DESCRIPTION

Package: scCustomize
Type: Package
Title: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing
Description: Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'.  'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions.  For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.
Version: 3.0.1
Date: 2024-12-18
Authors@R: c(
    person(given = "Samuel", family = "Marsh", email = "samuel.marsh@childrens.harvard.edu", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3012-6945")),
    person(given = "Ming", family = "Tang", role = c("ctb"), email = "tangming2005@gmail.com"),
    person(given = 'Velina', family = 'Kozareva', role = c('ctb')),
    person("Lucas", "Graybuck", email = "lucasg@alleninstitute.org", role = c('ctb'))
    )
URL: https://github.com/samuel-marsh/scCustomize, https://samuel-marsh.github.io/scCustomize/, https://doi.org/10.5281/zenodo.5706431
BugReports: https://github.com/samuel-marsh/scCustomize/issues
Depends: R (>= 4.0.0),
         Seurat (>= 4.3.0.1)
Imports: 
    circlize,
    cli (>= 3.2.0),
    cowplot,
    data.table,
    dplyr,
    forcats,
    ggbeeswarm,
    ggplot2,
    ggprism,
    ggrastr,
    ggrepel,
    glue,
    grDevices,
    grid,
    janitor,
    lifecycle,
    magrittr,
    Matrix (>= 1.5.0),
    methods,
    paletteer,
    patchwork,
    pbapply,
    purrr,
    rlang (>= 1.1.3),
    scales,
    scattermore (>= 1.2), 
    SeuratObject (>= 5.0.0),
    stats,
    stringi,
    stringr,
    tibble,
    tidyr
Suggests:
    BiocFileCache,
    ComplexHeatmap,
    dittoSeq,
    DropletUtils,
    ggpubr,
    hdf5r,
    knitr,
    Nebulosa,
    remotes,
    reticulate,
    rliger,
    rmarkdown,
    scuttle,
    tidyselect,
    qs,
    viridis
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2