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Deprecated url for Gemma dataset retrieval #3

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tesar-stepan opened this issue Sep 6, 2017 · 2 comments
Open

Deprecated url for Gemma dataset retrieval #3

tesar-stepan opened this issue Sep 6, 2017 · 2 comments

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@tesar-stepan
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It has been put to my attention that EGAD is failing to download data from Gemma.
We recently changed the rest API for Gemma, including the URLs.
As a temporary solution, we have created a routing rule to redirect the requests in question to the new endpoint, but if at all possible, the line 25 in file EGAD/EGAD/R/get_expression_data_gemma.R should be changed to access the new endpoint:
http://chibi.ubc.ca/Gemma/rest/datasets/GSE34308/data?filter=true

@sarbal
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sarbal commented Sep 8, 2017

Thanks for the note. I've been trying to update it and hopefully will have this sorted soon.

@ppavlidis
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The url should be based on gemma.msl.ubc.ca - though chibi urls will continue to work for now.

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