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KP.3.1.1 + C11020T ( or MC.22) + S:A435S with S:C1235F and Orf9b:R32L (12, 5 places) #2201

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FedeGueli opened this issue Nov 5, 2024 · 4 comments
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KP.3.1.1 + C11020T ( or MC.22) + S:A435S with S:C1235F and Orf9b:R32L (12, 5 places) #2201

FedeGueli opened this issue Nov 5, 2024 · 4 comments
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Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. KP.3.1.1 S:435 S:1235
Milestone
MC.28.1

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@FedeGueli
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FedeGueli commented Nov 5, 2024 •
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MC.22 [KP.3.1.1 > C11020T] >> T16224C, S:A435S (G22865T), S:C1235F (C23929T),G25266T, ORF9b:R32L (G28378T)

Query: C11020T, G22865T, C23929T

Samples: 12
Places: 5 Ireland , France, Canada, Us , Wales
First collected in Illinois on 2024-08-26

Tree:
Screenshot 2024-11-05 alle 01 10 01
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_13245_95d120.json?c=userOrOld&label=id:node_7246097
@FedeGueli FedeGueli added Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. S:435 KP.3.1.1 S:1235 labels Nov 7, 2024
@FedeGueli FedeGueli changed the title NEW KP.3.1.1 + S:A435S with S:C1235F and Orf9b:R32L (12, 5 places) MC.22 + S:A435S with S:C1235F and Orf9b:R32L (12, 5 places) Nov 12, 2024
@FedeGueli
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Parent designated MC.22

FedeGueli referenced this issue in cov-lineages/pango-designation Nov 12, 2024
@corneliusroemer
Designate XDY.1 and MC.22
c822601
@FedeGueli
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no new sequences

@FedeGueli FedeGueli closed this as not planned Won't fix, can't repro, duplicate, stale Nov 26, 2024
@xz-keg
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xz-keg commented Dec 11, 2024

This one designated MC.28.1, it seems the C11020T is independent?

@xz-keg xz-keg added this to the MC.28.1 milestone Dec 11, 2024
@Over-There-Is
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Over-There-Is commented Dec 11, 2024 •
edited by FedeGueli
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Designated MC.28.1 via cov-lineages/pango-designation@16205e7

Over-There-Is referenced this issue in cov-lineages/pango-designation Dec 11, 2024
@corneliusroemer
Designate a bunch of MC, XEC and more
16205e7 
Resolves #2825
Resolves #2830
Resolves #2823
@FedeGueli FedeGueli changed the title MC.22 + S:A435S with S:C1235F and Orf9b:R32L (12, 5 places) KP.3.1.1 + C11020T ( or MC.22) + S:A435S with S:C1235F and Orf9b:R32L (12, 5 places) Dec 11, 2024
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Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. KP.3.1.1 S:435 S:1235
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@xz-keg @Over-There-Is @FedeGueli