From 5b06610017ac3388e34695eae8fc8e6de69b457c Mon Sep 17 00:00:00 2001 From: Vikram Baliga Date: Sun, 24 Jan 2021 14:24:25 -0800 Subject: [PATCH] add reviewers to description file --- DESCRIPTION | 8 +++- codemeta.json | 2 +- docs/articles/data-import-cleaning.html | 2 +- docs/articles/managing-frame-gaps.html | 2 +- .../articles/visual-perception-functions.html | 2 +- docs/authors.html | 8 ++++ docs/index.html | 1 + docs/pkgdown.yml | 2 +- docs/reference/pathviewR-package.html | 29 +++++++----- docs/reference/read_motive_csv.html | 4 +- docs/sitemap.xml | 3 ++ man/pathviewr-package.Rd | 44 +++++++++++++++++++ 12 files changed, 87 insertions(+), 20 deletions(-) create mode 100644 man/pathviewr-package.Rd diff --git a/DESCRIPTION b/DESCRIPTION index 1bb9439..db8e833 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -16,7 +16,13 @@ Authors@R: family = "Press", role = "aut", email = "epress12@gmail.com", - comment = c(ORCID = "0000-0002-1944-3755")) + comment = c(ORCID = "0000-0002-1944-3755")), + person(given = "Anne-Sophie", + family = "Bonnet-Lebrun", + role = "rev"), + person(given = "Marco", + family = "Sciaini", + role = "rev") ) Description: Tools to import, clean, and visualize movement data, particularly from motion capture systems such as Optitrack's diff --git a/codemeta.json b/codemeta.json index 5aad6ac..a8c57df 100644 --- a/codemeta.json +++ b/codemeta.json @@ -258,7 +258,7 @@ } ], "readme": "https://github.com/vbaliga/pathviewr/blob/master/README.md", - "fileSize": "11553.429KB", + "fileSize": "11555.898KB", "contIntegration": "https://codecov.io/gh/vbaliga/pathviewr?branch=master", "developmentStatus": "https://www.repostatus.org/#active", "citation": [ diff --git a/docs/articles/data-import-cleaning.html b/docs/articles/data-import-cleaning.html index 238789d..95d12c8 100644 --- a/docs/articles/data-import-cleaning.html +++ b/docs/articles/data-import-cleaning.html @@ -89,7 +89,7 @@

Basics of data import and cleaning in pathviewr

Vikram B. Baliga

-

2021-01-14

+

2021-01-24

Source: vignettes/data-import-cleaning.Rmd diff --git a/docs/articles/managing-frame-gaps.html b/docs/articles/managing-frame-gaps.html index 562c2a5..d6250e7 100644 --- a/docs/articles/managing-frame-gaps.html +++ b/docs/articles/managing-frame-gaps.html @@ -89,7 +89,7 @@

Managing frame gaps with pathviewr

Melissa S. Armstrong

-

2021-01-14

+

2021-01-24

Source: vignettes/managing-frame-gaps.Rmd diff --git a/docs/articles/visual-perception-functions.html b/docs/articles/visual-perception-functions.html index 1def749..addec30 100644 --- a/docs/articles/visual-perception-functions.html +++ b/docs/articles/visual-perception-functions.html @@ -89,7 +89,7 @@

Estimating visual perceptions from tracking data

Eric R. Press

-

2021-01-14

+

2021-01-24

Source: vignettes/visual-perception-functions.Rmd diff --git a/docs/authors.html b/docs/authors.html index 07054af..ce1f9a4 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -162,6 +162,14 @@

Authors

Eric R. Press. Author.

+
  • +

    Anne-Sophie Bonnet-Lebrun. Reviewer. +

    +
    • +
  • +

    Marco Sciaini. Reviewer. +

    +
    • diff --git a/docs/index.html b/docs/index.html index 68b2895..639fcdd 100644 --- a/docs/index.html +++ b/docs/index.html @@ -378,6 +378,7 @@

    Developers

    Vikram B. Baliga
    Author, maintainer
  • Eric R. Press
    Author
    • +
  • All authors...
    • diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index cfa613d..41339f2 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -5,7 +5,7 @@ articles: data-import-cleaning: data-import-cleaning.html managing-frame-gaps: managing-frame-gaps.html visual-perception-functions: visual-perception-functions.html -last_built: 2021-01-14T19:25Z +last_built: 2021-01-24T22:20Z urls: reference: https://vbaliga.github.io/pathviewr//reference article: https://vbaliga.github.io/pathviewr//articles diff --git a/docs/reference/pathviewR-package.html b/docs/reference/pathviewR-package.html index 4ff65b6..93a4406 100644 --- a/docs/reference/pathviewR-package.html +++ b/docs/reference/pathviewR-package.html @@ -6,7 +6,7 @@ -pathviewR: Wrangle, Analyze, and Visualize Animal Movement Data — pathviewR-package • pathviewR +pathviewr: Wrangle, Analyze, and Visualize Animal Movement Data — pathviewr-package • pathviewr @@ -46,7 +46,7 @@ - + - + @@ -87,7 +87,7 @@ - pathviewR + pathviewr 0.9.4.9000 @@ -105,10 +105,10 @@ +

    Other contributors:

    + diff --git a/docs/reference/read_motive_csv.html b/docs/reference/read_motive_csv.html index b39cf9a..b1d9659 100644 --- a/docs/reference/read_motive_csv.html +++ b/docs/reference/read_motive_csv.html @@ -351,7 +351,7 @@

    Examp #> [919] 919 920 921 922 923 924 925 926 927 928 929 930 931 932 933 934 #> #> $.internal.selfref -#> <pointer: 0x7facb280d4e0> +#> <pointer: 0x7ffecd80d4e0> #> #> $class #> [1] "tbl_df" "tbl" "data.frame" @@ -363,7 +363,7 @@

    Examp #> [1] "pathviewr_motive_example_data.csv" #> #> $file_mtime -#> [1] "2021-01-14 11:25:50 PST" +#> [1] "2021-01-24 14:20:26 PST" #> #> $frame_rate #> [1] 100 diff --git a/docs/sitemap.xml b/docs/sitemap.xml index 8458484..393c6c5 100644 --- a/docs/sitemap.xml +++ b/docs/sitemap.xml @@ -75,6 +75,9 @@ https://vbaliga.github.io/pathviewr//reference/insert_treatments.html + + https://vbaliga.github.io/pathviewr//reference/pathviewr-package.html + https://vbaliga.github.io/pathviewr//reference/pipe.html diff --git a/man/pathviewr-package.Rd b/man/pathviewr-package.Rd new file mode 100644 index 0000000..f07ce5a --- /dev/null +++ b/man/pathviewr-package.Rd @@ -0,0 +1,44 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/pathviewr.R +\docType{package} +\name{pathviewr-package} +\alias{pathviewr} +\alias{pathviewr-package} +\title{pathviewr: Wrangle, Analyze, and Visualize Animal Movement Data} +\description{ +\if{html}{\figure{logo.png}{options: align='right' alt='logo' width='120'}} + +Tools to import, clean, and visualize movement data, + particularly from motion capture systems such as Optitrack's + Motive, the Straw Lab's Flydra, or from other sources. We provide + functions to remove artifacts, standardize tunnel position and tunnel + axes, select a region of interest, isolate specific trajectories, fill + gaps in trajectory data, and calculate 3D and per-axis velocity. For + experiments of visual guidance, we also provide functions that use + subject position to estimate perception of visual stimuli. +} +\seealso{ +Useful links: +\itemize{ + \item \url{https://github.com/vbaliga/pathviewr} + \item Report bugs at \url{https://github.com/vbaliga/pathviewr/issues} +} + +} +\author{ +\strong{Maintainer}: Vikram B. Baliga \email{vbaliga87@gmail.com} (\href{https://orcid.org/0000-0002-9367-8974}{ORCID}) + +Authors: +\itemize{ + \item Melissa S. Armstrong \email{melissa.armstrong@gmail.com} (\href{https://orcid.org/0000-0002-3059-0094}{ORCID}) + \item Eric R. Press \email{epress12@gmail.com} (\href{https://orcid.org/0000-0002-1944-3755}{ORCID}) +} + +Other contributors: +\itemize{ + \item Anne-Sophie Bonnet-Lebrun [reviewer] + \item Marco Sciaini [reviewer] +} + +} +\keyword{internal}