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XEC subbranch with S:R346I on Orf1a:A599T branch (5 sequences, 3 countries) #2029

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Over-There-Is opened this issue Sep 13, 2024 · 4 comments
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XEC subbranch with S:R346I on Orf1a:A599T branch (5 sequences, 3 countries) #2029

Over-There-Is opened this issue Sep 13, 2024 · 4 comments
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FLuQE S:F456L+S:Q493E Rapid review needed S:22 S:59 S:346

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@Over-There-Is
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XEC> G2060A(Orf1a:A599T)> G22599T(S:R346I)
Query: G2060A, C18657T, G22599T

Regions detected: France 2, US 2(1 from Spain, 1 airport pooled)

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_1ea3c_4b7650.json?c=country&f_userOrOld=uploaded%20sample&label=id:node_11653324
image

EPI_ISL_19412261, EPI_ISL_19412289, EPI_ISL_19412973,
EPI_ISL_19413008
@xz-keg xz-keg mentioned this issue Sep 26, 2024
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@FedeGueli FedeGueli changed the title XEC subbranch with S:R346I on Orf1a:A599T branch (4 sequences, 3 countries) XEC subbranch with S:R346I on Orf1a:A599T branch (5 sequences, 2 Places) Sep 27, 2024
@FedeGueli
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one more, super recent from Spain.

@Over-There-Is Over-There-Is changed the title XEC subbranch with S:R346I on Orf1a:A599T branch (5 sequences, 2 Places) XEC subbranch with S:R346I on Orf1a:A599T branch (5 sequences, 3 countries) Sep 29, 2024
@DailyCovidCases
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DailyCovidCases commented Oct 11, 2024 •
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Still 5 seqs now, this branch has slowed down a lot, closing this

@xz-keg
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xz-keg commented Oct 16, 2024

This one seems dead, mysterious.

@xz-keg xz-keg closed this as completed Oct 16, 2024
@FedeGueli
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This one seems dead, mysterious.

S:R346I is quite deleterious to me maybe even more with the XEC NTD

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FLuQE S:F456L+S:Q493E Rapid review needed S:22 S:59 S:346
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@xz-keg @Over-There-Is @FedeGueli @DailyCovidCases