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trakem2 converter script produces tilespecs with no channel name #68

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fcollman opened this issue Nov 29, 2017 · 2 comments
Open

trakem2 converter script produces tilespecs with no channel name #68

fcollman opened this issue Nov 29, 2017 · 2 comments

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@fcollman
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Contributor

An example...

{
"tileId" : "8",
"z" : 0.0,
"minX" : -4470.0,
"minY" : 3618.0,
"maxX" : 535.0,
"maxY" : 8663.0,
"width" : 5000.0,
"height" : 5000.0,
"mipmapLevels" : { },
"channels" : [
{
"minIntensity" : 255.0,
"maxIntensity" : 0.0,
"mipmapLevels" : {
"0" : {
"imageUrl" : "file:/nas3/data/M247514_Rorb_1/annotation/Site 3/S_000_2098862426/Tile_r1-c1_S_000_209886_flip.jpg",
"maskUrl" : "file:/nas3/data/M247514_Rorb_1/annotation/trakem2.1474404253542.1123465259.478816230/trakem2.masks/1.8.zip"
}
}
}
],
"transforms" : {
"type" : "list",
"specList" : [
{
"type" : "leaf",
"className" : "mpicbg.trakem2.transform.AffineModel2D",
"dataString" : "0.9997652837809011 -0.003813429188347456 0.0010519827088758399 1.0050585714544518 -4470.676115967191 3637.2127719311575"
}
]
},
"meshCellSize" : 64.0
},

@trautmane
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Collaborator

This is okay if the data only has one channel. Did you run into problems with this?

@fcollman
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Contributor Author

i think i did run into problems with this... but now i need to look...

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