From 68b1997e6aa55c97834cf282455448cae43cab75 Mon Sep 17 00:00:00 2001 From: Sebastian Lange Date: Thu, 18 Jun 2020 08:09:50 +0200 Subject: [PATCH] Updated delly to 0.8.3 --- Dockerfile | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/Dockerfile b/Dockerfile index f3498be..d7d4672 100644 --- a/Dockerfile +++ b/Dockerfile @@ -187,7 +187,7 @@ RUN cd ${TEMP_DIR} \ && make install \ && cd ${TEMP_DIR} \ && rm -rf bedtools2 \ -# Delly2 v0.8.1 (https://github.com/dellytools/delly) +# Delly2 v0.8.3 (https://github.com/dellytools/delly) && apt update \ && apt install -y --no-install-recommends \ libboost-date-time-dev \ @@ -197,12 +197,12 @@ RUN cd ${TEMP_DIR} \ libboost-iostreams-dev \ && cd ${TEMP_DIR} \ && git clone https://github.com/dellytools/delly.git \ - && mv delly delly-0.8.1 \ - && cd delly-0.8.1 \ - && git checkout 'v0.8.1' \ + && mv delly delly-0.8.3 \ + && cd delly-0.8.3 \ + && git checkout 'v0.8.3' \ && make STATIC=1 prefix=/usr/local install \ && cd ${TEMP_DIR} \ - && rm -rf delly-0.8.1 \ + && rm -rf delly-0.8.3 \ # Fasta-to-Fastq (https://github.com/ekg/fasta-to-fastq/) && cd ${TEMP_DIR} \ && git clone https://github.com/ekg/fasta-to-fastq.git \