gtcheck.5.vcf

##fileformat=VCFv4.2
##reference=ref.fa
##contig=<ID=1,assembly=b37,length=107349540>
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Genotype Likelihoods">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A
1	3775163	.	T	<NON_REF>	.	.	.	GT:PL	0/0:0,81,1800
1	3781099	.	T	.	.	.	.	GT:PL	0/0:0,120,1800
1	3781105	.	G	C	.	.	.	GT	0/0
1	3781111	.	G	C	.	.	.	PL	0,120,1800
1	3781602	.	A	C,T	.	.	.	GT:PL	0/0:0,120,1800
1	3782656	.	A	T	.	.	.	GT	0
1	3782657	.	A	T	.	.	.	PL	0,10
1	3782658	.	A	T	.	.	.	.	.