-
Notifications
You must be signed in to change notification settings - Fork 3
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
KP.3.1 subbranch with S:N>K679R(99 seqs, 15 countries, mainly in Spain) and further S:L176F(27, 5 countries) #1802
Labels
Milestone
Comments
I think this was spotted by @aviczhl2 tto : cov-lineages/pango-designation#2646 (comment) and i ve added a slighty different query:
|
81, Sweden, Luxembourg, Italy |
89, Finland |
100 Denmark |
pls propose it |
Transferred to cov-lineages/pango-designation#2743 |
FedeGueli
referenced
this issue
in cov-lineages/pango-designation
Dec 19, 2024
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Found with @aviczhl2 's phylogenic tree analysis tool.
Spotted first by @aviczhl2 .
KP.3.1> A1620G(Orf1a:E452G)> T2593C> C8616T(Orf1a:A2784V)> C14216T(Orf1b:T250I), A23598G(S:K679R)> C22088T(S:L176F)
Query: C14216T, A23598G
Earliest sequence: 04-21 Madrid, Spain EPI_ISL_19164708
Latest sequence: 07-30 Skåne, Sweden EPI_ISL_19326372
Regions detected:
Spain 52(including 1 from Canary Islands), France 6, UK 6, Sweden 4, Ireland 4, Italy 2, Portugal 2, Finland 1, Greece 1, Netherlands 1, Luxembourg 1;
US 7(1 from Greece, 1 from Spain), Canada 1;
Israel 1.
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_66f36_b651f0.json?c=country&label=id:node_7028498

Sequences:
EPI_ISL_19164708, EPI_ISL_19164712, EPI_ISL_19176965,
EPI_ISL_19178589, EPI_ISL_19179515, EPI_ISL_19185426,
EPI_ISL_19186676, EPI_ISL_19189621, EPI_ISL_19194760,
EPI_ISL_19194769, EPI_ISL_19195261, EPI_ISL_19197928,
EPI_ISL_19201438, EPI_ISL_19201738, EPI_ISL_19214624,
EPI_ISL_19215264, EPI_ISL_19215276, EPI_ISL_19216662,
EPI_ISL_19218924, EPI_ISL_19219465, EPI_ISL_19220641,
EPI_ISL_19221168, EPI_ISL_19221172, EPI_ISL_19221310,
EPI_ISL_19221771, EPI_ISL_19222000, EPI_ISL_19225530,
EPI_ISL_19225568, EPI_ISL_19225573, EPI_ISL_19229220,
EPI_ISL_19229223, EPI_ISL_19231626, EPI_ISL_19232532-19232533,
EPI_ISL_19232597, EPI_ISL_19235907, EPI_ISL_19252937,
EPI_ISL_19258573, EPI_ISL_19261329, EPI_ISL_19261586,
EPI_ISL_19263174, EPI_ISL_19263232, EPI_ISL_19263264,
EPI_ISL_19263302, EPI_ISL_19263321, EPI_ISL_19264890,
EPI_ISL_19265498, EPI_ISL_19265509, EPI_ISL_19266060,
EPI_ISL_19267058, EPI_ISL_19267060, EPI_ISL_19270338,
EPI_ISL_19271730, EPI_ISL_19273215, EPI_ISL_19276263,
EPI_ISL_19276287, EPI_ISL_19277304, EPI_ISL_19280649,
EPI_ISL_19280673, EPI_ISL_19280872, EPI_ISL_19281671,
EPI_ISL_19287047, EPI_ISL_19289400, EPI_ISL_19290827,
EPI_ISL_19291541, EPI_ISL_19292706, EPI_ISL_19293241,
EPI_ISL_19296711, EPI_ISL_19296910, EPI_ISL_19300146,
EPI_ISL_19305441, EPI_ISL_19305699, EPI_ISL_19307088,
EPI_ISL_19309647, EPI_ISL_19310720, EPI_ISL_19311299,
EPI_ISL_19312405, EPI_ISL_19312486, EPI_ISL_19312559,
EPI_ISL_19313452, EPI_ISL_19319581, EPI_ISL_19322327,
EPI_ISL_19322362, EPI_ISL_19322545, EPI_ISL_19323296,
EPI_ISL_19323471, EPI_ISL_19326372, EPI_ISL_19327347,
EPI_ISL_19331142
The text was updated successfully, but these errors were encountered: