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Can't get version of kraken, kraken-report or mafft ? #312

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tseemann opened this issue Feb 28, 2017 · 3 comments
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Can't get version of kraken, kraken-report or mafft ? #312

tseemann opened this issue Feb 28, 2017 · 3 comments
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@tseemann
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tseemann commented Feb 28, 2017 •
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Roary 3.7.0 and 3.8.0 installed via CPAN.

2017/02/28 14:48:36 Looking for 'kraken' - found /home/linuxbrew/.linuxbrew/bin/kraken
Use of uninitialized value in concatenation (.) or string at /bio/perl5/lib/perl5/Bio/Roary/External/CheckTools.pm line 129.
2017/02/28 14:48:36 Determined kraken version is
2017/02/28 14:48:36 Looking for 'kraken-report' - found /home/linuxbrew/.linuxbrew/bin/kraken-report
Use of uninitialized value in concatenation (.) or string at /bio/perl5/lib/perl5/Bio/Roary/External/CheckTools.pm line 129.
2017/02/28 14:48:36 Determined kraken-report version is
2017/02/28 14:48:36 Looking for 'mafft' - found /home/linuxbrew/.linuxbrew/bin/mafft
Use of uninitialized value in concatenation (.) or string at /bio/perl5/lib/perl5/Bio/Roary/External/CheckTools.pm line 129.       2017/02/28 14:48:36 Determined mafft version is
@andrewjpage andrewjpage added the bug label Mar 9, 2017
@andrewjpage
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Fixed getting the version for MAFFT

@tseemann
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tseemann commented Sep 8, 2017 

$ kraken --version
Kraken version 0.10.5-beta
Copyright 2013-2015, Derrick Wood ([email protected])

$ kraken-report --version
Kraken version 0.10.5-beta
Copyright 2013-2015, Derrick Wood ([email protected])

@andrewjpage
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Fixed in version 3.10.2

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@andrewjpage @tseemann