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I run plot_associations function but the image doesnt generate the scale at the right of the image.
Here is the call:
decoupler.plot_associations(
pdata,
uns_key='pca_anova', # Summary statistics from the anova tests
obsm_key='X_pca', # where the PCs are stored
stat_col='p_adj', # Which summary statistic to plot
obs_annotation_cols=['sample', 'clustifyr_cell_label_0_1'], # which sample annotations to plot
titles=['Principle component scores', 'Adjusted p-values from ANOVA'],
figsize=(7, 5),
n_factors=10,
save="/storage/Documents/service/externe/ilan/20241209_scRNAseq_FL_SA/out/06-DifferentialGeneExpression/test.png",
)
Here is the image produced:
My venv has the folowing packages installed:
marsilea 0.4.5 (also tried with 0.5.0)
decoupler 1.9.2
I also tried changing figsize with no success
Thanks for your help,
The text was updated successfully, but these errors were encountered:
Hi,
I run plot_associations function but the image doesnt generate the scale at the right of the image.
Here is the call:
Here is the image produced:

My venv has the folowing packages installed:
marsilea 0.4.5 (also tried with 0.5.0)
decoupler 1.9.2
I also tried changing figsize with no success
Thanks for your help,
The text was updated successfully, but these errors were encountered: