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Given a VCF containing samples 101, 102, and 103, the following seems to works: bcftools +mendelian2 test.vcf.gz -p 101,102,103
However, if I run the command instead to include an arbitrary sample for the child not in the VCF like so: bcftools +mendelian2 test.vcf.gz -p 0,102,103, then it actually reports that the mother is missing: The sample is not present: 103.
In reverse, if the mother is actually the missing one, it instead reports that the child id is missing.
The missing father does work as expected though,
The text was updated successfully, but these errors were encountered:
Thank you for reporting the bug, it is fixed now. Note the problem was only the error message, the program was assigning the family members correctly in the calculation
Given a VCF containing samples 101, 102, and 103, the following seems to works:
bcftools +mendelian2 test.vcf.gz -p 101,102,103
However, if I run the command instead to include an arbitrary sample for the child not in the VCF like so:
bcftools +mendelian2 test.vcf.gz -p 0,102,103
, then it actually reports that the mother is missing:The sample is not present: 103
.In reverse, if the mother is actually the missing one, it instead reports that the child id is missing.
The missing father does work as expected though,
The text was updated successfully, but these errors were encountered: