DESCRIPTION

Package: zFPKM
Title: A suite of functions to facilitate zFPKM transformations
Version: 1.0.4
Authors@R: 
    c(
      person("Ron", "Ammar", role = c("aut", "cre"), email = "ron.ammar@bms.com"),
      person("John", "Thompson", role = "aut", email = "john.thompson@bms.com"),
      person("Jaruwatana Sodai", "Lotharukpong", role = "ctb", email = "jaruwatana.lotharukpong@tuebingen.mpg.de", comment = c(ORCID = "0000-0002-3475-0980"))
    )
Description: Perform the zFPKM transform on RNA-seq FPKM data. This algorithm
    is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). Reference
    recommends using zFPKM > -3 to select expressed genes. Validated with encode
    open/closed chromosome data. Works well for gene level data using FPKM or TPM.
    Does not appear to calibrate well for transcript level data.
License: GPL-3 | file LICENSE
URL: https://github.com/ronammar/zFPKM/
BugReports: https://github.com/ronammar/zFPKM/issues
Imports: checkmate, dplyr, ggplot2, tidyr, SummarizedExperiment
Suggests: knitr, limma, edgeR, GEOquery, stringr, printr, rmarkdown
VignetteBuilder: knitr
biocViews: RNASeq, FeatureExtraction, Software, GeneExpression, ImmunoOncology
Depends: R (>= 3.4.0)
LazyData: true
RoxygenNote: 7.3.2
Encoding: UTF-8