Not refreshing, then moving folders upon restart

[xD34THROW]

Rubberduck version information
Version 2.5.2.5906
OS: Microsoft Windows NT 6.1.7601 Service Pack 1, x64
Host Product: Microsoft Office 2013 x64
Host Version: 15.0.5215.1000
Host Executable: EXCEL.EXE

Description
After adding a new module mdlDebug to folder 0 General Operations, and a new form frmEditJob to folder 1 Job Operations, neither showed up, despite 8 or 9 refreshes, until a complete restart of Excel. After restarting Excel, mdlDebug and frmEditJob showed up where they should, but there was a new subfolder under 2 Salesperson Operations. It appears as if Rubberduck somehow decided to insert the original 1 Job Operations folder under 2 Salesperson Operations. I did not do any sort of find/replace, rename, or refactor operation that would have caused this.

To Reproduce
Steps to reproduce the behavior:
Truthfully, I'm not sure beyond recreating the entire workbook and code from scratch.

Expected behavior
A clear and concise description of what you expected to happen.

Screenshots

Logfile
RubberduckLog.txt

[retailcoder]

linking #6239