Releases

v2.2.1 rpetit3/pasty "HB13" - 2024/08/25

adjust default parameters for --min-pident and --min-coverage to 90 each

v2.2.0 rpetit3/pasty "JBPA" - 2024/08/25

add default parameters for --min-pident and --min-coverage in the YAML

v2.1.0 rpetit3/pasty "LESB58" - 2024/08/19

add serogroups O15 and O17 #5 @StefaanVerwimp
update GHA tests with latest serogroups

v2.0.2 rpetit3/pasty "19BR+1" - 2024/08/14

no changes, fixing upstream bioconda install

v2.0.1 rpetit3/pasty "19BR" - 2024/08/14

updated for latest changes in camlhmp
updated GHA workflow

v2.0.0 rpetit3/pasty "PACS2" - 2024/07/22

pasty now uses the camlhmp framework for classification
fixed O2 and O5 serogroup classification

v1.0.3 rpetit3/pasty "PAC1" - 2023/08/04

fixed bug when int concatenated to str during blast
print the usage when no options provided
add --check to check for dependencies

v1.0.2 rpetit3/pasty "PA7" - 2022/12/01

improved coverage calculation
added more comments

v1.0.1 rpetit3/pasty "UCBPP-PA14" - 2022/11/30

improved outputs messaging
test data naming reflects expected serogroups
added expected results from tests
added gitpod support
updated CI

v1.0.0 rpetit3/pasty "PAO1" - 2022/07/20

Initial release of pasty