places) #2206

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xz-keg opened this issue Nov 8, 2024 · 10 comments
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MC.1+S:A1174V(114 seqs, 8 places) #2206

xz-keg opened this issue Nov 8, 2024 · 10 comments
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Convergent evolution Lineages with convergent mutations MC.1 S:1174 Small clusters ?? This label identifies lineages with very few sequences,allowing to track them for a couple of weeks
Milestone
MC.1.2

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@xz-keg
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xz-keg commented Nov 8, 2024 •
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MC.1+C14220T+C25083T(S:A1174V)

Mostly Canadian clusters, but spread to other countries so propose it.
GISAID query: C14220T, C25083T, C13297T,C23277T
No. of seqs: 40(Australia 1 USA 2 Canada 37(QC,SK,ON))

First: EPI_ISL_19408411, Canada-QC, 2024-9-2
Latest: EPI_ISL_19528636, Canada-QC, 2024-10-28

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@FedeGueli
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FedeGueli commented Nov 8, 2024 •
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Thx i was tracking this too with C25083T,C7764T, A13121T, that finds a lot less seqs,
interesting that at some point it got Orf1b:G662S

@FedeGueli FedeGueli added Small clusters ?? This label identifies lineages with very few sequences,allowing to track them for a couple of weeks S:1174 MC.1 Convergent evolution Lineages with convergent mutations labels Nov 8, 2024
@xz-keg xz-keg changed the title MC.1+S:A1174V(40 seqs, 5 places) MC.1+S:A1174V(54 seqs, 5 places) Nov 13, 2024
@FedeGueli FedeGueli changed the title MC.1+S:A1174V(54 seqs, 5 places) MC.1+S:A1174V(60 seqs, 5 places) Nov 18, 2024
@FedeGueli FedeGueli changed the title MC.1+S:A1174V(60 seqs, 5 places) MC.1+S:A1174V(58 seqs, 6 places) Nov 18, 2024
@FedeGueli
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58 South Australia

@Over-There-Is
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83

@xz-keg
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xz-keg commented Nov 22, 2024

also in USA-NY(previous OH)

@xz-keg xz-keg changed the title MC.1+S:A1174V(58 seqs, 6 places) MC.1+S:A1174V(83 seqs, 7 places) Nov 22, 2024
@FedeGueli
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27/83 with Orf1b:G662S but only in Canada

@xz-keg xz-keg changed the title MC.1+S:A1174V(83 seqs, 7 places) MC.1+S:A1174V(89 seqs, 7 places) Nov 29, 2024
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xz-keg commented Dec 5, 2024

95, England,

@xz-keg xz-keg changed the title MC.1+S:A1174V(89 seqs, 7 places) MC.1+S:A1174V(95 seqs, 8 places) Dec 5, 2024
@FedeGueli
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Only 3 non Canadian samples in November but from very different areas of the world

@FedeGueli FedeGueli changed the title MC.1+S:A1174V(95 seqs, 8 places) MC.1+S:A1174V(114 seqs, 8 places) Dec 9, 2024
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114 mostly Canadian clusters

@xz-keg
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xz-keg commented Dec 11, 2024

designated MC.1.2

@xz-keg xz-keg closed this as completed Dec 11, 2024
@xz-keg xz-keg added this to the MC.1.2 milestone Dec 11, 2024
Over-There-Is referenced this issue in cov-lineages/pango-designation Dec 11, 2024
@corneliusroemer
Designate a bunch of MC, XEC and more
16205e7 
Resolves #2825
Resolves #2830
Resolves #2823
@FedeGueli
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MC.1.2 via cov-lineages/pango-designation@16205e7

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Convergent evolution Lineages with convergent mutations MC.1 S:1174 Small clusters ?? This label identifies lineages with very few sequences,allowing to track them for a couple of weeks
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