From ef8b974dee6d3bc9f56e39a75997a64a13cbcaa1 Mon Sep 17 00:00:00 2001 From: Petr Danecek Date: Wed, 2 Oct 2024 18:38:18 +0200 Subject: [PATCH] Update NEWS --- NEWS | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/NEWS b/NEWS index da0be32e..f7703821 100644 --- a/NEWS +++ b/NEWS @@ -8,6 +8,17 @@ Changes affecting specific commands: - New experimental plugin for scoring variants and assess site noisiness from a large number of unaffected parental samples +* bcftools query + + - The functions used in -i/-e filtering expressions (such as SUM, MEDIAN, etc) can be + now used in formatting expressions (#2271). + If the VCF contains INFO/AD and FORMAT/AD, try: + + bcftools query test.vcf -f '%CHROM:%POS \t [ %AD] \t [ %sSUM(FMT/AD)]' + bcftools query test.vcf -f '%CHROM:%POS \t [ %AD] \t [ %SUM(FMT/AD)]' + bcftools query test.vcf -f '%CHROM:%POS \t [ %AD] \t %SUM(FMT/AD)' + bcftools query test.vcf -f '%CHROM:%POS \t [ %AD] \t %SUM(INFO/AD)' + * bcftools +trio-dnm2 - Fix a problem with --strictly-novel option which would neglect the presence of the apparent de novo