diff --git a/Dockerfile b/Dockerfile index 9901a8d..8fc817b 100644 --- a/Dockerfile +++ b/Dockerfile @@ -131,7 +131,7 @@ RUN apt-get update \ r-base-dev=3.6.3-1bionic \ && rm -rf /var/lib/apt/lists/* \ && R -e 'install.packages(pkgs=c("BiocManager"),dependencies=TRUE)' \ - && R -e 'BiocManager::install(pkgs=c("tidyverse","devEMF","GenomicRanges","optparse","zoo","ggplot2","CopywriteR","HMMcopy","DNAcopy","GenomeInfoDb","Biostrings","data.table","RColorBrewer","pheatmap","biomaRt","BSgenome.Mmusculus.UCSC.mm10","BSgenome.Hsapiens.UCSC.hg38","BSgenome.Hsapiens.UCSC.hg19", "deconstructSigs", XML","LSD","randtests","svglite","dupRadar","SNPchip","TitanCNA","devtools","doMC","naturalsort","SomaticSignatures", "SomaticCancerAlterations"),version="3.10",ask=FALSE,update=TRUE)' + && R -e 'BiocManager::install(pkgs=c("tidyverse","devEMF","GenomicRanges","optparse","zoo","ggplot2","CopywriteR","HMMcopy","DNAcopy","GenomeInfoDb","Biostrings","data.table","RColorBrewer","pheatmap","biomaRt","BSgenome.Mmusculus.UCSC.mm10","BSgenome.Hsapiens.UCSC.hg38","BSgenome.Hsapiens.UCSC.hg19","deconstructSigs","XML","LSD","randtests","svglite","dupRadar","SNPchip","TitanCNA","devtools","doMC","naturalsort","SomaticSignatures","SomaticCancerAlterations"),version="3.10",ask=FALSE,update=TRUE)' RUN cd ${TEMP_DIR} \ && curl -fsSL https://download.docker.com/linux/debian/gpg | apt-key add - \