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environment.yml
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environment.yml
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name: saccharis_env
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- alsa-lib=1.2.10=hd590300_0
- argcomplete=3.1.2=pyhd8ed1ab_0
- argh=0.29.3=pyhd8ed1ab_0
- attr=2.5.1=h166bdaf_1
- attrs=23.1.0=pyh71513ae_1
- beautifulsoup4=4.12.2=pyha770c72_0
- biopython=1.81=py311h2582759_0
- blast=2.14.1=pl5321h6f7f691_0
- brotlipy=0.7.0=py311hd4cff14_1005
- bzip2=1.0.8=h7f98852_4
- c-ares=1.19.1=hd590300_0
- ca-certificates=2023.7.22=hbcca054_0
- cairo=1.16.0=h0c91306_1017
- certifi=2023.7.22=pyhd8ed1ab_0
- cffi=1.15.1=py311hb3a22ac_4
- charset-normalizer=3.2.0=pyhd8ed1ab_0
- cryptography=41.0.4=py311h63ff55d_0
- curl=8.3.0=hca28451_0
- dbcan=3.0.7=pyh5e36f6f_0
- dbus=1.13.6=h5008d03_3
- diamond=2.1.8=h43eeafb_0
- entrez-direct=16.2=he881be0_1
- expat=2.5.0=hcb278e6_1
- fasttree=2.1.11=h031d066_2
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=h267a509_2
- gettext=0.21.1=h27087fc_0
- gffutils=0.10.1=pyh864c0ab_1
- glib=2.78.0=hfc55251_0
- glib-tools=2.78.0=hfc55251_0
- gmp=6.2.1=h58526e2_0
- graphite2=1.3.13=h58526e2_1001
- gst-plugins-base=1.22.6=h8e1006c_0
- gstreamer=1.22.6=h98fc4e7_0
- harfbuzz=8.2.1=h3d44ed6_0
- hmmer=3.3.2=hdbdd923_4
- icu=73.2=h59595ed_0
- idna=3.4=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- jsonlines=3.0.0=pyhd8ed1ab_0
- keyutils=1.6.1=h166bdaf_0
- krb5=1.21.2=h659d440_0
- lame=3.100=h166bdaf_1003
- ld_impl_linux-64=2.40=h41732ed_0
- libblas=3.9.0=18_linux64_openblas
- libcap=2.69=h0f662aa_0
- libcblas=3.9.0=18_linux64_openblas
- libclang=15.0.7=default_h7634d5b_3
- libclang13=15.0.7=default_h9986a30_3
- libcups=2.3.3=h4637d8d_4
- libcurl=8.3.0=hca28451_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.12=hf998b51_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libflac=1.4.3=h59595ed_0
- libgcc-ng=13.2.0=h807b86a_2
- libgcrypt=1.10.1=h166bdaf_0
- libgfortran-ng=13.2.0=h69a702a_2
- libgfortran5=13.2.0=ha4646dd_2
- libglib=2.78.0=hebfc3b9_0
- libgomp=13.2.0=h807b86a_2
- libgpg-error=1.47=h71f35ed_0
- libiconv=1.17=h166bdaf_0
- libidn2=2.3.4=h166bdaf_0
- libjpeg-turbo=2.1.5.1=hd590300_1
- liblapack=3.9.0=18_linux64_openblas
- libllvm15=15.0.7=h5cf9203_3
- libnghttp2=1.52.0=h61bc06f_0
- libnsl=2.0.0=h7f98852_0
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.24=pthreads_h413a1c8_0
- libopus=1.3.1=h7f98852_1
- libpng=1.6.39=h753d276_0
- libpq=15.4=hfc447b1_0
- libprotobuf=3.20.3=h3eb15da_0
- libsndfile=1.2.2=hbc2eb40_0
- libsqlite=3.43.0=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-ng=13.2.0=h7e041cc_2
- libsystemd0=254=h3516f8a_0
- libunistring=0.9.10=h7f98852_0
- libuuid=2.38.1=h0b41bf4_0
- libvorbis=1.3.7=h9c3ff4c_0
- libxcb=1.15=h0b41bf4_0
- libxkbcommon=1.5.0=h5d7e998_3
- libxml2=2.11.5=h232c23b_1
- libxslt=1.1.37=h0054252_1
- libzlib=1.2.13=hd590300_5
- lxml=4.9.3=py311h1a07684_0
- lz4-c=1.9.4=hcb278e6_0
- markupsafe=2.1.3=py311h459d7ec_0
- modeltest-ng=0.1.7=h103dbdd_2
- mpg123=1.31.3=hcb278e6_0
- mpi=1.0=openmpi
- muscle=5.1=h4ac6f70_3
- mysql-common=8.0.33=hf1915f5_4
- mysql-libs=8.0.33=hca2cd23_4
- natsort=8.4.0=pyhd8ed1ab_0
- ncbi-datasets-pylib=15.19.1=pyhdfd78af_0
- ncbi-vdb=3.0.8=hdbdd923_0
- ncurses=6.4=hcb278e6_0
- nspr=4.35=h27087fc_0
- nss=3.92=h1d7d5a4_0
- numpy=1.26.0=py311h64a7726_0
- openmpi=4.1.5=h414af15_101
- openssl=3.1.3=hd590300_0
- ossuuid=1.6.2=hf484d3e_1000
- packaging=23.1=pyhd8ed1ab_0
- pcre=8.45=h9c3ff4c_0
- pcre2=10.40=hc3806b6_0
- perl=5.22.2.1=0
- perl-archive-tar=2.18=1
- perl-common-sense=3.74=0
- perl-exporter-tiny=0.042=1
- perl-json=2.90=1
- perl-json-xs=2.34=0
- perl-list-moreutils=0.413=1
- perl-threaded=5.32.1=hdfd78af_1
- perl-uri=1.71=0
- perl-xml-libxml=2.0124=0
- perl-xml-namespacesupport=1.11=0
- perl-xml-sax=0.99=0
- perl-xml-sax-base=1.08=0
- pip=23.2.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- ply=3.11=py_1
- prodigal=2.6.3=h031d066_6
- protobuf=3.20.3=py311hcafe171_1
- psutil=5.9.5=py311h2582759_0
- pthread-stubs=0.4=h36c2ea0_1001
- pulseaudio-client=16.1=hb77b528_5
- pycparser=2.21=pyhd8ed1ab_0
- pyfaidx=0.7.2.1=pyh7cba7a3_1
- pyopenssl=23.2.0=pyhd8ed1ab_1
- pyqt=5.15.9=py311hf0fb5b6_4
- pyqt5-sip=12.12.2=py311hb755f60_4
- pysocks=1.7.1=pyha2e5f31_6
- python=3.11.5=hab00c5b_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-dotenv=1.0.0=pyhd8ed1ab_1
- python-wget=3.2=py_0
- python_abi=3.11=4_cp311
- pyvcf3=1.0.3=pyhdfd78af_0
- qt-main=5.15.8=hc47bfe8_16
- raxml=8.2.12=h031d066_6
- raxml-ng=1.2.0=h6d1f11b_1
- readline=8.2=h8228510_1
- requests=2.31.0=pyhd8ed1ab_0
- scipy=1.11.2=py311h64a7726_1
- setuptools=68.2.2=pyhd8ed1ab_0
- simplejson=3.19.1=py311h2582759_0
- sip=6.7.11=py311hb755f60_0
- six=1.16.0=pyh6c4a22f_0
- soupsieve=2.5=pyhd8ed1ab_1
- tk=8.6.12=h27826a3_0
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.1=pyhd8ed1ab_0
- typing_extensions=4.8.0=pyha770c72_0
- tzdata=2023c=h71feb2d_0
- urllib3=1.26.15=pyhd8ed1ab_0
- wget=1.20.3=ha35d2d1_1
- wheel=0.41.2=pyhd8ed1ab_0
- xcb-util=0.4.0=hd590300_1
- xcb-util-image=0.4.0=h8ee46fc_1
- xcb-util-keysyms=0.4.0=h8ee46fc_1
- xcb-util-renderutil=0.3.9=hd590300_1
- xcb-util-wm=0.4.1=h8ee46fc_1
- xkeyboard-config=2.39=hd590300_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.1.1=hd590300_0
- xorg-libsm=1.2.4=h7391055_0
- xorg-libx11=1.8.6=h8ee46fc_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.11=hd590300_0
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xf86vidmodeproto=2.3.1=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hfc55251_0