diff --git a/docs/_c_a_mexample.html b/docs/_c_a_mexample.html index 91aecb86dc7..6afd79624e7 100644 --- a/docs/_c_a_mexample.html +++ b/docs/_c_a_mexample.html @@ -107,7 +107,7 @@

-Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
diff --git a/docs/annotated.html b/docs/annotated.html index 20e9b4f9c2d..70bd4edb33c 100644 --- a/docs/annotated.html +++ b/docs/annotated.html @@ -101,12 +101,25 @@  CPIOc_put_vara_float  CPIOc_put_vara_int  CPIOc_put_vara_text + Cfile_desc_tFile descriptor structure + Cio_desc_tIO descriptor structure + Cio_regionIO region structure + Ciosystem_desc_tIO system descriptor structure + CmapsortUsed to sort map points in the subset rearranger + Cpio_swapm_defaultsSwapm defaults + Crearr_comm_fc_optRearranger comm flow control options + Crearr_optRearranger options + CUT_hash_bucket + CUT_hash_handle + CUT_hash_table + Cvar_desc_tVariable description structure + Cwmulti_bufferThe multi buffer holds data from one or more variables
-Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
diff --git a/docs/api.html b/docs/api.html index 97525a227e0..1b4cda757f8 100644 --- a/docs/api.html +++ b/docs/api.html @@ -149,7 +149,7 @@

-Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
diff --git a/docs/contributing_code.html b/docs/contributing_code.html index 9e35b709902..0bcb80804af 100644 --- a/docs/contributing_code.html +++ b/docs/contributing_code.html @@ -94,7 +94,7 @@

Indentation and Spacing

-Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
diff --git a/docs/decomp.html b/docs/decomp.html index fedf51e5a50..e84e8f34985 100644 --- a/docs/decomp.html +++ b/docs/decomp.html @@ -94,7 +94,7 @@

-Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
diff --git a/docs/deprecated.html b/docs/deprecated.html index 443a5e6f56b..5ac1d37d9d0 100644 --- a/docs/deprecated.html +++ b/docs/deprecated.html @@ -77,7 +77,7 @@
-Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
diff --git a/docs/dir_105b7c361203833ef447ec1f3c9e0fde.html b/docs/dir_105b7c361203833ef447ec1f3c9e0fde.html index dc6b5a16fbc..a1dd6703275 100644 --- a/docs/dir_105b7c361203833ef447ec1f3c9e0fde.html +++ b/docs/dir_105b7c361203833ef447ec1f3c9e0fde.html @@ -102,7 +102,7 @@
-Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
diff --git a/docs/dir_209baab7a174f8da935e472521be6c82.html b/docs/dir_209baab7a174f8da935e472521be6c82.html index 350e6007336..ae2508328aa 100644 --- a/docs/dir_209baab7a174f8da935e472521be6c82.html +++ b/docs/dir_209baab7a174f8da935e472521be6c82.html @@ -78,7 +78,7 @@
-Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
diff --git a/docs/dir_68267d1309a1af8e8297ef4c3efbcdba.html b/docs/dir_68267d1309a1af8e8297ef4c3efbcdba.html index 758346e4fad..ecae81d0e0f 100644 --- a/docs/dir_68267d1309a1af8e8297ef4c3efbcdba.html +++ b/docs/dir_68267d1309a1af8e8297ef4c3efbcdba.html @@ -75,7 +75,7 @@
-Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
diff --git a/docs/dir_6df6542b1223c38c3752260fabab64d0.html b/docs/dir_6df6542b1223c38c3752260fabab64d0.html index 338148199a3..f38b47d103b 100644 --- a/docs/dir_6df6542b1223c38c3752260fabab64d0.html +++ b/docs/dir_6df6542b1223c38c3752260fabab64d0.html @@ -68,6 +68,17 @@
c Directory Reference
+
+Directory dependency graph for c:
+
+
c
+ + + + + + +
@@ -84,7 +95,7 @@
-Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
diff --git a/docs/dir_d28a4824dc47e487b107a5db32ef43c4.html b/docs/dir_d28a4824dc47e487b107a5db32ef43c4.html index 3329aee9930..534d4160e19 100644 --- a/docs/dir_d28a4824dc47e487b107a5db32ef43c4.html +++ b/docs/dir_d28a4824dc47e487b107a5db32ef43c4.html @@ -68,6 +68,18 @@
examples Directory Reference
+
+Directory dependency graph for examples:
+
+
examples
+ + + + + + + +

Files

@@ -75,7 +87,7 @@
-Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
diff --git a/docs/dir_fbdd47254eba6596566cfbbd6768a55d.html b/docs/dir_fbdd47254eba6596566cfbbd6768a55d.html index a447b8260a2..d2d79030c97 100644 --- a/docs/dir_fbdd47254eba6596566cfbbd6768a55d.html +++ b/docs/dir_fbdd47254eba6596566cfbbd6768a55d.html @@ -71,14 +71,62 @@

Directories

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

Files

file  pio.h [code]
 Public headers for the PIO C interface.
 
file  pio_darray.c
 Public functions that read and write distributed arrays in PIO.
 
file  pio_darray_int.c
 Private functions to help read and write distributed arrays in PIO.
 
file  pio_file.c
 PIO File Handling.
 
file  pio_get_nc.c
 PIO functions to get data (excluding varm functions).
 
file  pio_getput_int.c
 Internal PIO functions to get and put attributes and data (excluding varm functions).
 
file  pio_internal.h [code]
 Private headers and defines for the PIO C interface.
 
file  pio_lists.c
 PIO list functions.
 
file  pio_msg.c
 PIO async message handling.
 
file  pio_nc.c
 PIO interfaces to NetCDF support functions.
 
file  pio_nc4.c
 Functions to wrap netCDF-4 functions for PIO.
 
file  pio_put_nc.c
 PIO functions to write data.
 
file  pio_rearrange.c
 Code to map IO to model decomposition.
 
file  pio_spmd.c
 Algorithms modeled after spmd_utils in the Community Atmosphere Model; C translation.
 
file  pioc.c
 Some initialization and support functions.
 
file  pioc_sc.c
 Compute start and count arrays for the box rearranger.
 
file  pioc_support.c
 Support functions for the PIO library.
 
-Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
diff --git a/docs/error.html b/docs/error.html index 3e5ef4dfefd..8adca2f4484 100644 --- a/docs/error.html +++ b/docs/error.html @@ -83,7 +83,7 @@
-Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
diff --git a/docs/examp.html b/docs/examp.html index 8b8eb15e00e..e9a7f92ba80 100644 --- a/docs/examp.html +++ b/docs/examp.html @@ -87,7 +87,7 @@

Other Examples

-Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
diff --git a/docs/example1_8c.html b/docs/example1_8c.html index 00a4ec02683..670a13df948 100644 --- a/docs/example1_8c.html +++ b/docs/example1_8c.html @@ -81,11 +81,15 @@ #include <stdlib.h>
#include <unistd.h>
#include <mpi.h>
-#include <pio.h>
+#include <pio.h>
Include dependency graph for example1.c:
+ + + +
+ + +

@@ -425,10 +429,10 @@

PIOc_Init_Intracomm(). It references an internal structure containing the general IO subsystem data and MPI structure. It is passed to PIOc_finalize() to free associated resources, after all I/O, but before MPI_Finalize is called.

The ncid of the netCDF file created in this example.

The ID of the netCDF varable in the example file.

-

The I/O description ID as passed back by PIOc_InitDecomp() and freed in PIOc_freedecomp().

+

The I/O description ID as passed back by PIOc_InitDecomp() and freed in PIOc_freedecomp().

A buffer for sample data. The size of this array will vary depending on how many processors are involved in the execution of the example code. It's length will be the same as elements_per_pe.

A 1-D array which holds the decomposition mapping for this example. The size of this array will vary depending on how many processors are involved in the execution of the example code. It's length will be the same as elements_per_pe.

Test filename.

@@ -475,7 +479,7 @@

-Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
diff --git a/docs/example1_8c__incl.map b/docs/example1_8c__incl.map index f5caa5c2268..7285a033775 100644 --- a/docs/example1_8c__incl.map +++ b/docs/example1_8c__incl.map @@ -1,2 +1,4 @@ + + diff --git a/docs/example1_8c__incl.md5 b/docs/example1_8c__incl.md5 index 0c7d75dd90a..06a473b0587 100644 --- a/docs/example1_8c__incl.md5 +++ b/docs/example1_8c__incl.md5 @@ -1 +1 @@ -c440a0a64b9cc9889236ec95c4506eb2 \ No newline at end of file +7153758fb231a546cd9562782b0185b0 \ No newline at end of file diff --git a/docs/example1_8c__incl.png b/docs/example1_8c__incl.png index ba6752254d1..9dbfa5d6223 100644 Binary files a/docs/example1_8c__incl.png and b/docs/example1_8c__incl.png differ diff --git a/docs/example2_8c.html b/docs/example2_8c.html index 07774f6030a..1c1df45a71a 100644 --- a/docs/example2_8c.html +++ b/docs/example2_8c.html @@ -80,12 +80,16 @@ #include <stdlib.h>
#include <unistd.h>
#include <mpi.h>
-#include <pio.h>
+#include <pio.h>
#include <math.h>
Include dependency graph for example2.c:
+ + + +
- - - + + + - +

@@ -185,13 +189,13 @@

int resultlen
 This is the length of the most recent MPI error message, stored int the global error string. More...
 
char dim_name [NDIM][NC_MAX_NAME+1] = {"timestep", "x", "y"}
 The dimension names. More...
 
char dim_name [NDIM][PIO_MAX_NAME+1] = {"timestep", "x", "y"}
 The dimension names. More...
 
int dim_len [NDIM] = {NC_UNLIMITED, X_DIM_LEN, Y_DIM_LEN}
 Length of the dimensions in the sample data. More...
 
PIO_Offset chunksize [NDIM] = {2, X_DIM_LEN/2, Y_DIM_LEN/2}
PIO_Offset chunksize [NDIM] = {2, X_DIM_LEN/2, Y_DIM_LEN/2}
 Length of chunksizes to use in netCDF-4 files. More...
 
@@ -607,10 +611,10 @@

PIOc_Init_Intracomm(). It references an internal structure containing the general IO subsystem data and MPI structure. It is passed to PIOc_finalize() to free associated resources, after all I/O, but before MPI_Finalize is called.

The ncid of the netCDF file created in this example.

The ID of the netCDF varable in the example file.

-

The I/O description ID as passed back by PIOc_InitDecomp() and freed in PIOc_freedecomp().

+

The I/O description ID as passed back by PIOc_InitDecomp() and freed in PIOc_freedecomp().

A buffer for sample data. The size of this array will vary depending on how many processors are involved in the execution of the example code. It's length will be the same as elements_per_pe.

A buffer for reading data back from the file. The size of this array will vary depending on how many processors are involved in the execution of the example code. It's length will be the same as elements_per_pe.

A 1-D array which holds the decomposition mapping for this example. The size of this array will vary depending on how many processors are involved in the execution of the example code. It's length will be the same as elements_per_pe.

@@ -626,7 +630,7 @@

- +
PIO_Offset chunksize[NDIM] = {2, X_DIM_LEN/2, Y_DIM_LEN/2}PIO_Offset chunksize[NDIM] = {2, X_DIM_LEN/2, Y_DIM_LEN/2}
@@ -651,14 +655,14 @@

-

◆ dim_name

+ +

◆ dim_name

- +
char dim_name[NDIM][NC_MAX_NAME+1] = {"timestep", "x", "y"}char dim_name[NDIM][PIO_MAX_NAME+1] = {"timestep", "x", "y"}
@@ -703,7 +707,7 @@

-Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
diff --git a/docs/example2_8c__incl.map b/docs/example2_8c__incl.map index 2d2df217c78..5a1e0f365fc 100644 --- a/docs/example2_8c__incl.map +++ b/docs/example2_8c__incl.map @@ -1,2 +1,4 @@ + + diff --git a/docs/example2_8c__incl.md5 b/docs/example2_8c__incl.md5 index f59b67118b9..2f029e414ad 100644 --- a/docs/example2_8c__incl.md5 +++ b/docs/example2_8c__incl.md5 @@ -1 +1 @@ -1192fe852105b87bcaeda8ef0725dbe2 \ No newline at end of file +3097b62480407e15ec602b6af990f9a4 \ No newline at end of file diff --git a/docs/example2_8c__incl.png b/docs/example2_8c__incl.png index 481cba329db..876c09d4ea7 100644 Binary files a/docs/example2_8c__incl.png and b/docs/example2_8c__incl.png differ diff --git a/docs/example_pio_8c.html b/docs/example_pio_8c.html index 5861423db33..69825d840e9 100644 --- a/docs/example_pio_8c.html +++ b/docs/example_pio_8c.html @@ -80,11 +80,15 @@ #include <stdlib.h>
#include <unistd.h>
#include <mpi.h>
-#include <pio.h>
+#include <pio.h>

Include dependency graph for examplePio.c:
+ + + +
+ + + + + +

@@ -169,7 +173,7 @@

Clean up allocated resources.

-

This function frees the memory used in this example. It calls the ParallelIO library function PIOc_freedecomp() to free decomposition resources. Then calles PIOc_finalize() and MPI_finalize() to free library resources.

+

This function frees the memory used in this example. It calls the ParallelIO library function PIOc_freedecomp() to free decomposition resources. Then calles PIOc_finalize() and MPI_finalize() to free library resources.

Parameters
@@ -202,7 +206,7 @@

Closes the netCDF file.

-

Uses the PIOc_closefile() function to close the netCDF sample file written by this example.

+

Uses the PIOc_closefile() function to close the netCDF sample file written by this example.

Parameters

[in]thisPointer to self.
@@ -236,7 +240,7 @@

PIOc_InitDecomp() to initalize the decomposition for this example. The arguments are:

  • the ID of the IO system, obtained from PIOc_init_intracomm().
  • the NetCDF type of the sample data - in this case a 4-byte integer.
  • the number of dimensions (1).
    • @@ -295,14 +299,14 @@

    PIOc_createfile() to create the netCDF output file. The format of the file is created in accordance with the iotype member variable, which specifies one of the following values:

    • PIO_IOTYPE_PNETCDF=1 Parallel Netcdf (parallel)
    • PIO_IOTYPE_NETCDF=2 Netcdf3 Classic format (serial)
    • PIO_IOTYPE_NETCDF4C=3 NetCDF4 (HDF5) compressed format (serial)
    • PIO_IOTYPE_NETCDF4P=4 NetCDF4 (HDF5) parallel
    -

    The PIOc_createfile() function has the following parameters:

    +

    The PIOc_createfile() function has the following parameters:

    • The IO system ID as set by PIOc_init_intracomm().
    • A pointer which will get the ncid of this file when it is created.
      • @@ -343,8 +347,8 @@

      PIOc_def_dim() and PIOc_def_var(). It then calls PIOc_enddef() to end the define mode of the file.

      +

      All of the functions take the pioFileDesc returned by PIOc_createfile(). This is the ncid of the netCDF file.

      Parameters

[in]thisPointer to self.
@@ -393,7 +397,7 @@

Error handling function.

-

On error, process with rank zero will print error message, the netCDF file will be closed with PIOc_closefile(), and MPI_Abort is called to end the example execution on all processes.

+

On error, process with rank zero will print error message, the netCDF file will be closed with PIOc_closefile(), and MPI_Abort is called to end the example execution on all processes.

Parameters

[in]thisPointer to self.
@@ -430,7 +434,7 @@

PIOc_Init_Intracomm(). This call takes the following parameters:

  • The MPI communicator specifying the invovled processors (MPI_COMM_WORLD, in this case, to use all processors).
  • The number of I/O tasks. In this example there will be one I/O task for each process.
    • @@ -506,7 +510,7 @@

    PIOc_read_darray() function.

    Parameters

[in]thisPointer to self.
@@ -540,7 +544,7 @@

PIOc_write_darray() function. After the write is complete, ensure the file is synced for all processes after the write.

Parameters

[in]thisPointer to self.
@@ -624,7 +628,7 @@

-Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
diff --git a/docs/example_pio_8c__incl.map b/docs/example_pio_8c__incl.map index 370decf8e3a..11e4d47bbb4 100644 --- a/docs/example_pio_8c__incl.map +++ b/docs/example_pio_8c__incl.map @@ -1,2 +1,4 @@ + + diff --git a/docs/example_pio_8c__incl.md5 b/docs/example_pio_8c__incl.md5 index e964b4b98ce..b1116fa8f53 100644 --- a/docs/example_pio_8c__incl.md5 +++ b/docs/example_pio_8c__incl.md5 @@ -1 +1 @@ -5c7fa3122920813477d1983179a7e269 \ No newline at end of file +16d22277ef70521f625639276c29f987 \ No newline at end of file diff --git a/docs/example_pio_8c__incl.png b/docs/example_pio_8c__incl.png index b0c5b034b56..d5271a78686 100644 Binary files a/docs/example_pio_8c__incl.png and b/docs/example_pio_8c__incl.png differ diff --git a/docs/example_pio_8f90.html b/docs/example_pio_8f90.html index eb18de3d5fe..1a1d913d984 100644 --- a/docs/example_pio_8f90.html +++ b/docs/example_pio_8f90.html @@ -149,7 +149,7 @@

-Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
diff --git a/docs/faq.html b/docs/faq.html index 1d00a702f75..5a7c3e37a98 100644 --- a/docs/faq.html +++ b/docs/faq.html @@ -74,14 +74,14 @@ Note that num_iotasks is the maximum number of IO tasks to use for an IO operation. The size of the field being read or written along with the tunable blocksize parameter, PIO_set_blocksize, determines the actual number of tasks used for a given IO operation.
How do I test if PIO is installed and working correctly?
-

The PIO Library distribution contains a testpio subdirectory with a number of programs to test the PIO library. Please see the Examples page for details.

+

The PIO Library distribution contains tests for PIO. They are run my 'make check'. The tests use mpiexec to run tests on 4, 8, or 16 processors.

-Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
diff --git a/docs/files.html b/docs/files.html index 5c3df4b5a36..d1c5ae4266c 100644 --- a/docs/files.html +++ b/docs/files.html @@ -66,26 +66,45 @@
Here is a list of all documented files with brief descriptions:

[in]thisPointer to self.
- - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
 example1.cA simple C example for the ParallelIO Library
 example2.cA simple C example for the ParallelIO Library
 examplePio.cA simple C example for the ParallelIO Library
 examplePio.f90A simple Fortran example for the ParallelIO Library
 pio.F90User interface Module for PIO, this is the only file a user program should 'use'
 pio_kinds.F90Basic data types
 pio_nc4.cFunctions to wrap netCDF-4 functions for PIO
 pio_support.F90Internal code for compiler workarounds, aborts and debug functions
 pio_types.F90Derived datatypes and constants for PIO Fortran API
 piodarray.F90Read and write routines for decomposed data
 piolib_mod.F90Initialization Routines for PIO
 pionfatt_mod.F90NetCDF attribute interface to PIO
 pionfget_mod.F90Read Routines for non-decomposed NetCDF data
 pionfput_mod.F90Write routines for non-decomposed NetCDF data
 bget.h
 dtypes.h
 example1.cA simple C example for the ParallelIO Library
 example2.cA simple C example for the ParallelIO Library
 examplePio.cA simple C example for the ParallelIO Library
 examplePio.f90A simple Fortran example for the ParallelIO Library
 pio.F90User interface Module for PIO, this is the only file a user program should 'use'
 pio.hPublic headers for the PIO C interface
 pio_darray.cPublic functions that read and write distributed arrays in PIO
 pio_darray_int.cPrivate functions to help read and write distributed arrays in PIO
 pio_file.cPIO File Handling
 pio_get_nc.cPIO functions to get data (excluding varm functions)
 pio_getput_int.cInternal PIO functions to get and put attributes and data (excluding varm functions)
 pio_internal.hPrivate headers and defines for the PIO C interface
 pio_kinds.F90Basic data types
 pio_lists.cPIO list functions
 pio_msg.cPIO async message handling
 pio_nc.cPIO interfaces to NetCDF support functions
 pio_nc4.cFunctions to wrap netCDF-4 functions for PIO
 pio_put_nc.cPIO functions to write data
 pio_rearrange.cCode to map IO to model decomposition
 pio_spmd.cAlgorithms modeled after spmd_utils in the Community Atmosphere Model; C translation
 pio_support.F90Internal code for compiler workarounds, aborts and debug functions
 pio_types.F90Derived datatypes and constants for PIO Fortran API
 pioc.cSome initialization and support functions
 pioc_sc.cCompute start and count arrays for the box rearranger
 pioc_support.cSupport functions for the PIO library
 piodarray.F90Read and write routines for decomposed data
 piolib_mod.F90Initialization Routines for PIO
 pionfatt_mod.F90NetCDF attribute interface to PIO
 pionfget_mod.F90Read Routines for non-decomposed NetCDF data
 pionfput_mod.F90Write routines for non-decomposed NetCDF data
 uthash.h
-Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
diff --git a/docs/globals.html b/docs/globals.html index c346e9d424e..7df33b362a0 100644 --- a/docs/globals.html +++ b/docs/globals.html @@ -62,194 +62,29 @@
Here is a list of all documented file members with links to the documentation:
-

- c -

-Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
diff --git a/docs/globals_defs.html b/docs/globals_defs.html index 787c467c645..dc6a20ab073 100644 --- a/docs/globals_defs.html +++ b/docs/globals_defs.html @@ -60,28 +60,96 @@
- 
-Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
diff --git a/docs/globals_func.html b/docs/globals_func.html index 9bc3ae1f2e3..8b8ae0ae939 100644 --- a/docs/globals_func.html +++ b/docs/globals_func.html @@ -60,88 +60,31 @@
- 
-Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
diff --git a/docs/globals_type.html b/docs/globals_type.html index 6bd9538248a..c264c513bbe 100644 --- a/docs/globals_type.html +++ b/docs/globals_type.html @@ -64,11 +64,41 @@
  • examplePioClass : examplePio.c
    • +
  • file_desc_t +: pio.h +
    • +
  • io_desc_t +: pio.h +
    • +
  • io_region +: pio.h +
    • +
  • iosystem_desc_t +: pio.h +
    • +
  • mapsort +: pio_internal.h +
    • +
  • pio_swapm_defaults +: pio_internal.h +
    • +
  • rearr_comm_fc_opt_t +: pio.h +
    • +
  • rearr_opt_t +: pio.h +
    • +
  • var_desc_t +: pio.h +
    • +
  • wmulti_buffer +: pio.h +
    • -Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/globals_vars.html b/docs/globals_vars.html index 7a995df30fb..a401e0917f6 100644 --- a/docs/globals_vars.html +++ b/docs/globals_vars.html @@ -61,19 +61,31 @@
     
    -Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/graph_legend.html b/docs/graph_legend.html index a143a6256cf..6e000898541 100644 --- a/docs/graph_legend.html +++ b/docs/graph_legend.html @@ -96,7 +96,7 @@
    -Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__advanceframe.html b/docs/group___p_i_o__advanceframe.html index 56b1bdf718e..e912396e032 100644 --- a/docs/group___p_i_o__advanceframe.html +++ b/docs/group___p_i_o__advanceframe.html @@ -104,7 +104,7 @@

    Parameters
    - +
    [in,out]vardesc
    [in,out]vardescVariable description structure.

    @@ -114,7 +114,7 @@

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__closefile.html b/docs/group___p_i_o__closefile.html index 7e2482a41ed..bde5f211ec2 100644 --- a/docs/group___p_i_o__closefile.html +++ b/docs/group___p_i_o__closefile.html @@ -94,7 +94,7 @@

    Parameters
    - +
    file
    fileFile descriptor structure. This structure holds information associated with each open file
    @@ -104,7 +104,7 @@

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__createfile.html b/docs/group___p_i_o__createfile.html index 20c647f4b1f..bb3fdbc912c 100644 --- a/docs/group___p_i_o__createfile.html +++ b/docs/group___p_i_o__createfile.html @@ -72,6 +72,12 @@

    integer function piolib_mod::createfile (iosystem, file, iotype, fname, amode_in)
     Create a NetCDF or PNetCDF file using PIO. More...
     
    int PIOc_createfile (int iosysid, int *ncidp, int *iotype, const char *filename, int mode)
     Create a new file using pio. More...
     
    int PIOc_createfile_int (int iosysid, int *ncidp, int *iotype, const char *filename, int mode)
     Create a new file using pio. More...
     

    Detailed Description

    Function/Subroutine Documentation

    @@ -143,12 +149,133 @@

    +

    ◆ PIOc_createfile()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_createfile (int iosysid,
    int * ncidp,
    int * iotype,
    const char * filename,
    int mode 
    )
    +
    + +

    Create a new file using pio.

    +

    Input parameters are read on comp task 0 and ignored elsewhere. NOFILL mode will be turned on in all cases.

    +
    Parameters
    + + + + + + +
    iosysidA defined pio system ID, obtained from PIOc_InitIntercomm() or PIOc_InitAsync().
    ncidpA pointer that gets the ncid of the newly created file.
    iotypeA pointer to a pio output format. Must be one of PIO_IOTYPE_PNETCDF, PIO_IOTYPE_NETCDF, PIO_IOTYPE_NETCDF4C, or PIO_IOTYPE_NETCDF4P.
    filenameThe filename to create.
    modeThe netcdf mode for the create operation.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_createfile_int()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_createfile_int (int iosysid,
    int * ncidp,
    int * iotype,
    const char * filename,
    int mode 
    )
    +
    + +

    Create a new file using pio.

    +

    This is an internal function that is called by both PIOc_create() and PIOc_createfile(). Input parameters are read on comp task 0 and ignored elsewhere.

    +
    Parameters
    + + + + + + +
    iosysidA defined pio system ID, obtained from PIOc_Init_Intercomm() or PIOc_InitAsync().
    ncidpA pointer that gets the ncid of the newly created file.
    iotypeA pointer to a pio output format. Must be one of PIO_IOTYPE_PNETCDF, PIO_IOTYPE_NETCDF, PIO_IOTYPE_NETCDF4C, or PIO_IOTYPE_NETCDF4P.
    filenameThe filename to create.
    modeThe netcdf mode for the create operation.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__def__dim.html b/docs/group___p_i_o__def__dim.html index a65e904fa81..62d6da0e182 100644 --- a/docs/group___p_i_o__def__dim.html +++ b/docs/group___p_i_o__def__dim.html @@ -84,6 +84,9 @@

    integer function pio_nf::def_dim_id (ncid, name, len, dimid)
     Defines the netcdf dimension. More...
     
    int PIOc_def_dim (int ncid, const char *name, PIO_Offset len, int *idp)
     The PIO-C interface for the NetCDF function nc_def_dim. More...
     

    Detailed Description

    A set of functions to define dimensions and their attributes in NetCDF files.

    @@ -213,7 +216,7 @@

    Parameters
    - + @@ -263,12 +266,64 @@

    +

    ◆ PIOc_def_dim()

    + +
    +
    +

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    name: The name of the dimension to define
    len: The size of the dimension
    dimid: The dimension identifier
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_def_dim (int ncid,
    const char * name,
    PIO_Offset len,
    int * idp 
    )
    +
    + +

    The PIO-C interface for the NetCDF function nc_def_dim.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm. For more information on the underlying NetCDF commmand please read about this function in the NetCDF documentation at: http://www.unidata.ucar.edu/software/netcdf/docs/group__dimensions.html

    +
    Parameters
    + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    idpa pointer that will get the id of the variable or attribute.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__def__var.html b/docs/group___p_i_o__def__var.html index c08e1771d08..24cfdc7b3b6 100644 --- a/docs/group___p_i_o__def__var.html +++ b/docs/group___p_i_o__def__var.html @@ -83,22 +83,28 @@ integer function pio_nf::def_var_md_id (ncid, name, type, dimids, varid)  Defines a netcdf variable.
      +int PIOc_def_var (int ncid, const char *name, nc_type xtype, int ndims, const int *dimidsp, int *varidp) + The PIO-C interface for the NetCDF function nc_def_var. More...
    +  +int PIOc_def_var_fill (int ncid, int varid, int fill_mode, const void *fill_valuep) + Set the fill value for a variable. More...
    +  int PIOc_def_var_deflate (int ncid, int varid, int shuffle, int deflate, int deflate_level)  Set deflate (zlib) settings for a variable. More...
      -int PIOc_def_var_chunking (int ncid, int varid, int storage, const PIO_Offset *chunksizesp) +int PIOc_def_var_chunking (int ncid, int varid, int storage, const PIO_Offset *chunksizesp)  Set chunksizes for a variable. More...
      int PIOc_def_var_endian (int ncid, int varid, int endian)  Set chunksizes for a variable. More...
      -int PIOc_set_chunk_cache (int iosysid, int iotype, PIO_Offset size, PIO_Offset nelems, float preemption) +int PIOc_set_chunk_cache (int iosysid, int iotype, PIO_Offset size, PIO_Offset nelems, float preemption)  Set chunk cache netCDF files to be opened/created. More...
      -int PIOc_get_chunk_cache (int iosysid, int iotype, PIO_Offset *sizep, PIO_Offset *nelemsp, float *preemptionp) +int PIOc_get_chunk_cache (int iosysid, int iotype, PIO_Offset *sizep, PIO_Offset *nelemsp, float *preemptionp)  Get current file chunk cache settings from HDF5. More...
      -int PIOc_set_var_chunk_cache (int ncid, int varid, PIO_Offset size, PIO_Offset nelems, float preemption) +int PIOc_set_var_chunk_cache (int ncid, int varid, PIO_Offset size, PIO_Offset nelems, float preemption)  Set chunksizes for a variable. More...
      @@ -145,10 +151,10 @@

    Parameters
    - + - +
    File
    FileFile descriptor structure. This structure holds information associated with each open file
    name: The name of the variable to define
    type: The type of variable
    vardesc
    vardescVariable description structure.
    @@ -208,11 +214,11 @@

    Parameters
    - + - +
    File
    FileFile descriptor structure. This structure holds information associated with each open file
    name: The name of the variable to define
    type: The type of variable
    dimids: The dimension identifier returned by PIO_def_dim
    vardesc
    vardescVariable description structure.
    @@ -223,6 +229,71 @@

    +

    ◆ PIOc_def_var()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_def_var (int ncid,
    const char * name,
    nc_type xtype,
    int ndims,
    const int * dimidsp,
    int * varidp 
    )
    +
    + +

    The PIO-C interface for the NetCDF function nc_def_var.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm. For more information on the underlying NetCDF commmand please read about this function in the NetCDF documentation at: http://www.unidata.ucar.edu/software/netcdf/docs/group__variables.html

    +
    Parameters
    + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    varidpa pointer that will get the variable id
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    @@ -252,7 +323,7 @@

    - const PIO_Offset *  + const PIO_Offset *  chunksizesp  @@ -391,6 +462,62 @@

    Returns
    PIO_NOERR for success, otherwise an error code.
    Author
    Ed Hartnett
    + + +     +

    ◆ PIOc_def_var_fill()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_def_var_fill (int ncid,
    int varid,
    int fill_mode,
    const void * fill_valuep 
    )
    +
    + +

    Set the fill value for a variable.

    +

    See the netCDF variable documentation for details about the operation of this function.

    +

    When the fill mode for the file is NC_FILL, then fill values are used for missing data. This function sets the fill value to be used for a variable. If no specific fill value is set (as a _FillValue attribute), then the default fill values from netcdf.h are used.

    +

    NetCDF-4 and pnetcdf files allow setting fill_mode (to NC_FILL or NC_NOFILL) on a per-variable basis. NetCDF classic only allows the fill_mode setting to be set for the whole file. For this function, the fill_mode parameter is ignored for classic files. Set the file-level fill mode with PIOc_set_fill().

    +
    Parameters
    + + + + + +
    ncidthe ncid of the open file.
    varidthe ID of the variable to set chunksizes for.
    fill_modefill mode for this variable (NC_FILL or NC_NOFILL)
    fill_valuepointer to the fill value to be used if fill_mode is set to NC_FILL.
    +
    +
    +
    Returns
    PIO_NOERR for success, otherwise an error code.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    @@ -414,13 +541,13 @@

    - PIO_Offset *  + PIO_Offset *  sizep, - PIO_Offset *  + PIO_Offset *  nelemsp, @@ -477,13 +604,13 @@

    - PIO_Offset  + PIO_Offset  size, - PIO_Offset  + PIO_Offset  nelems, @@ -539,13 +666,13 @@

    - PIO_Offset  + PIO_Offset  size, - PIO_Offset  + PIO_Offset  nelems, @@ -583,7 +710,7 @@

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__enddef.html b/docs/group___p_i_o__enddef.html index b839e28b644..2e9e0395d7f 100644 --- a/docs/group___p_i_o__enddef.html +++ b/docs/group___p_i_o__enddef.html @@ -73,8 +73,11 @@  Exits netcdf define mode. More...
      integer function pio_nf::enddef_id (ncid) - Wrapper for the C function PIOc_enddef . More...
    + Wrapper for the C function PIOc_enddef . More...
      +int PIOc_enddef (int ncid) + The PIO-C interface for the NetCDF function nc_enddef. More...
    + 

    Detailed Description

    Function/Subroutine Documentation

    @@ -97,7 +100,7 @@

    Parameters
    - +
    File
    FileFile descriptor structure. This structure holds information associated with each open file
    @@ -126,14 +129,43 @@

    -

    Wrapper for the C function PIOc_enddef .

    +

    Wrapper for the C function PIOc_enddef .

    + + + + +

    ◆ PIOc_enddef()

    + +
    +
    + + + + + + + + +
    int PIOc_enddef (int ncid)
    +
    + +

    The PIO-C interface for the NetCDF function nc_enddef.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm. For more information on the underlying NetCDF commmand please read about this function in the NetCDF documentation at: http://www.unidata.ucar.edu/software/netcdf/docs/group__datasets.html

    +
    Parameters
    + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__error__method.html b/docs/group___p_i_o__error__method.html index 6f36f08c030..2d7a3f5c489 100644 --- a/docs/group___p_i_o__error__method.html +++ b/docs/group___p_i_o__error__method.html @@ -60,20 +60,163 @@
    +
    +Functions/Subroutines
    error_methods
    + + + + + + + + + + + +

    +Functions/Subroutines

    int PIOc_Set_File_Error_Handling (int ncid, int method)
     Set the error handling method to be used for subsequent pio library calls, returns the previous method setting. More...
     
    int PIOc_Set_IOSystem_Error_Handling (int iosysid, int method)
     Set the error handling method used for subsequent calls. More...
     
    int PIOc_set_iosystem_error_handling (int iosysid, int method, int *old_method)
     Set the error handling method used for subsequent calls for this IO system. More...
     
    +

    Detailed Description

    The three types of error handling methods are:

    • PIO_INTERNAL_ERROR : abort on error from any task
    • PIO_BCAST_ERROR : broadcast an error from io_rank 0 to all tasks in comm
    • PIO_RETURN_ERROR : do nothing - allow the user to handle it

    Use this instead of ios to set error handling for the library.

    +

    Function/Subroutine Documentation

    + +

    ◆ PIOc_Set_File_Error_Handling()

    + +
    +
    + + + + + + + + + + + + + + + + + + +
    int PIOc_Set_File_Error_Handling (int ncid,
    int method 
    )
    +
    + +

    Set the error handling method to be used for subsequent pio library calls, returns the previous method setting.

    +

    Note that this changes error handling for the IO system that was used when this file was opened. Other files opened with the same IO system will also he affected by this call. This function is supported but deprecated. New code should use PIOc_set_iosystem_error_handling(). This method has no way to return an error, so any failure will result in MPI_Abort.

    +
    Parameters
    + + + +
    ncidthe ncid of an open file
    methodthe error handling method
    +
    +
    +
    Returns
    old error handler
    +
    Author
    Jim Edwards
    + +
    +
    + +

    ◆ PIOc_Set_IOSystem_Error_Handling()

    + +
    +
    + + + + + + + + + + + + + + + + + + +
    int PIOc_Set_IOSystem_Error_Handling (int iosysid,
    int method 
    )
    +
    + +

    Set the error handling method used for subsequent calls.

    +

    This function is deprecated. New code should use PIOc_set_iosystem_error_handling(). This method has no way to return an error, so any failure will result in MPI_Abort.

    +
    Parameters
    + + + +
    iosysidthe IO system ID
    methodthe error handling method
    +
    +
    +
    Returns
    old error handler
    +
    Author
    Jim Edwards
    + +
    +
    + +

    ◆ PIOc_set_iosystem_error_handling()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_set_iosystem_error_handling (int iosysid,
    int method,
    int * old_method 
    )
    +
    + +

    Set the error handling method used for subsequent calls for this IO system.

    +
    Parameters
    + + + + +
    iosysidthe IO system ID. Passing PIO_DEFAULT instead changes the default error handling for the library.
    methodthe error handling method
    old_methodpointer to int that will get old method. Ignored if NULL.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__finalize.html b/docs/group___p_i_o__finalize.html index 0079043b887..a4c9f45a72a 100644 --- a/docs/group___p_i_o__finalize.html +++ b/docs/group___p_i_o__finalize.html @@ -75,6 +75,9 @@ subroutine piolib_mod::finalize (iosystem, ierr)  finalizes the pio subsystem. More...
      +int PIOc_finalize (int iosysid) + Clean up internal data structures, free MPI resources, and exit the pio library. More...
    + 

    Detailed Description

    Shuts down and cleans up any memory associated with the pio library.

    @@ -108,7 +111,7 @@

    Parameters
    - +
    iosystem:
    iosystem: IO descriptor structure. This structure defines the mapping for a given variable between compute and IO decomposition.
    @@ -119,12 +122,40 @@

    +

    ◆ PIOc_finalize()

    + +
    +
    + + + + + + + + +
    int PIOc_finalize (int iosysid)
    +
    + +

    Clean up internal data structures, free MPI resources, and exit the pio library.

    +
    Parameters
    + + +
    iosysidthe io system ID provided by PIOc_Init_Intracomm().
    +
    +
    +
    Returns
    0 for success or non-zero for error.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__freedecomp.html b/docs/group___p_i_o__freedecomp.html index e80d1f9ac47..cec20b62a3d 100644 --- a/docs/group___p_i_o__freedecomp.html +++ b/docs/group___p_i_o__freedecomp.html @@ -111,8 +111,8 @@

    Parameters
    - - + +
    file
    iodesc:
    fileFile descriptor structure. This structure holds information associated with each open file
    iodesc: IO descriptor structure. This structure defines the mapping for a given variable between compute and IO decomposition.
    @@ -155,7 +155,7 @@

    Parameters
    - +
    ios: a defined pio system descriptor created by call to PIO_init (see PIO_types)
    iodesc
    iodescIO descriptor structure. This structure defines the mapping for a given variable between compute and IO decomposition.
    @@ -165,7 +165,7 @@

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__get__att.html b/docs/group___p_i_o__get__att.html index 30fa5ba3820..cd06ef41aca 100644 --- a/docs/group___p_i_o__get__att.html +++ b/docs/group___p_i_o__get__att.html @@ -90,6 +90,45 @@ integer function pionfatt_mod::get_att_1d_double (File, varid, name, values)  Reads an netcdf attribute from a file. More...
      +int PIOc_get_att (int ncid, int varid, const char *name, void *ip) + Get the value of an attribute of any type, with no type conversion. More...
    +  +int PIOc_get_att_double (int ncid, int varid, const char *name, double *ip) + Get the value of an 64-bit floating point array attribute. More...
    +  +int PIOc_get_att_uchar (int ncid, int varid, const char *name, unsigned char *ip) + Get the value of an 8-bit unsigned char array attribute. More...
    +  +int PIOc_get_att_ushort (int ncid, int varid, const char *name, unsigned short *ip) + Get the value of an 16-bit unsigned integer array attribute. More...
    +  +int PIOc_get_att_uint (int ncid, int varid, const char *name, unsigned int *ip) + Get the value of an 32-bit unsigned integer array attribute. More...
    +  +int PIOc_get_att_long (int ncid, int varid, const char *name, long *ip) + Get the value of an 32-bit ingeger array attribute. More...
    +  +int PIOc_get_att_text (int ncid, int varid, const char *name, char *ip) + Get the value of an text attribute. More...
    +  +int PIOc_get_att_schar (int ncid, int varid, const char *name, signed char *ip) + Get the value of an 8-bit signed char array attribute. More...
    +  +int PIOc_get_att_ulonglong (int ncid, int varid, const char *name, unsigned long long *ip) + Get the value of an 64-bit unsigned integer array attribute. More...
    +  +int PIOc_get_att_short (int ncid, int varid, const char *name, short *ip) + Get the value of an 16-bit integer array attribute. More...
    +  +int PIOc_get_att_int (int ncid, int varid, const char *name, int *ip) + Get the value of an 32-bit integer array attribute. More...
    +  +int PIOc_get_att_longlong (int ncid, int varid, const char *name, long long *ip) + Get the value of an 64-bit integer array attribute. More...
    +  +int PIOc_get_att_float (int ncid, int varid, const char *name, float *ip) + Get the value of an 32-bit floating point array attribute. More...
    + 

    Detailed Description

    Reads an netcdf attribute from a file.

    @@ -135,7 +174,7 @@

    Parameters
    - + @@ -192,7 +231,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    name: name of the attribute to get
    values: The value for the netcdf attribute
    - + @@ -249,7 +288,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    name: name of the attribute to get
    values: The value for the netcdf attribute
    - + @@ -306,8 +345,8 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    name: name of the attribute to get
    values: The value for the netcdf attribute
    - - + +
    File
    varDesc
    FileFile descriptor structure. This structure holds information associated with each open file
    varDescVariable description structure.
    name: name of the attribute to get
    values: The value for the netcdf attribute
    @@ -363,8 +402,8 @@

    Parameters
    - - + +
    File
    varDesc
    FileFile descriptor structure. This structure holds information associated with each open file
    varDescVariable description structure.
    name: name of the attribute to get
    values: The value for the netcdf attribute
    @@ -420,7 +459,7 @@

    Parameters
    - + @@ -434,12 +473,715 @@

    +

    ◆ PIOc_get_att()

    + +
    +
    +

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    name: name of the attribute to get
    values: The value for the netcdf attribute
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_get_att (int ncid,
    int varid,
    const char * name,
    void * ip 
    )
    +
    + +

    Get the value of an attribute of any type, with no type conversion.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute to get
    ipa pointer that will get the attribute value.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    + + +

    ◆ PIOc_get_att_double()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_get_att_double (int ncid,
    int varid,
    const char * name,
    double * ip 
    )
    +
    + +

    Get the value of an 64-bit floating point array attribute.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute to get
    ipa pointer that will get the attribute value.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_get_att_float()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_get_att_float (int ncid,
    int varid,
    const char * name,
    float * ip 
    )
    +
    + +

    Get the value of an 32-bit floating point array attribute.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute to get
    ipa pointer that will get the attribute value.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_get_att_int()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_get_att_int (int ncid,
    int varid,
    const char * name,
    int * ip 
    )
    +
    + +

    Get the value of an 32-bit integer array attribute.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute to get
    ipa pointer that will get the attribute value.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_get_att_long()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_get_att_long (int ncid,
    int varid,
    const char * name,
    long * ip 
    )
    +
    + +

    Get the value of an 32-bit ingeger array attribute.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute to get
    ipa pointer that will get the attribute value.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_get_att_longlong()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_get_att_longlong (int ncid,
    int varid,
    const char * name,
    long long * ip 
    )
    +
    + +

    Get the value of an 64-bit integer array attribute.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute to get
    ipa pointer that will get the attribute value.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_get_att_schar()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_get_att_schar (int ncid,
    int varid,
    const char * name,
    signed char * ip 
    )
    +
    + +

    Get the value of an 8-bit signed char array attribute.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute to get
    ipa pointer that will get the attribute value.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_get_att_short()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_get_att_short (int ncid,
    int varid,
    const char * name,
    short * ip 
    )
    +
    + +

    Get the value of an 16-bit integer array attribute.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute to get
    ipa pointer that will get the attribute value.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_get_att_text()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_get_att_text (int ncid,
    int varid,
    const char * name,
    char * ip 
    )
    +
    + +

    Get the value of an text attribute.

    +

    There is no type conversion with this call. If the attribute is not of type NC_CHAR, then an error will be returned.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute to get
    ipa pointer that will get the attribute value.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_get_att_uchar()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_get_att_uchar (int ncid,
    int varid,
    const char * name,
    unsigned char * ip 
    )
    +
    + +

    Get the value of an 8-bit unsigned char array attribute.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute to get
    ipa pointer that will get the attribute value.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_get_att_uint()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_get_att_uint (int ncid,
    int varid,
    const char * name,
    unsigned int * ip 
    )
    +
    + +

    Get the value of an 32-bit unsigned integer array attribute.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute to get
    ipa pointer that will get the attribute value.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_get_att_ulonglong()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_get_att_ulonglong (int ncid,
    int varid,
    const char * name,
    unsigned long long * ip 
    )
    +
    + +

    Get the value of an 64-bit unsigned integer array attribute.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute to get
    ipa pointer that will get the attribute value.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_get_att_ushort()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_get_att_ushort (int ncid,
    int varid,
    const char * name,
    unsigned short * ip 
    )
    +
    + +

    Get the value of an 16-bit unsigned integer array attribute.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute to get
    ipa pointer that will get the attribute value.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__get__local__array__size.html b/docs/group___p_i_o__get__local__array__size.html index d8f0bf4bcca..55c197984ab 100644 --- a/docs/group___p_i_o__get__local__array__size.html +++ b/docs/group___p_i_o__get__local__array__size.html @@ -94,7 +94,7 @@

    Parameters
    - +
    iodesc
    iodescIO descriptor structure. This structure defines the mapping for a given variable between compute and IO decomposition.
    @@ -104,7 +104,7 @@

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__get__var.html b/docs/group___p_i_o__get__var.html index 997aaca2be2..9873cdfe569 100644 --- a/docs/group___p_i_o__get__var.html +++ b/docs/group___p_i_o__get__var.html @@ -235,7 +235,7 @@

    Parameters
    - + @@ -292,8 +292,8 @@

    Parameters

    Filefile_desc_t
    Filefile_desc_t
    varid: The netcdf variable identifier
    index: a multidimensional index that specifies which value to get
    ival: The value for the netcdf metadata
    - - + +
    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    index: a multidimensional index that specifies which value to get
    ival: The value for the netcdf metadata
    @@ -343,7 +343,7 @@

    Parameters
    - +
    Filefile_desc_t
    Filefile_desc_t
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    @@ -393,8 +393,8 @@

    Parameters
    - - + +
    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    ival: The value for the netcdf metadata
    @@ -455,7 +455,7 @@

    Parameters
    - + @@ -519,7 +519,7 @@

    Parameters

    Filefile_desc_t
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    - + @@ -583,7 +583,7 @@

    Parameters

    Filefile_desc_t
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    - + @@ -647,7 +647,7 @@

    Parameters

    Filefile_desc_t
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    - + @@ -711,7 +711,7 @@

    Parameters

    Filefile_desc_t
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    - + @@ -775,7 +775,7 @@

    Parameters

    Filefile_desc_t
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    - + @@ -839,7 +839,7 @@

    Parameters

    Filefile_desc_t
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    - + @@ -903,7 +903,7 @@

    Parameters

    Filefile_desc_t
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    - + @@ -967,7 +967,7 @@

    Parameters

    Filefile_desc_t
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    - + @@ -1031,7 +1031,7 @@

    Parameters

    Filefile_desc_t
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    - + @@ -1095,7 +1095,7 @@

    Parameters

    Filefile_desc_t
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    - + @@ -1159,7 +1159,7 @@

    Parameters

    Filefile_desc_t
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    - + @@ -1223,7 +1223,7 @@

    Parameters

    Filefile_desc_t
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    - + @@ -1287,7 +1287,7 @@

    Parameters

    Filefile_desc_t
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    - + @@ -1351,7 +1351,7 @@

    Parameters

    Filefile_desc_t
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    - + @@ -1415,8 +1415,8 @@

    Parameters

    Filefile_desc_t
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    - - + + @@ -1479,8 +1479,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -1543,8 +1543,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -1607,8 +1607,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -1671,8 +1671,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -1735,8 +1735,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -1799,8 +1799,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -1863,8 +1863,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -1927,8 +1927,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -1991,8 +1991,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -2055,8 +2055,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -2119,8 +2119,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -2183,8 +2183,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -2247,8 +2247,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -2311,8 +2311,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -2375,8 +2375,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -2439,8 +2439,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -2503,8 +2503,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -2567,8 +2567,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -2631,8 +2631,8 @@

    Parameters

    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    - - + + @@ -2651,7 +2651,7 @@

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__getnumiotasks.html b/docs/group___p_i_o__getnumiotasks.html index d9b5c8ffbf8..398c8a4878c 100644 --- a/docs/group___p_i_o__getnumiotasks.html +++ b/docs/group___p_i_o__getnumiotasks.html @@ -120,7 +120,7 @@

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__init.html b/docs/group___p_i_o__init.html index 965d80fa578..2bdf9b165b6 100644 --- a/docs/group___p_i_o__init.html +++ b/docs/group___p_i_o__init.html @@ -78,6 +78,12 @@

    + + + + + +
    Filefile_desc_t
    vardescvar_desc_t
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    subroutine piolib_mod::init_intercom (component_count, peer_comm, comp_comms, io_comm, iosystem)
     Initialize the pio subsystem. More...
     
    int PIOc_Init_Intracomm (MPI_Comm comp_comm, int num_iotasks, int stride, int base, int rearr, int *iosysidp)
     Library initialization used when IO tasks are a subset of compute tasks. More...
     
    int PIOc_init_async (MPI_Comm world, int num_io_procs, int *io_proc_list, int component_count, int *num_procs_per_comp, int **proc_list, MPI_Comm *user_io_comm, MPI_Comm *user_comp_comm, int rearranger, int *iosysidp)
     Library initialization used when IO tasks are distinct from compute tasks. More...
     

    Detailed Description

    initializes the pio subsystem

    @@ -235,12 +241,208 @@

    +

    ◆ PIOc_init_async()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_init_async (MPI_Comm world,
    int num_io_procs,
    int * io_proc_list,
    int component_count,
    int * num_procs_per_comp,
    int ** proc_list,
    MPI_Comm * user_io_comm,
    MPI_Comm * user_comp_comm,
    int rearranger,
    int * iosysidp 
    )
    +
    + +

    Library initialization used when IO tasks are distinct from compute tasks.

    +

    This is a collective call. Input parameters are read on comp_rank=0 values on other tasks are ignored. This variation of PIO_init sets up a distinct set of tasks to handle IO, these tasks do not return from this call. Instead they go to an internal loop and wait to receive further instructions from the computational tasks.

    +

    Sequence of Events to do Asynch I/O

    +

    Here is the sequence of events that needs to occur when an IO operation is called from the collection of compute tasks. I'm going to use pio_put_var because write_darray has some special characteristics that make it a bit more complicated...

    +

    Compute tasks call pio_put_var with an integer argument

    +

    The MPI_Send sends a message from comp_rank=0 to io_rank=0 on union_comm (a comm defined as the union of io and compute tasks) msg is an integer which indicates the function being called, in this case the msg is PIO_MSG_PUT_VAR_INT

    +

    The iotasks now know what additional arguments they should expect to receive from the compute tasks, in this case a file handle, a variable id, the length of the array and the array itself.

    +

    The iotasks now have the information they need to complete the operation and they call the pio_put_var routine. (In pio1 this bit of code is in pio_get_put_callbacks.F90.in)

    +

    After the netcdf operation is completed (in the case of an inq or get operation) the result is communicated back to the compute tasks.

    +
    Parameters
    + + + + + + + + + + + +
    worldthe communicator containing all the available tasks.
    num_io_procsthe number of processes for the IO component.
    io_proc_listan array of lenth num_io_procs with the processor number for each IO processor. If NULL then the IO processes are assigned starting at processes 0.
    component_countnumber of computational components
    num_procs_per_compan array of int, of length component_count, with the number of processors in each computation component.
    proc_listan array of arrays containing the processor numbers for each computation component. If NULL then the computation components are assigned processors sequentially starting with processor num_io_procs.
    user_io_commpointer to an MPI_Comm. If not NULL, it will get an MPI duplicate of the IO communicator. (It is a full duplicate and later must be freed with MPI_Free() by the caller.)
    user_comp_commpointer to an array of pointers to MPI_Comm; the array is of length component_count. If not NULL, it will get an MPI duplicate of each computation communicator. (These are full duplicates and each must later be freed with MPI_Free() by the caller.)
    rearrangerthe default rearranger to use for decompositions in this IO system. Only PIO_REARR_BOX is supported for async. Support for PIO_REARR_SUBSET will be provided in a future version.
    iosysidppointer to array of length component_count that gets the iosysid for each component.
    +
    +
    +
    Returns
    PIO_NOERR on success, error code otherwise.
    +
    Author
    Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_Init_Intracomm()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_Init_Intracomm (MPI_Comm comp_comm,
    int num_iotasks,
    int stride,
    int base,
    int rearr,
    int * iosysidp 
    )
    +
    + +

    Library initialization used when IO tasks are a subset of compute tasks.

    +

    This function creates an MPI intracommunicator between a set of IO tasks and one or more sets of computational tasks.

    +

    The caller must create all comp_comm and the io_comm MPI communicators before calling this function.

    +

    Internally, this function does the following:

    +
      +
    • +Initialize logging system (if PIO_ENABLE_LOGGING is set).
      • +
    • +Allocates and initializes the iosystem_desc_t struct (ios).
      • +
    • +MPI duplicated user comp_comm to ios->comp_comm and ios->union_comm.
      • +
    • +Set ios->my_comm to be ios->comp_comm. (Not an MPI duplication.)
      • +
    • +Find MPI rank in comp_comm, determine ranks of IO tasks, determine whether this task is one of the IO tasks.
      • +
    • +Identify the root IO tasks.
      • +
    • +Create MPI groups for IO tasks, and for computation tasks.
      • +
    • +On IO tasks, create an IO communicator (ios->io_comm).
      • +
    • +Assign an iosystemid, and put this iosystem_desc_t into the list of open iosystems.
      • +
    • +Initialize the bget buffer, unless PIO_USE_MALLOC was used.
      • +
    +

    When complete, there are three MPI communicators (ios->comp_comm, ios->union_comm, and ios->io_comm) that must be freed by MPI.

    +
    Parameters
    + + + + + + + +
    comp_commthe MPI_Comm of the compute tasks.
    num_iotasksthe number of io tasks to use.
    stridethe offset between io tasks in the comp_comm.
    basethe comp_comm index of the first io task.
    rearrthe rearranger to use by default, this may be overriden in the PIO_init_decomp(). The rearranger is not used until the decomposition is initialized.
    iosysidpindex of the defined system descriptor.
    +
    +
    +
    Returns
    0 on success, otherwise a PIO error code.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__initdecomp.html b/docs/group___p_i_o__initdecomp.html index 2e88ea74272..2fb60139731 100644 --- a/docs/group___p_i_o__initdecomp.html +++ b/docs/group___p_i_o__initdecomp.html @@ -90,6 +90,15 @@ subroutine piolib_mod::pio_initdecomp_dof_i4 (iosystem, basepiotype, dims, compdof, iodesc, rearr, iostart, iocount)  Implements the decomp_dof for PIO_initdecomp (previous name: initdecomp_1dof_nf_box) More...
      +int PIOc_InitDecomp (int iosysid, int pio_type, int ndims, const int *gdimlen, int maplen, const PIO_Offset *compmap, int *ioidp, const int *rearranger, const PIO_Offset *iostart, const PIO_Offset *iocount) + Initialize the decomposition used with distributed arrays. More...
    +  +int PIOc_init_decomp (int iosysid, int pio_type, int ndims, const int *gdimlen, int maplen, const PIO_Offset *compmap, int *ioidp, int rearranger, const PIO_Offset *iostart, const PIO_Offset *iocount) + Initialize the decomposition used with distributed arrays. More...
    +  +int PIOc_InitDecomp_bc (int iosysid, int pio_type, int ndims, const int *gdimlen, const long int *start, const long int *count, int *ioidp) + This is a simplified initdecomp which can be used if the memory order of the data can be expressed in terms of start and count on the file. More...
    + 

    Detailed Description

    PIO_initdecomp is an overload interface the models decomposition to pio.

    @@ -506,7 +515,7 @@

    Parameters
    - + + + +
    iosystem
    iosystemIO system descriptor structure. This structure contains the general IO subsystem data and MPI structure
    basepiotypeThe type of variable(s) associated with this iodesc. The base types supported by PIO are:pio_nf::inq_attlen_id (ncid, varid, name, len)
     Gets the attribute length.
     
    int PIOc_inq_attlen (int ncid, int varid, const char *name, PIO_Offset *lenp)
     Get the length of an attribute. More...
     

    Detailed Description

    Function/Subroutine Documentation

    @@ -124,8 +127,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    name: name of attribute
    len: Length of attribute
    @@ -138,12 +141,65 @@

    +

    ◆ PIOc_inq_attlen()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_inq_attlen (int ncid,
    int varid,
    const char * name,
    PIO_Offset * lenp 
    )
    +
    + +

    Get the length of an attribute.

    +
    Parameters
    + + + + + +
    ncidthe ID of an open file.
    varidthe variable ID, or NC_GLOBAL for global attributes.
    namethe name of the attribute.
    lenpa pointer that gets the lenght of the attribute array. Ignored if NULL.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inq__attname.html b/docs/group___p_i_o__inq__attname.html index cb2d46d3842..f675fda3721 100644 --- a/docs/group___p_i_o__inq__attname.html +++ b/docs/group___p_i_o__inq__attname.html @@ -81,12 +81,69 @@ integer function pio_nf::inq_attname_id (ncid, varid, attnum, name)  Gets the name of an attribute.
      +int PIOc_inq_attname (int ncid, int varid, int attnum, char *name) + The PIO-C interface for the NetCDF function nc_inq_attname. More...
    + 

    Detailed Description

    +

    Function/Subroutine Documentation

    + +

    ◆ PIOc_inq_attname()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_inq_attname (int ncid,
    int varid,
    int attnum,
    char * name 
    )
    +
    + +

    The PIO-C interface for the NetCDF function nc_inq_attname.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm. For more information on the underlying NetCDF commmand please read about this function in the NetCDF documentation at: http://www.unidata.ucar.edu/software/netcdf/docs/group__attributes.html

    +
    Parameters
    + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    attnumthe attribute ID.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise. See PIOc_Set_File_Error_Handling
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inq__dimid.html b/docs/group___p_i_o__inq__dimid.html index 4600b511d72..c9f3c6db539 100644 --- a/docs/group___p_i_o__inq__dimid.html +++ b/docs/group___p_i_o__inq__dimid.html @@ -75,6 +75,9 @@ integer function pio_nf::inq_dimid_id (ncid, name, dimid)  Returns the netcdf dimension id for the name. More...
      +int PIOc_inq_dimid (int ncid, const char *name, int *idp) + The PIO-C interface for the NetCDF function nc_inq_dimid. More...
    + 

    Detailed Description

    Function/Subroutine Documentation

    @@ -113,7 +116,7 @@

    Parameters
    - +
    File
    FileFile descriptor structure. This structure holds information associated with each open file
    name: The name of the netcdf dimension.
    dimid: The netcdf dimension id.
    @@ -163,12 +166,58 @@

    +

    ◆ PIOc_inq_dimid()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_inq_dimid (int ncid,
    const char * name,
    int * idp 
    )
    +
    + +

    The PIO-C interface for the NetCDF function nc_inq_dimid.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm. For more information on the underlying NetCDF commmand please read about this function in the NetCDF documentation at: http://www.unidata.ucar.edu/software/netcdf/docs/group__dimensions.html

    +
    Parameters
    + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    idpa pointer that will get the id of the variable or attribute.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise. See PIOc_Set_File_Error_Handling
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inq__dimlen.html b/docs/group___p_i_o__inq__dimlen.html index 21df17ee80c..de94ba58da9 100644 --- a/docs/group___p_i_o__inq__dimlen.html +++ b/docs/group___p_i_o__inq__dimlen.html @@ -84,6 +84,9 @@ integer function pio_nf::inq_dimlen_id_long (ncid, dimid, len)  Get information about the length of a particular dimension in netcdf file.
      +int PIOc_inq_dimlen (int ncid, int dimid, PIO_Offset *lenp) + Find the length of a dimension. More...
    + 

    Detailed Description

    Function/Subroutine Documentation

    @@ -122,7 +125,7 @@

    Parameters
    - +
    File
    FileFile descriptor structure. This structure holds information associated with each open file
    dimid: The netcdf dimension ID.
    len: The length of the dimesion.
    @@ -135,12 +138,58 @@

    +

    ◆ PIOc_inq_dimlen()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_inq_dimlen (int ncid,
    int dimid,
    PIO_Offset * lenp 
    )
    +
    + +

    Find the length of a dimension.

    +
    Parameters
    + + + + +
    ncidthe ncid of an open file.
    dimidthe dimension ID.
    lenpa pointer that gets the length of the dimension. Igorned if NULL.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inq__dimname.html b/docs/group___p_i_o__inq__dimname.html index 674d7871d95..7749de69de3 100644 --- a/docs/group___p_i_o__inq__dimname.html +++ b/docs/group___p_i_o__inq__dimname.html @@ -75,6 +75,9 @@ integer function pio_nf::inq_dimname_id (ncid, dimid, name)  Get information about the name of of a dimension. More...
      +int PIOc_inq_dimname (int ncid, int dimid, char *name) + Find the name of a dimension. More...
    + 

    Detailed Description

    Function/Subroutine Documentation

    @@ -113,7 +116,7 @@

    Parameters
    - +
    File
    FileFile descriptor structure. This structure holds information associated with each open file
    dimid: The netcdf dimension ID.
    len: The length of the dimesion.
    @@ -162,12 +165,58 @@

    +

    ◆ PIOc_inq_dimname()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_inq_dimname (int ncid,
    int dimid,
    char * name 
    )
    +
    + +

    Find the name of a dimension.

    +
    Parameters
    + + + + +
    ncidthe ncid of an open file.
    dimidthe dimension ID.
    namea pointer that gets the name of the dimension. Igorned if NULL.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inq__natts.html b/docs/group___p_i_o__inq__natts.html index 748979daccc..9f5081638d4 100644 --- a/docs/group___p_i_o__inq__natts.html +++ b/docs/group___p_i_o__inq__natts.html @@ -75,6 +75,9 @@ integer function pio_nf::inq_natts_id (ncid, natts)  Get information about the number of global attributes in a file or group. More...
      +int PIOc_inq_natts (int ncid, int *ngattsp) + Find out how many global attributes are defined in a file. More...
    + 

    Detailed Description

    Function/Subroutine Documentation

    @@ -107,7 +110,7 @@

    Parameters
    - +
    File
    FileFile descriptor structure. This structure holds information associated with each open file
    natts: The number of attributes in the file.
    @@ -149,12 +152,51 @@

    +

    ◆ PIOc_inq_natts()

    + +
    +
    + + + + + + + + + + + + + + + + + + +
    int PIOc_inq_natts (int ncid,
    int * ngattsp 
    )
    +
    + +

    Find out how many global attributes are defined in a file.

    +
    Parameters
    + + + +
    ncidthe ncid of the open file.
    nattspa pointer that will get the number of attributes.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inq__ndims.html b/docs/group___p_i_o__inq__ndims.html index 91f9c8b5e34..d8d6c7db432 100644 --- a/docs/group___p_i_o__inq__ndims.html +++ b/docs/group___p_i_o__inq__ndims.html @@ -75,6 +75,9 @@ integer function pio_nf::inq_ndims_id (ncid, ndims)  Get information about the number of dimensions of a file or group. More...
      +int PIOc_inq_ndims (int ncid, int *ndimsp) + Find out how many dimensions are defined in the file. More...
    + 

    Detailed Description

    Function/Subroutine Documentation

    @@ -107,7 +110,7 @@

    Parameters
    - +
    File
    FileFile descriptor structure. This structure holds information associated with each open file
    ndims: The number of dimensions in the file.
    @@ -149,12 +152,51 @@

    +

    ◆ PIOc_inq_ndims()

    + +
    +
    + + + + + + + + + + + + + + + + + + +
    int PIOc_inq_ndims (int ncid,
    int * ndimsp 
    )
    +
    + +

    Find out how many dimensions are defined in the file.

    +
    Parameters
    + + + +
    ncidthe ncid of the open file.
    ndimspa pointer that will get the number of dimensions.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inq__nvars.html b/docs/group___p_i_o__inq__nvars.html index c73c938609f..25f61077353 100644 --- a/docs/group___p_i_o__inq__nvars.html +++ b/docs/group___p_i_o__inq__nvars.html @@ -75,6 +75,9 @@ integer function pio_nf::inq_nvars_id (ncid, nvars)  Get information about the number of variables in a file or group. More...
      +int PIOc_inq_nvars (int ncid, int *nvarsp) + Find out how many variables are defined in a file. More...
    + 

    Detailed Description

    Function/Subroutine Documentation

    @@ -107,7 +110,7 @@

    Parameters
    - +
    File
    FileFile descriptor structure. This structure holds information associated with each open file
    nvars: The number of variables in the file.
    @@ -149,12 +152,51 @@

    +

    ◆ PIOc_inq_nvars()

    + +
    +
    + + + + + + + + + + + + + + + + + + +
    int PIOc_inq_nvars (int ncid,
    int * nvarsp 
    )
    +
    + +

    Find out how many variables are defined in a file.

    +
    Parameters
    + + + +
    ncidthe ncid of the open file.
    nvarspa pointer that will get the number of variables.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inq__unlimdim.html b/docs/group___p_i_o__inq__unlimdim.html index 941f83a9f33..eb34a9fe699 100644 --- a/docs/group___p_i_o__inq__unlimdim.html +++ b/docs/group___p_i_o__inq__unlimdim.html @@ -60,14 +60,114 @@
    +
    +Functions/Subroutines
    PIO_inq_unlimdim
    + + + + + + + + +

    +Functions/Subroutines

    int PIOc_inq_unlimdim (int ncid, int *unlimdimidp)
     Find out the dimension ids of the unlimited dimension. More...
     
    int PIOc_inq_unlimdims (int ncid, int *nunlimdimsp, int *unlimdimidsp)
     Find out the dimension ids of all unlimited dimensions. More...
     
    +

    Detailed Description

    +

    Function/Subroutine Documentation

    + +

    ◆ PIOc_inq_unlimdim()

    + +
    +
    + + + + + + + + + + + + + + + + + + +
    int PIOc_inq_unlimdim (int ncid,
    int * unlimdimidp 
    )
    +
    + +

    Find out the dimension ids of the unlimited dimension.

    +
    Parameters
    + + + +
    ncidthe ncid of the open file.
    unlimdimidpa pointer that will the ID of the unlimited dimension, or -1 if there is no unlimited dimension.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_inq_unlimdims()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_inq_unlimdims (int ncid,
    int * nunlimdimsp,
    int * unlimdimidsp 
    )
    +
    + +

    Find out the dimension ids of all unlimited dimensions.

    +

    Note that only netCDF-4 files can have more than 1 unlimited dimension.

    +
    Parameters
    + + + + +
    ncidthe ncid of the open file.
    nunlimdimspa pointer that gets the number of unlimited dimensions. Ignored if NULL.
    unlimdimidspa pointer that will get an array of unlimited dimension IDs.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inq__var__deflate.html b/docs/group___p_i_o__inq__var__deflate.html index 6f5b6e121b4..02970941be6 100644 --- a/docs/group___p_i_o__inq__var__deflate.html +++ b/docs/group___p_i_o__inq__var__deflate.html @@ -128,8 +128,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    type: The type of variable
    @@ -242,7 +242,7 @@

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inq__vardimid.html b/docs/group___p_i_o__inq__vardimid.html index 0d7d2567683..a6ec16b3b05 100644 --- a/docs/group___p_i_o__inq__vardimid.html +++ b/docs/group___p_i_o__inq__vardimid.html @@ -80,6 +80,9 @@ integer function pio_nf::inq_vardimid_id (ncid, varid, dimids)  returns the dimids of the variable as an interger array
      +int PIOc_inq_vardimid (int ncid, int varid, int *dimidsp) + Find the dimension IDs associated with a variable. More...
    + 

    Detailed Description

    Function/Subroutine Documentation

    @@ -118,8 +121,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    dimids: The dimension identifier returned by PIO_def_dim
    @@ -131,12 +134,58 @@

    +

    ◆ PIOc_inq_vardimid()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_inq_vardimid (int ncid,
    int varid,
    int * dimidsp 
    )
    +
    + +

    Find the dimension IDs associated with a variable.

    +
    Parameters
    + + + + +
    ncidthe ncid of the open file.
    varidthe variable ID.
    dimidspa pointer that will get an array of dimids. Ignored if NULL.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inq__varid.html b/docs/group___p_i_o__inq__varid.html index 9299726a4a9..0fe2c37f5c6 100644 --- a/docs/group___p_i_o__inq__varid.html +++ b/docs/group___p_i_o__inq__varid.html @@ -80,6 +80,9 @@ integer function pio_nf::inq_varid_id (ncid, name, varid)  Returns the ID of a netcdf variable given its name.
      +int PIOc_inq_varid (int ncid, const char *name, int *varidp) + The PIO-C interface for the NetCDF function nc_inq_varid. More...
    + 

    Detailed Description

    Function/Subroutine Documentation

    @@ -118,9 +121,9 @@

    Parameters
    - + - +
    File
    FileFile descriptor structure. This structure holds information associated with each open file
    name: Name of the returned attribute
    vardesc
    vardescVariable description structure.
    @@ -131,12 +134,59 @@

    +

    ◆ PIOc_inq_varid()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_inq_varid (int ncid,
    const char * name,
    int * varidp 
    )
    +
    + +

    The PIO-C interface for the NetCDF function nc_inq_varid.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm. For more information on the underlying NetCDF commmand please read about this function in the NetCDF documentation at: http://www.unidata.ucar.edu/software/netcdf/docs/group__variables.html

    +
    Parameters
    + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    varidpa pointer that will get the variable id
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise. See PIOc_Set_File_Error_Handling
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inq__varname.html b/docs/group___p_i_o__inq__varname.html index 5e38df36d4e..df0dcd0f417 100644 --- a/docs/group___p_i_o__inq__varname.html +++ b/docs/group___p_i_o__inq__varname.html @@ -80,6 +80,9 @@ integer function pio_nf::inq_varname_id (ncid, varid, name)  Get the name associated with a variable.
      +int PIOc_inq_varname (int ncid, int varid, char *name) + Get the name of a variable. More...
    + 

    Detailed Description

    Function/Subroutine Documentation

    @@ -118,8 +121,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    name: The name of the netcdf variable.
    @@ -131,12 +134,58 @@

    +

    ◆ PIOc_inq_varname()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_inq_varname (int ncid,
    int varid,
    char * name 
    )
    +
    + +

    Get the name of a variable.

    +
    Parameters
    + + + + +
    ncidthe ncid of the open file.
    varidthe variable ID.
    namea pointer that will get the variable name.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inq__varnatts.html b/docs/group___p_i_o__inq__varnatts.html index e2c3922e640..ee65e1c751d 100644 --- a/docs/group___p_i_o__inq__varnatts.html +++ b/docs/group___p_i_o__inq__varnatts.html @@ -78,6 +78,9 @@ integer function pio_nf::inq_varnatts_id (ncid, varid, natts)  Gets metadata information for netcdf file. More...
      +int PIOc_inq_varnatts (int ncid, int varid, int *nattsp) + Find the number of attributes associated with a variable. More...
    + 

    Detailed Description

    Function/Subroutine Documentation

    @@ -116,8 +119,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    type: The type of variable
    @@ -201,12 +204,58 @@

    +

    ◆ PIOc_inq_varnatts()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_inq_varnatts (int ncid,
    int varid,
    int * nattsp 
    )
    +
    + +

    Find the number of attributes associated with a variable.

    +
    Parameters
    + + + + +
    ncidthe ncid of the open file.
    varidthe variable ID.
    nattspa pointer that will get the number of attriburtes. Ignored if NULL.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inq__varndims.html b/docs/group___p_i_o__inq__varndims.html index 3ad0e9f4ebc..00beb37a04b 100644 --- a/docs/group___p_i_o__inq__varndims.html +++ b/docs/group___p_i_o__inq__varndims.html @@ -80,6 +80,9 @@ integer function pio_nf::inq_varndims_id (ncid, varid, ndims)  Gets the number of dimension associated with a netcdf variable.
      +int PIOc_inq_varndims (int ncid, int varid, int *ndimsp) + Find the number of dimensions of a variable. More...
    + 

    Detailed Description

    Function/Subroutine Documentation

    @@ -118,8 +121,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ndims: The number of dimensions for the variable
    @@ -131,12 +134,58 @@

    +

    ◆ PIOc_inq_varndims()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_inq_varndims (int ncid,
    int varid,
    int * ndimsp 
    )
    +
    + +

    Find the number of dimensions of a variable.

    +
    Parameters
    + + + + +
    ncidthe ncid of the open file.
    varidthe variable ID.
    ndimspa pointer that will get the number of dimensions. Ignored if NULL.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inq__vartype.html b/docs/group___p_i_o__inq__vartype.html index e52b005a965..e4ed36c48dc 100644 --- a/docs/group___p_i_o__inq__vartype.html +++ b/docs/group___p_i_o__inq__vartype.html @@ -78,6 +78,9 @@ integer function pio_nf::inq_vartype_id (ncid, varid, type)  Gets metadata information for netcdf file. More...
      +int PIOc_inq_vartype (int ncid, int varid, nc_type *xtypep) + Find the type of a variable. More...
    + 

    Detailed Description

    Function/Subroutine Documentation

    @@ -116,8 +119,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    type: The type of variable
    @@ -201,12 +204,58 @@

    +

    ◆ PIOc_inq_vartype()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_inq_vartype (int ncid,
    int varid,
    nc_type * xtypep 
    )
    +
    + +

    Find the type of a variable.

    +
    Parameters
    + + + + +
    ncidthe ncid of the open file.
    varidthe variable ID.
    xtypepa pointer that will get the type of the attribute. Ignored if NULL.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inquire.html b/docs/group___p_i_o__inquire.html index c13cf6892dd..f38c0962ff1 100644 --- a/docs/group___p_i_o__inquire.html +++ b/docs/group___p_i_o__inquire.html @@ -125,7 +125,7 @@

    Parameters
    - + @@ -193,7 +193,7 @@

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inquire__dimension.html b/docs/group___p_i_o__inquire__dimension.html index ad82eeba458..2403aecc0a1 100644 --- a/docs/group___p_i_o__inquire__dimension.html +++ b/docs/group___p_i_o__inquire__dimension.html @@ -139,7 +139,7 @@

    -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__inquire__variable.html b/docs/group___p_i_o__inquire__variable.html index 09faffeb217..d71bb890a5b 100644 --- a/docs/group___p_i_o__inquire__variable.html +++ b/docs/group___p_i_o__inquire__variable.html @@ -143,7 +143,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    nDimensions: Number of dimensions defined for the netcdf file
    nVariables: Number of variables defined for the netcdf file
    nAttributes: Number of attributes defined for the netcdf file
    - + @@ -164,7 +164,7 @@

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__iotype.html b/docs/group___p_i_o__iotype.html index 8aa9eac3373..d3b88148445 100644 --- a/docs/group___p_i_o__iotype.html +++ b/docs/group___p_i_o__iotype.html @@ -77,7 +77,7 @@
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__kinds.html b/docs/group___p_i_o__kinds.html index 20abd0db714..97fc71526af 100644 --- a/docs/group___p_i_o__kinds.html +++ b/docs/group___p_i_o__kinds.html @@ -77,7 +77,7 @@
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__openfile.html b/docs/group___p_i_o__openfile.html index 05023620c6a..903be7ee9fc 100644 --- a/docs/group___p_i_o__openfile.html +++ b/docs/group___p_i_o__openfile.html @@ -72,9 +72,113 @@

    + + + + + + + + + + + + + + +
    ncid: A netcdf file descriptor returned by PIO_openfile or PIO_createfile.
    vardesc
    vardescVariable description structure.
    name: The name of the variable
    xtype: The type of the variable
    ndims: The number of dimensions for the variable.
    integer function, public piolib_mod::pio_openfile (iosystem, file, iotype, fname, mode)
     open an existing file using pio More...
     
    int PIOc_openfile (int iosysid, int *ncidp, int *iotype, const char *filename, int mode)
     Open an existing file using PIO library. More...
     
    int PIOc_openfile2 (int iosysid, int *ncidp, int *iotype, const char *filename, int mode)
     Open an existing file using PIO library. More...
     
    int PIOc_open (int iosysid, const char *path, int mode, int *ncidp)
     Open an existing file using PIO library. More...
     
    int inq_file_metadata (file_desc_t *file, int ncid, int iotype, int *nvars, int **rec_var, int **pio_type, int **pio_type_size, MPI_Datatype **mpi_type, int **mpi_type_size)
     Internal function used when opening an existing file. More...
     
    int PIOc_openfile_retry (int iosysid, int *ncidp, int *iotype, const char *filename, int mode, int retry)
     Open an existing file using PIO library. More...
     

    Detailed Description

    Function/Subroutine Documentation

    + +

    ◆ inq_file_metadata()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int inq_file_metadata (file_desc_t * file,
    int ncid,
    int iotype,
    int * nvars,
    int ** rec_var,
    int ** pio_type,
    int ** pio_type_size,
    MPI_Datatype ** mpi_type,
    int ** mpi_type_size 
    )
    +
    + +

    Internal function used when opening an existing file.

    +

    This function is called by PIOc_openfile_retry(). It learns some things about the metadata in that file. The results end up in the file_desc_t.

    +
    Parameters
    + + + + + + + + + + +
    filepointer to the file_desc_t for this file.
    ncidthe ncid assigned to the file when opened.
    iotypethe iotype used to open the file.
    nvarsa pointer that gets the number of vars in the file.
    rec_vargets an array (length nvars) of rec_var values for each var in the file. This array must be freed by caller.
    pio_typegets an array (length nvars) of pio_type values for each var in the file. This array must be freed by caller.
    pio_type_sizegets an array (length nvars) of the size of the PIO type for each var in the file. This array must be freed by caller.
    mpi_typegets an array (length nvars) of MPI type values for each var in the file. This array must be freed by caller.
    mpi_type_sizegets an array (length nvars) of the size of the MPI type for each var in the file. This array must be freed by caller.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Ed Hartnett
    + +
    +

    ◆ pio_openfile()

    @@ -137,12 +241,260 @@

    +

    ◆ PIOc_open()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_open (int iosysid,
    const char * path,
    int mode,
    int * ncidp 
    )
    +
    + +

    Open an existing file using PIO library.

    +

    Input parameters are read on comp task 0 and ignored elsewhere.

    +
    Parameters
    + + + + + +
    iosysidA defined pio system descriptor
    pathThe filename to open
    modeThe netcdf mode for the open operation
    ncidppointer to int where ncid will go
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_openfile()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_openfile (int iosysid,
    int * ncidp,
    int * iotype,
    const char * filename,
    int mode 
    )
    +
    + +

    Open an existing file using PIO library.

    +

    If the open fails, try again as netCDF serial before giving up. Input parameters are read on comp task 0 and ignored elsewhere.

    +

    Note that the file is opened with default fill mode, NOFILL for pnetcdf, and FILL for netCDF classic and netCDF-4 files.

    +
    Parameters
    + + + + + + +
    iosysid: A defined pio system descriptor (input)
    ncidp: A pio file descriptor (output)
    iotype: A pio output format (input)
    filename: The filename to open
    mode: The netcdf mode for the open operation
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_openfile2()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_openfile2 (int iosysid,
    int * ncidp,
    int * iotype,
    const char * filename,
    int mode 
    )
    +
    + +

    Open an existing file using PIO library.

    +

    This is like PIOc_openfile(), but if the open fails, this function will not try to open again as netCDF serial before giving up. Input parameters are read on comp task 0 and ignored elsewhere.

    +

    Note that the file is opened with default fill mode, NOFILL for pnetcdf, and FILL for netCDF classic and netCDF-4 files.

    +
    Parameters
    + + + + + + +
    iosysid: A defined pio system descriptor (input)
    ncidp: A pio file descriptor (output)
    iotype: A pio output format (input)
    filename: The filename to open
    mode: The netcdf mode for the open operation
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_openfile_retry()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_openfile_retry (int iosysid,
    int * ncidp,
    int * iotype,
    const char * filename,
    int mode,
    int retry 
    )
    +
    + +

    Open an existing file using PIO library.

    +

    This is an internal function. Depending on the value of the retry parameter, a failed open operation will be handled differently. If retry is non-zero, then a failed attempt to open a file with netCDF-4 (serial or parallel), or parallel-netcdf will be followed by an attempt to open the file as a serial classic netCDF file. This is an important feature to some NCAR users. The functionality is exposed to the user as PIOc_openfile() (which does the retry), and PIOc_open() (which does not do the retry).

    +

    Input parameters are read on comp task 0 and ignored elsewhere.

    +
    Parameters
    + + + + + + + +
    iosysidA defined pio system descriptor (input)
    ncidpA pio file descriptor (output)
    iotypeA pio output format (input)
    filenameThe filename to open
    modeThe netcdf mode for the open operation
    retrynon-zero to automatically retry with netCDF serial classic.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    +

    Return code from MPI function codes.

    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__put__att.html b/docs/group___p_i_o__put__att.html index fbe53ac509b..58bad145c97 100644 --- a/docs/group___p_i_o__put__att.html +++ b/docs/group___p_i_o__put__att.html @@ -93,10 +93,927 @@ integer function pionfatt_mod::put_att_1d_desc_double (File, varDesc, name, values)  Writes an netcdf attribute to a file. More...
      +int PIOc_put_att (int ncid, int varid, const char *name, nc_type xtype, PIO_Offset len, const void *op) + Write a netCDF attribute of any type. More...
    +  +int PIOc_put_att_schar (int ncid, int varid, const char *name, nc_type xtype, PIO_Offset len, const signed char *op) + Write a netCDF attribute array of 8-bit signed chars. More...
    +  +int PIOc_put_att_long (int ncid, int varid, const char *name, nc_type xtype, PIO_Offset len, const long *op) + Write a netCDF attribute array of 32-bit signed integers. More...
    +  +int PIOc_put_att_int (int ncid, int varid, const char *name, nc_type xtype, PIO_Offset len, const int *op) + Write a netCDF attribute array of 32-bit signed integers. More...
    +  +int PIOc_put_att_uchar (int ncid, int varid, const char *name, nc_type xtype, PIO_Offset len, const unsigned char *op) + Write a netCDF attribute array of 8-bit unsigned chars. More...
    +  +int PIOc_put_att_longlong (int ncid, int varid, const char *name, nc_type xtype, PIO_Offset len, const long long *op) + Write a netCDF attribute array of 64-bit signed integers. More...
    +  +int PIOc_put_att_uint (int ncid, int varid, const char *name, nc_type xtype, PIO_Offset len, const unsigned int *op) + Write a netCDF attribute array of 32-bit unsigned integers. More...
    +  +int PIOc_put_att_float (int ncid, int varid, const char *name, nc_type xtype, PIO_Offset len, const float *op) + Write a netCDF attribute array of 32-bit floating points. More...
    +  +int PIOc_put_att_ulonglong (int ncid, int varid, const char *name, nc_type xtype, PIO_Offset len, const unsigned long long *op) + Write a netCDF attribute array of 64-bit unsigned integers. More...
    +  +int PIOc_put_att_ushort (int ncid, int varid, const char *name, nc_type xtype, PIO_Offset len, const unsigned short *op) + Write a netCDF attribute array of 16-bit unsigned integers. More...
    +  +int PIOc_put_att_text (int ncid, int varid, const char *name, PIO_Offset len, const char *op) + Write a netCDF text attribute. More...
    +  +int PIOc_put_att_short (int ncid, int varid, const char *name, nc_type xtype, PIO_Offset len, const short *op) + Write a netCDF attribute array of 16-bit integers. More...
    +  +int PIOc_put_att_double (int ncid, int varid, const char *name, nc_type xtype, PIO_Offset len, const double *op) + Write a netCDF attribute array of 64-bit floating points. More...
    + 

    Detailed Description

    Writes an netcdf attribute to a file.

    Function/Subroutine Documentation

    + +

    ◆ PIOc_put_att()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_put_att (int ncid,
    int varid,
    const char * name,
    nc_type xtype,
    PIO_Offset len,
    const void * op 
    )
    +
    + +

    Write a netCDF attribute of any type.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute.
    xtypethe nc_type of the attribute.
    lenthe length of the attribute array.
    opa pointer with the attribute data.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_put_att_double()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_put_att_double (int ncid,
    int varid,
    const char * name,
    nc_type xtype,
    PIO_Offset len,
    const double * op 
    )
    +
    + +

    Write a netCDF attribute array of 64-bit floating points.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute.
    xtypethe nc_type of the attribute.
    lenthe length of the attribute array.
    opa pointer with the attribute data.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_put_att_float()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_put_att_float (int ncid,
    int varid,
    const char * name,
    nc_type xtype,
    PIO_Offset len,
    const float * op 
    )
    +
    + +

    Write a netCDF attribute array of 32-bit floating points.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute.
    xtypethe nc_type of the attribute.
    lenthe length of the attribute array.
    opa pointer with the attribute data.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_put_att_int()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_put_att_int (int ncid,
    int varid,
    const char * name,
    nc_type xtype,
    PIO_Offset len,
    const int * op 
    )
    +
    + +

    Write a netCDF attribute array of 32-bit signed integers.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute.
    xtypethe nc_type of the attribute.
    lenthe length of the attribute array.
    opa pointer with the attribute data.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_put_att_long()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_put_att_long (int ncid,
    int varid,
    const char * name,
    nc_type xtype,
    PIO_Offset len,
    const long * op 
    )
    +
    + +

    Write a netCDF attribute array of 32-bit signed integers.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute.
    xtypethe nc_type of the attribute.
    lenthe length of the attribute array.
    opa pointer with the attribute data.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_put_att_longlong()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_put_att_longlong (int ncid,
    int varid,
    const char * name,
    nc_type xtype,
    PIO_Offset len,
    const long long * op 
    )
    +
    + +

    Write a netCDF attribute array of 64-bit signed integers.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute.
    xtypethe nc_type of the attribute.
    lenthe length of the attribute array.
    opa pointer with the attribute data.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_put_att_schar()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_put_att_schar (int ncid,
    int varid,
    const char * name,
    nc_type xtype,
    PIO_Offset len,
    const signed char * op 
    )
    +
    + +

    Write a netCDF attribute array of 8-bit signed chars.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute.
    xtypethe nc_type of the attribute.
    lenthe length of the attribute array.
    opa pointer with the attribute data.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_put_att_short()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_put_att_short (int ncid,
    int varid,
    const char * name,
    nc_type xtype,
    PIO_Offset len,
    const short * op 
    )
    +
    + +

    Write a netCDF attribute array of 16-bit integers.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute.
    xtypethe nc_type of the attribute.
    lenthe length of the attribute array.
    opa pointer with the attribute data.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_put_att_text()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_put_att_text (int ncid,
    int varid,
    const char * name,
    PIO_Offset len,
    const char * op 
    )
    +
    + +

    Write a netCDF text attribute.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute.
    xtypethe nc_type of the attribute.
    lenthe length of the attribute array.
    opa pointer with the attribute data.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_put_att_uchar()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_put_att_uchar (int ncid,
    int varid,
    const char * name,
    nc_type xtype,
    PIO_Offset len,
    const unsigned char * op 
    )
    +
    + +

    Write a netCDF attribute array of 8-bit unsigned chars.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute.
    xtypethe nc_type of the attribute.
    lenthe length of the attribute array.
    opa pointer with the attribute data.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_put_att_uint()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_put_att_uint (int ncid,
    int varid,
    const char * name,
    nc_type xtype,
    PIO_Offset len,
    const unsigned int * op 
    )
    +
    + +

    Write a netCDF attribute array of 32-bit unsigned integers.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute.
    xtypethe nc_type of the attribute.
    lenthe length of the attribute array.
    opa pointer with the attribute data.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_put_att_ulonglong()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_put_att_ulonglong (int ncid,
    int varid,
    const char * name,
    nc_type xtype,
    PIO_Offset len,
    const unsigned long long * op 
    )
    +
    + +

    Write a netCDF attribute array of 64-bit unsigned integers.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute.
    xtypethe nc_type of the attribute.
    lenthe length of the attribute array.
    opa pointer with the attribute data.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_put_att_ushort()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_put_att_ushort (int ncid,
    int varid,
    const char * name,
    nc_type xtype,
    PIO_Offset len,
    const unsigned short * op 
    )
    +
    + +

    Write a netCDF attribute array of 16-bit unsigned integers.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm.

    +
    Parameters
    + + + + + + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    varidthe variable ID.
    namethe name of the attribute.
    xtypethe nc_type of the attribute.
    lenthe length of the attribute array.
    opa pointer with the attribute data.
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +

    ◆ put_att_1d_desc_double()

    @@ -138,8 +1055,8 @@

    Parameters
    - - + +
    File
    varDesc
    FileFile descriptor structure. This structure holds information associated with each open file
    varDescVariable description structure.
    name: name of the attribute to add
    var: The value for the netcdf attribute
    @@ -195,8 +1112,8 @@

    Parameters
    - - + +
    File
    varDesc
    FileFile descriptor structure. This structure holds information associated with each open file
    varDescVariable description structure.
    name: name of the attribute to add
    var: The value for the netcdf attribute
    @@ -252,8 +1169,8 @@

    Parameters
    - - + +
    File
    varDesc
    FileFile descriptor structure. This structure holds information associated with each open file
    varDescVariable description structure.
    name: name of the attribute to add
    var: The value for the netcdf attribute
    @@ -309,7 +1226,7 @@

    Parameters
    - + @@ -366,7 +1283,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    name: name of the attribute to add
    values: The value for the netcdf attribute
    - + @@ -423,7 +1340,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    name: name of the attribute to add
    values: The value for the netcdf attribute
    - + @@ -480,7 +1397,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    name: name of the attribute to add
    values: The value for the netcdf attribute
    - + @@ -499,7 +1416,7 @@

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__put__var.html b/docs/group___p_i_o__put__var.html index e33b3971ece..ff8970b5f0e 100644 --- a/docs/group___p_i_o__put__var.html +++ b/docs/group___p_i_o__put__var.html @@ -406,7 +406,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    name: name of the attribute to add
    var: The value for the netcdf attribute
    - + @@ -463,7 +463,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    index:
    ival: The value for the netcdf metadata
    - + @@ -520,7 +520,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    index:
    ival: The value for the netcdf metadata
    - + @@ -577,7 +577,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    index:
    ival: The value for the netcdf metadata
    - + @@ -634,8 +634,8 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    index:
    ival: The value for the netcdf metadata
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    ival: The value for the netcdf metadata
    @@ -685,7 +685,7 @@

    Parameters
    - + @@ -736,7 +736,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -787,7 +787,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -838,7 +838,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -889,7 +889,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf variable
    - + @@ -940,7 +940,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -991,7 +991,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1042,7 +1042,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1093,7 +1093,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1144,7 +1144,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1195,7 +1195,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1246,7 +1246,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1297,7 +1297,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1348,7 +1348,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1399,7 +1399,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1450,7 +1450,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1501,7 +1501,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1552,7 +1552,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1603,7 +1603,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1654,7 +1654,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1705,7 +1705,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1756,7 +1756,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1807,7 +1807,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1858,7 +1858,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1909,7 +1909,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    - + @@ -1960,7 +1960,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The data to write.
    - + @@ -2011,7 +2011,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The data to write.
    - + @@ -2062,8 +2062,8 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The data to write.
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2112,8 +2112,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2162,8 +2162,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2212,8 +2212,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2262,8 +2262,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2312,8 +2312,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2362,8 +2362,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2412,8 +2412,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2462,8 +2462,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2512,8 +2512,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2562,8 +2562,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2612,8 +2612,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2662,8 +2662,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2712,8 +2712,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2762,8 +2762,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2812,8 +2812,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2862,8 +2862,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2912,8 +2912,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -2962,8 +2962,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -3012,8 +3012,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -3062,8 +3062,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -3112,8 +3112,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -3162,8 +3162,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -3212,8 +3212,8 @@

    Parameters
    - - + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    @@ -3274,7 +3274,7 @@

    Parameters
    - + @@ -3338,7 +3338,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -3402,7 +3402,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -3466,7 +3466,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -3530,7 +3530,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -3594,7 +3594,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -3658,7 +3658,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -3722,7 +3722,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -3786,7 +3786,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -3850,7 +3850,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -3914,7 +3914,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -3978,7 +3978,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -4042,7 +4042,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -4106,7 +4106,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -4170,7 +4170,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -4234,7 +4234,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -4298,7 +4298,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -4362,7 +4362,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -4426,7 +4426,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -4490,7 +4490,7 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - + @@ -4554,8 +4554,8 @@

    Parameters

    File
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    - - + + @@ -4618,8 +4618,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -4682,8 +4682,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -4746,8 +4746,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -4810,8 +4810,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -4874,8 +4874,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -4938,8 +4938,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -5002,8 +5002,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -5066,8 +5066,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -5130,8 +5130,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -5194,8 +5194,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -5258,8 +5258,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -5322,8 +5322,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -5386,8 +5386,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -5450,8 +5450,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -5514,8 +5514,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -5578,8 +5578,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -5642,8 +5642,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -5706,8 +5706,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -5770,8 +5770,8 @@

    Parameters

    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    - - + + @@ -5790,7 +5790,7 @@

    -Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__read__darray.html b/docs/group___p_i_o__read__darray.html index d87409ba442..33f75d322d5 100644 --- a/docs/group___p_i_o__read__darray.html +++ b/docs/group___p_i_o__read__darray.html @@ -135,10 +135,264 @@

    + + + + + + + + + + + +
    File
    vardesc
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    subroutine piodarray::read_darray_7d_double (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type double from a netCDF variable of 7 dimension(s). More...
     
    int PIOc_read_darray (int ncid, int varid, int ioid, PIO_Offset arraylen, void *array)
     Read a field from a file to the IO library. More...
     
    int find_all_start_count (io_region *region, int maxregions, int fndims, int iodesc_ndims, var_desc_t *vdesc, size_t *tmp_start, size_t *tmp_count)
     Fill the tmp_start and tmp_count arrays, which contain the start and count arrays for all regions. More...
     
    int pio_read_darray_nc (file_desc_t *file, io_desc_t *iodesc, int vid, void *iobuf)
     Read an array of data from a file to the (parallel) IO library. More...
     
    int pio_read_darray_nc_serial (file_desc_t *file, io_desc_t *iodesc, int vid, void *iobuf)
     Read an array of data from a file to the (serial) IO library. More...
     

    Detailed Description

    The overloaded PIO_read_darray function reads a distributed array from disk.

    Function/Subroutine Documentation

    + +

    ◆ find_all_start_count()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int find_all_start_count (io_region * region,
    int maxregions,
    int fndims,
    int iodesc_ndims,
    var_desc_t * vdesc,
    size_t * tmp_start,
    size_t * tmp_count 
    )
    +
    + +

    Fill the tmp_start and tmp_count arrays, which contain the start and count arrays for all regions.

    +

    This is an internal function which is only called on io tasks. It is called by write_darray_multi_serial().

    +
    Parameters
    + + + + + + + + +
    regionpointer to the first in a linked list of regions.
    maxregionsthe number of regions in the list.
    fndimsthe number of dimensions in the file.
    iodesc_ndimsthe number of dimensions in the decomposition.
    vdescpointer to an array of var_desc_t for the vars being written.
    tmp_startpointer to an already allocaed array of length fndims * maxregions. This array will get the start values for all regions.
    tmp_countpointer to an already allocaed array of length fndims * maxregions. This array will get the count values for all regions.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ pio_read_darray_nc()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int pio_read_darray_nc (file_desc_t * file,
    io_desc_t * iodesc,
    int vid,
    void * iobuf 
    )
    +
    + +

    Read an array of data from a file to the (parallel) IO library.

    +
    Parameters
    + + + + + +
    filea pointer to the open file descriptor for the file that will be written to
    iodesca pointer to the defined iodescriptor for the buffer
    vidthe variable id to be read
    iobufthe buffer to be read into from this mpi task. May be null. for example we have 8 ionodes and a distributed array with global size 4, then at least 4 nodes will have a null iobuf. In practice the box rearranger trys to have at least blocksize bytes on each io task and so if the total number of bytes to write is less than blocksize*numiotasks then some iotasks will have a NULL iobuf.
    +
    +
    +
    Returns
    0 on success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ pio_read_darray_nc_serial()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int pio_read_darray_nc_serial (file_desc_t * file,
    io_desc_t * iodesc,
    int vid,
    void * iobuf 
    )
    +
    + +

    Read an array of data from a file to the (serial) IO library.

    +

    This function is only used with netCDF classic and netCDF-4 serial iotypes.

    +
    Parameters
    + + + + + +
    filea pointer to the open file descriptor for the file that will be written to
    iodesca pointer to the defined iodescriptor for the buffer
    vidthe variable id to be read.
    iobufthe buffer to be written from this mpi task. May be null. for example we have 8 ionodes and a distributed array with global size 4, then at least 4 nodes will have a null iobuf. In practice the box rearranger trys to have at least blocksize bytes on each io task and so if the total number of bytes to write is less than blocksize * numiotasks then some iotasks will have a NULL iobuf.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_read_darray()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_read_darray (int ncid,
    int varid,
    int ioid,
    PIO_Offset arraylen,
    void * array 
    )
    +
    + +

    Read a field from a file to the IO library.

    +
    Parameters
    + + + + + + +
    ncididentifies the netCDF file
    varidthe variable ID to be read
    ioidthe I/O description ID as passed back by PIOc_InitDecomp().
    arraylenthe length of the array to be read. This is the length of the distrubited array. That is, the length of the portion of the data that is on the processor.
    arraypointer to the data to be read. This is a pointer to the distributed portion of the array that is on this processor.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +

    ◆ read_darray_1d_double()

    @@ -186,9 +440,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -244,9 +498,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -302,9 +556,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -360,9 +614,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -418,9 +672,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -476,9 +730,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -534,9 +788,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -592,9 +846,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -650,9 +904,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -708,9 +962,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -766,9 +1020,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -824,9 +1078,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -882,9 +1136,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -940,9 +1194,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -998,9 +1252,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -1056,9 +1310,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -1114,9 +1368,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -1172,9 +1426,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -1230,9 +1484,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -1288,9 +1542,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -1346,9 +1600,9 @@

    Parameters
    - - - + + +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    @@ -1360,7 +1614,7 @@

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__rearr__comm__dir.html b/docs/group___p_i_o__rearr__comm__dir.html index c5c0d196987..2f4d77ac10b 100644 --- a/docs/group___p_i_o__rearr__comm__dir.html +++ b/docs/group___p_i_o__rearr__comm__dir.html @@ -77,7 +77,7 @@
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__rearr__comm__fc__options.html b/docs/group___p_i_o__rearr__comm__fc__options.html index ba35ba36476..768bb57419a 100644 --- a/docs/group___p_i_o__rearr__comm__fc__options.html +++ b/docs/group___p_i_o__rearr__comm__fc__options.html @@ -76,7 +76,7 @@
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__rearr__comm__t.html b/docs/group___p_i_o__rearr__comm__t.html index fd93abe4ebd..8428aeac266 100644 --- a/docs/group___p_i_o__rearr__comm__t.html +++ b/docs/group___p_i_o__rearr__comm__t.html @@ -75,7 +75,7 @@
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__rearr__method.html b/docs/group___p_i_o__rearr__method.html index 0306297aed6..92de9319fe9 100644 --- a/docs/group___p_i_o__rearr__method.html +++ b/docs/group___p_i_o__rearr__method.html @@ -76,7 +76,7 @@
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__rearr__options.html b/docs/group___p_i_o__rearr__options.html index 18b6f5710fc..3aa84552529 100644 --- a/docs/group___p_i_o__rearr__options.html +++ b/docs/group___p_i_o__rearr__options.html @@ -85,7 +85,7 @@
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__redef.html b/docs/group___p_i_o__redef.html index 0ba9549c37a..5e3b9aae420 100644 --- a/docs/group___p_i_o__redef.html +++ b/docs/group___p_i_o__redef.html @@ -73,11 +73,43 @@  Exits netcdf define mode. More...
      integer function pio_nf::redef_id (ncid) - Wrapper for the C function PIOc_redef . More...
    + Wrapper for the C function PIOc_redef . More...
      +int PIOc_redef (int ncid) + The PIO-C interface for the NetCDF function nc_redef. More...
    + 

    Detailed Description

    Function/Subroutine Documentation

    + +

    ◆ PIOc_redef()

    + +
    +
    + + + + + + + + +
    int PIOc_redef (int ncid)
    +
    + +

    The PIO-C interface for the NetCDF function nc_redef.

    +

    This routine is called collectively by all tasks in the communicator ios.union_comm. For more information on the underlying NetCDF commmand please read about this function in the NetCDF documentation at: http://www.unidata.ucar.edu/software/netcdf/docs/group__datasets.html

    +
    Parameters
    + + +
    ncidthe ncid of the open file, obtained from PIOc_openfile() or PIOc_createfile().
    +
    +
    +
    Returns
    PIO_NOERR for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +

    ◆ redef_desc()

    @@ -97,7 +129,7 @@

    Parameters
    - +
    File
    FileFile descriptor structure. This structure holds information associated with each open file
    @@ -126,14 +158,14 @@

    -

    Wrapper for the C function PIOc_redef .

    +

    Wrapper for the C function PIOc_redef .

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__set__blocksize.html b/docs/group___p_i_o__set__blocksize.html index 1da5939369b..1091a48a5ea 100644 --- a/docs/group___p_i_o__set__blocksize.html +++ b/docs/group___p_i_o__set__blocksize.html @@ -70,15 +70,47 @@

    Functions/Subroutines

    -subroutine pio::pio_set_blocksize (blocksize) +subroutine pio::pio_set_blocksize (blocksize)  Set the target blocksize for the box rearranger.
      +int PIOc_set_blocksize (int newblocksize) + Set the target blocksize for the box rearranger. More...
    + 

    Detailed Description

    +

    Function/Subroutine Documentation

    + +

    ◆ PIOc_set_blocksize()

    + +
    +
    + + + + + + + + +
    int PIOc_set_blocksize (int newblocksize)
    +
    + +

    Set the target blocksize for the box rearranger.

    +
    Parameters
    + + +
    newblocksizethe new blocksize.
    +
    +
    +
    Returns
    0 for success.
    +
    Author
    Jim Edwards
    + +
    +
    -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__set__hint.html b/docs/group___p_i_o__set__hint.html index 546d79b0a50..15268f92bd8 100644 --- a/docs/group___p_i_o__set__hint.html +++ b/docs/group___p_i_o__set__hint.html @@ -70,7 +70,7 @@

    set file system hints using mpi_info_set

    This is a collective call which expects the following parameters:

    Parameters
    - +
    iosystem
    iosystemIO descriptor structure. This structure defines the mapping for a given variable between compute and IO decomposition.
    hintthe string name of the hint to define
    hintvalthe string value to set the hint to
    @@ -85,7 +85,7 @@
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__set__log__level.html b/docs/group___p_i_o__set__log__level.html index a64370f000f..4276a52b8ca 100644 --- a/docs/group___p_i_o__set__log__level.html +++ b/docs/group___p_i_o__set__log__level.html @@ -68,7 +68,7 @@
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__setdebuglevel.html b/docs/group___p_i_o__setdebuglevel.html index f835592f018..fbc5a7cc989 100644 --- a/docs/group___p_i_o__setdebuglevel.html +++ b/docs/group___p_i_o__setdebuglevel.html @@ -108,7 +108,7 @@

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__seterrorhandling.html b/docs/group___p_i_o__seterrorhandling.html index 18c6b2b2a5f..b2efce9c77f 100644 --- a/docs/group___p_i_o__seterrorhandling.html +++ b/docs/group___p_i_o__seterrorhandling.html @@ -129,7 +129,7 @@

    Parameters
    - +
    file
    fileFile descriptor structure. This structure holds information associated with each open file
    method:
    @@ -244,7 +244,7 @@

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__setframe.html b/docs/group___p_i_o__setframe.html index 2f1c2e6bf02..87b286355cf 100644 --- a/docs/group___p_i_o__setframe.html +++ b/docs/group___p_i_o__setframe.html @@ -75,10 +75,59 @@ subroutine piolib_mod::setframe (file, vardesc, frame)  sets the record dimension of a variable in a netcdf format file or the block address in a binary file More...
      +int PIOc_setframe (int ncid, int varid, int frame) + Set the unlimited dimension of the given variable. More...
    + 

    Detailed Description

    sets the unlimited dimension for netcdf file

    Function/Subroutine Documentation

    + +

    ◆ PIOc_setframe()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_setframe (int ncid,
    int varid,
    int frame 
    )
    +
    + +

    Set the unlimited dimension of the given variable.

    +
    Parameters
    + + + + +
    ncidthe ncid of the file.
    varidthe varid of the variable
    framethe value of the unlimited dimension. In c 0 for the first record, 1 for the second
    +
    +
    +
    Returns
    PIO_NOERR for no error, or error code.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +

    ◆ setframe()

    @@ -114,7 +163,7 @@

    Parameters
    - +
    vardesc
    vardescVariable description structure.
    frame: frame number to set
    @@ -125,7 +174,7 @@

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__strerror.html b/docs/group___p_i_o__strerror.html index 9a8a9456e7d..15e96c626b8 100644 --- a/docs/group___p_i_o__strerror.html +++ b/docs/group___p_i_o__strerror.html @@ -68,7 +68,7 @@
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__syncfile.html b/docs/group___p_i_o__syncfile.html index db9e7bdf964..8f8ec955186 100644 --- a/docs/group___p_i_o__syncfile.html +++ b/docs/group___p_i_o__syncfile.html @@ -94,7 +94,7 @@

    Parameters
    - +
    file
    fileFile descriptor structure. This structure holds information associated with each open file

    @@ -104,7 +104,7 @@

    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group___p_i_o__write__darray.html b/docs/group___p_i_o__write__darray.html index 747b62e6275..c22a586131c 100644 --- a/docs/group___p_i_o__write__darray.html +++ b/docs/group___p_i_o__write__darray.html @@ -135,10 +135,698 @@ subroutine piodarray::write_darray_7d_double (File, varDesc, ioDesc, array, iostat, fillval)  Writes a 7D array of type double. More...
      +int PIOc_write_darray_multi (int ncid, const int *varids, int ioid, int nvars, PIO_Offset arraylen, void *array, const int *frame, void **fillvalue, bool flushtodisk) + Write one or more arrays with the same IO decomposition to the file. More...
    +  +int find_var_fillvalue (file_desc_t *file, int varid, var_desc_t *vdesc) + Find the fillvalue that should be used for a variable. More...
    +  +int PIOc_write_darray (int ncid, int varid, int ioid, PIO_Offset arraylen, void *array, void *fillvalue) + Write a distributed array to the output file. More...
    +  +int find_start_count (int ndims, int fndims, var_desc_t *vdesc, io_region *region, const int *frame, size_t *start, size_t *count) + Fill start/count arrays for write_darray_multi_par(). More...
    +  +int write_darray_multi_par (file_desc_t *file, int nvars, int fndims, const int *varids, io_desc_t *iodesc, int fill, const int *frame) + Write a set of one or more aggregated arrays to output file. More...
    +  +int send_all_start_count (iosystem_desc_t *ios, io_desc_t *iodesc, PIO_Offset llen, int maxregions, int nvars, int fndims, size_t *tmp_start, size_t *tmp_count, void *iobuf) + Internal function called by IO tasks other than IO task 0 to send their tmp_start/tmp_count arrays to IO task 0. More...
    +  +int recv_and_write_data (file_desc_t *file, const int *varids, const int *frame, io_desc_t *iodesc, PIO_Offset llen, int maxregions, int nvars, int fndims, size_t *tmp_start, size_t *tmp_count, void *iobuf) + This is an internal function that is run only on IO proc 0. More...
    +  +int write_darray_multi_serial (file_desc_t *file, int nvars, int fndims, const int *varids, io_desc_t *iodesc, int fill, const int *frame) + Write a set of one or more aggregated arrays to output file in serial mode. More...
    +  +int flush_output_buffer (file_desc_t *file, bool force, PIO_Offset addsize) + Flush the output buffer. More...
    +  +void cn_buffer_report (iosystem_desc_t *ios, bool collective) + Print out info about the buffer for debug purposes. More...
    +  +void free_cn_buffer_pool (iosystem_desc_t *ios) + Free the buffer pool. More...
    +  +int flush_buffer (int ncid, wmulti_buffer *wmb, bool flushtodisk) + Flush the buffer. More...
    + 

    Detailed Description

    The overloaded PIO_write_darray writes a distributed array to disk.

    Function/Subroutine Documentation

    + +

    ◆ cn_buffer_report()

    + +
    +
    + + + + + + + + + + + + + + + + + + +
    void cn_buffer_report (iosystem_desc_t * ios,
    bool collective 
    )
    +
    + +

    Print out info about the buffer for debug purposes.

    +

    This should only be called when logging is enabled.

    +
    Parameters
    + + + +
    iospointer to the IO system structure
    collectivetrue if collective report is desired
    +
    +
    +
    Author
    Jim Edwards
    + +
    +
    + +

    ◆ find_start_count()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int find_start_count (int ndims,
    int fndims,
    var_desc_t * vdesc,
    io_region * region,
    const int * frame,
    size_t * start,
    size_t * count 
    )
    +
    + +

    Fill start/count arrays for write_darray_multi_par().

    +

    This is an internal function.

    +
    Parameters
    + + + + + + + + +
    ndimsthe number of dims in the decomposition.
    fndimsthe number of dims in the file.
    vdescpointer to the var_desc_t info.
    regionpointer to a region.
    framearray of record values.
    startan already-allocated array which gets the start values.
    countan already-allocated array which gets the count values.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Ed Hartnett
    + +
    +
    + +

    ◆ find_var_fillvalue()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    int find_var_fillvalue (file_desc_t * file,
    int varid,
    var_desc_t * vdesc 
    )
    +
    + +

    Find the fillvalue that should be used for a variable.

    +
    Parameters
    + + + + +
    fileInfo about file we are writing to.
    varidthe variable ID.
    vdescpointer to var_desc_t info for this var.
    +
    +
    +
    Returns
    0 for success, non-zero error code for failure.
    +
    Author
    Ed Hartnett
    + +
    +
    + +

    ◆ flush_buffer()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    int flush_buffer (int ncid,
    wmulti_buffer * wmb,
    bool flushtodisk 
    )
    +
    + +

    Flush the buffer.

    +
    Parameters
    + + + + +
    ncididentifies the netCDF file.
    wmbpointer to the wmulti_buffer structure.
    flushtodiskif true, then flush data to disk.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ flush_output_buffer()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    int flush_output_buffer (file_desc_t * file,
    bool force,
    PIO_Offset addsize 
    )
    +
    + +

    Flush the output buffer.

    +

    This is only relevant for files opened with pnetcdf.

    +
    Parameters
    + + + + +
    filea pointer to the open file descriptor for the file that will be written to
    forcetrue to force the flushing of the buffer
    addsizeadditional size to add to buffer (in bytes)
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ free_cn_buffer_pool()

    + +
    +
    + + + + + + + + +
    void free_cn_buffer_pool (iosystem_desc_t * ios)
    +
    + +

    Free the buffer pool.

    +

    If malloc is used (that is, PIO_USE_MALLOC is non zero), this function does nothing.

    +
    Parameters
    + + +
    iospointer to the IO system structure.
    +
    +
    +
    Author
    Jim Edwards
    + +
    +
    + +

    ◆ PIOc_write_darray()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_write_darray (int ncid,
    int varid,
    int ioid,
    PIO_Offset arraylen,
    void * array,
    void * fillvalue 
    )
    +
    + +

    Write a distributed array to the output file.

    +

    This routine aggregates output on the compute nodes and only sends it to the IO nodes when the compute buffer is full or when a flush is triggered.

    +

    Internally, this function will:

      +
    • +Locate info about this file, decomposition, and variable.
      • +
    • +If we don't have a fillvalue for this variable, determine one and remember it for future calls.
      • +
    • +Initialize or find the multi_buffer for this record/var.
      • +
    • +Find out how much free space is available in the multi buffer and flush if needed.
      • +
    • +Store the new user data in the mutli buffer.
      • +
    • +If needed (only for subset rearranger), fill in gaps in data with fillvalue.
      • +
    • +Remember the frame value (i.e. record number) of this data if there is one.
      • +
    +

    NOTE: The write multi buffer wmulti_buffer is the cache on compute nodes that will collect and store multiple variables before sending them to the io nodes. Aggregating variables in this way leads to a considerable savings in communication expense. Variables in the wmb array must have the same decomposition and base data size and we also need to keep track of whether each is a recordvar (has an unlimited dimension) or not.

    +
    Parameters
    + + + + + + + +
    ncidthe ncid of the open netCDF file.
    varidthe ID of the variable that these data will be written to.
    ioidthe I/O description ID as passed back by PIOc_InitDecomp().
    arraylenthe length of the array to be written. This should be at least the length of the local component of the distrubited array. (Any values beyond length of the local component will be ignored.)
    arraypointer to an array of length arraylen with the data to be written. This is a pointer to the distributed portion of the array that is on this task.
    fillvaluepointer to the fill value to be used for missing data.
    +
    +
    +
    Returns
    0 for success, non-zero error code for failure.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ PIOc_write_darray_multi()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int PIOc_write_darray_multi (int ncid,
    const int * varids,
    int ioid,
    int nvars,
    PIO_Offset arraylen,
    void * array,
    const int * frame,
    void ** fillvalue,
    bool flushtodisk 
    )
    +
    + +

    Write one or more arrays with the same IO decomposition to the file.

    +

    This funciton is similar to PIOc_write_darray(), but allows the caller to use their own data buffering (instead of using the buffering implemented in PIOc_write_darray()).

    +

    When the user calls PIOc_write_darray() one or more times, then PIO_write_darray_multi() will be called when the buffer is flushed.

    +

    Internally, this function will:

      +
    • +Find info about file, decomposition, and variable.
      • +
    • +Do a special flush for pnetcdf if needed.
      • +
    • +Allocates a buffer big enough to hold all the data in the multi-buffer, for all tasks.
      • +
    • +Calls rearrange_comp2io() to move data from compute to IO tasks.
      • +
    • +For parallel iotypes (pnetcdf and netCDF-4 parallel) call pio_write_darray_multi_nc().
      • +
    • +For serial iotypes (netcdf classic and netCDF-4 serial) call write_darray_multi_serial().
      • +
    • +For subset rearranger, create holegrid to write missing data. Then call pio_write_darray_multi_nc() or write_darray_multi_serial() to write the holegrid.
      • +
    • +Special buffer flush for pnetcdf.
      • +
    +
    Parameters
    + + + + + + + + + + +
    ncididentifies the netCDF file.
    varidsan array of length nvars containing the variable ids to be written.
    ioidthe I/O description ID as passed back by PIOc_InitDecomp().
    nvarsthe number of variables to be written with this call.
    arraylenthe length of the array to be written. This is the length of the distrubited array. That is, the length of the portion of the data that is on the processor. The same arraylen is used for all variables in the call.
    arraypointer to the data to be written. This is a pointer to an array of arrays with the distributed portion of the array that is on this processor. There are nvars arrays of data, and each array of data contains one record worth of data for that variable.
    framean array of length nvars with the frame or record dimension for each of the nvars variables in IOBUF. NULL if this iodesc contains non-record vars.
    fillvaluepointer an array (of length nvars) of pointers to the fill value to be used for missing data.
    flushtodisknon-zero to cause buffers to be flushed to disk.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ recv_and_write_data()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int recv_and_write_data (file_desc_t * file,
    const int * varids,
    const int * frame,
    io_desc_t * iodesc,
    PIO_Offset llen,
    int maxregions,
    int nvars,
    int fndims,
    size_t * tmp_start,
    size_t * tmp_count,
    void * iobuf 
    )
    +
    + +

    This is an internal function that is run only on IO proc 0.

    +

    It receives data from all the other IO tasks, and write that data to disk. This is called from write_darray_multi_serial().

    +
    Parameters
    + + + + + + + + + + + + +
    filea pointer to the open file descriptor for the file that will be written to.
    varidsan array of the variable ids to be written
    framethe record dimension for each of the nvars variables in iobuf. NULL if this iodesc contains non-record vars.
    iodescpointer to the decomposition info.
    llenlength of the iobuffer on this task for a single field.
    maxregionsmax number of blocks to be written from this iotask.
    nvarsthe number of variables to be written with this decomposition.
    fndimsthe number of dimensions in the file.
    tmp_startpointer to an already allocaed array of length fndims * maxregions. This array will get the start values for all regions.
    tmp_countpointer to an already allocaed array of length fndims * maxregions. This array will get the count values for all regions.
    iobufthe buffer to be written from this mpi task. May be null. for example we have 8 ionodes and a distributed array with global size 4, then at least 4 nodes will have a null iobuf. In practice the box rearranger trys to have at least blocksize bytes on each io task and so if the total number of bytes to write is less than blocksize*numiotasks then some iotasks will have a NULL iobuf.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +
    + +

    ◆ send_all_start_count()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int send_all_start_count (iosystem_desc_t * ios,
    io_desc_t * iodesc,
    PIO_Offset llen,
    int maxregions,
    int nvars,
    int fndims,
    size_t * tmp_start,
    size_t * tmp_count,
    void * iobuf 
    )
    +
    + +

    Internal function called by IO tasks other than IO task 0 to send their tmp_start/tmp_count arrays to IO task 0.

    +

    This is an internal function which is only called on io tasks other than IO task 0. It is called by write_darray_multi_serial().

    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    +

    ◆ write_darray_2d_double()

    @@ -192,9 +880,9 @@

    Parameters
    - - - + + + @@ -257,9 +945,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -322,9 +1010,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -387,9 +1075,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -452,9 +1140,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -517,9 +1205,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -582,9 +1270,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -647,9 +1335,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -712,9 +1400,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -777,9 +1465,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -842,9 +1530,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -907,9 +1595,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -972,9 +1660,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -1037,9 +1725,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -1102,9 +1790,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -1167,9 +1855,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -1232,9 +1920,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -1297,9 +1985,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -1362,9 +2050,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -1427,9 +2115,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -1492,9 +2180,9 @@

    Parameters

    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    - - - + + + @@ -1502,12 +2190,160 @@

    +

    ◆ write_darray_multi_par()

    + +
    +
    +
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int write_darray_multi_par (file_desc_t * file,
    int nvars,
    int fndims,
    const int * varids,
    io_desc_t * iodesc,
    int fill,
    const int * frame 
    )
    +
    + +

    Write a set of one or more aggregated arrays to output file.

    +

    This function is only used with parallel-netcdf and netcdf-4 parallel iotypes. Serial io types use write_darray_multi_serial().

    +
    Parameters
    + + + + + + + +
    filea pointer to the open file descriptor for the file that will be written to
    nvarsthe number of variables to be written with this decomposition.
    vidan array of the variable ids to be written.
    iodescpointer to the io_desc_t info.
    fillNon-zero if this write is fill data.
    framethe record dimension for each of the nvars variables in iobuf. NULL if this iodesc contains non-record vars.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    + +
    + + +

    ◆ write_darray_multi_serial()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    int write_darray_multi_serial (file_desc_t * file,
    int nvars,
    int fndims,
    const int * varids,
    io_desc_t * iodesc,
    int fill,
    const int * frame 
    )
    +
    + +

    Write a set of one or more aggregated arrays to output file in serial mode.

    +

    This function is called for netCDF classic and netCDF-4 serial iotypes. Parallel iotypes use write_darray_multi_par().

    +
    Parameters
    + + + + + + + +
    filea pointer to the open file descriptor for the file that will be written to.
    nvarsthe number of variables to be written with this decomposition.
    varidsan array of the variable ids to be written
    iodescpointer to the decomposition info.
    fillNon-zero if this write is fill data.
    framethe record dimension for each of the nvars variables in iobuf. NULL if this iodesc contains non-record vars.
    +
    +
    +
    Returns
    0 for success, error code otherwise.
    +
    Author
    Jim Edwards, Ed Hartnett
    +
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group__error__return.html b/docs/group__error__return.html index 492a3d9d2a8..bf76502684d 100644 --- a/docs/group__error__return.html +++ b/docs/group__error__return.html @@ -72,7 +72,7 @@
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/group__iodesc__generate.html b/docs/group__iodesc__generate.html index 0a52003d2e4..7b22776be23 100644 --- a/docs/group__iodesc__generate.html +++ b/docs/group__iodesc__generate.html @@ -71,7 +71,7 @@
    -Generated on Fri Apr 19 2019 14:00:18 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
    diff --git a/docs/index.html b/docs/index.html index 36f13004ce8..a9c31564426 100644 --- a/docs/index.html +++ b/docs/index.html @@ -5,7 +5,7 @@ -PIO: Parallel I/O library (PIO) +PIO: Parallel I/O Libraries (PIO) @@ -61,7 +61,7 @@
    -
    Parallel I/O library (PIO)
    +
    Parallel I/O Libraries (PIO)
    Author
    Jim Edwards
    @@ -71,9 +71,9 @@ Mariana Vertenstein
    Edward Hartnett
    -

    The Parallel I/O (PIO) library has been developed over several years to improve the ability of component models of the Community Earth System Model (CESM) to perform I/O. We believe that the interface is sufficiently general to be useful to a broader spectrum of applications. The focus of development has been on backend tools that use the NetCDF file format. PIO currently supports NetCDF and PnetCDF as backend libraries, both can be linked and used with runtime options controlling which is used for a given file.

    -

    PIO2 represents a significant rewrite of the PIO library and includes a C API as well as the original F90 API. A new decomposition strategy has been introduced which gives the user more ability to tune io communications.

    -

    This user's guide provides information about the PIO library and examples on how it can be used. Please review the ChangeLog that is included with the distribution for up-to-date release information.

    +

    The Parallel IO libraries (PIO) are high-level parallel I/O C and Fortran libraries for structured grid applications. PIO provides a netCDF-like API, and allows users to designate some subset of processors to perform IO. Computational code calls netCDF-like functions to read and write data, and PIO uses the IO processors to perform all necessary IO.

    +

    PIO also supports the creation of multiple computation components, each containing many processors, and one shared set of IO processors. The computational components can perform write operation asynchronously, and the IO processors will take care of all storage interaction.

    +

    This user's guide provides information about the PIO library and examples on how it can be used. Please watch the PIO GitHub site [https://github.com/NCAR/ParallelIO] for announcements and new releases.

    • Introduction
    • Installing PIO
      • @@ -89,7 +89,7 @@
      -Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
      diff --git a/docs/install.html b/docs/install.html index 73b130eafec..3623e527aca 100644 --- a/docs/install.html +++ b/docs/install.html @@ -66,7 +66,7 @@

      The PIO code is currently stored on github at https://github.com/PARALLELIO/ParallelIO. For questions about downloading or developing this code, consult the CIME Git Wiki or email jedwa.nosp@m.rds@.nosp@m.ucar..nosp@m.edu.

      Dependencies

      -

      PIO can use NetCDF (version 4.3.3+) and/or PnetCDF (version 1.6.1+) for I/O. Ideally, the NetCDF version should be built with MPI, which requires that it be linked with an MPI-enabled version of HDF5. Optionally, NetCDF can be built with DAP support, which introduces a dependency on CURL. Additionally, HDF5, itself, introduces dependencies on LIBZ and (optionally) SZIP.

      +

      PIO can use NetCDF (version 4.6.1+) and/or PnetCDF (version 1.9.0+) for I/O. Ideally, the NetCDF version should be built with MPI, which requires that it be linked with an MPI-enabled version of HDF5. Optionally, NetCDF can be built with DAP support, which introduces a dependency on CURL. Additionally, HDF5, itself, introduces dependencies on LIBZ and (optionally) SZIP.

      Configuring with CMake

      To configure the build, PIO requires CMake version 2.8.12+. The typical configuration with CMake can be done as follows:

      > CC=mpicc FC=mpif90 cmake [-DOPTION1=value1 -DOPTION2=value2 ...] /path/to/pio/source
@@ -110,7 +110,7 @@ 
      Examples
      -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
      diff --git a/docs/interfacepiodarray_1_1_p_i_oc__read__darray-members.html b/docs/interfacepiodarray_1_1_p_i_oc__read__darray-members.html index 6266a29a915..289c3cf551f 100644 --- a/docs/interfacepiodarray_1_1_p_i_oc__read__darray-members.html +++ b/docs/interfacepiodarray_1_1_p_i_oc__read__darray-members.html @@ -74,7 +74,7 @@
      -Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
      diff --git a/docs/interfacepiodarray_1_1_p_i_oc__read__darray.html b/docs/interfacepiodarray_1_1_p_i_oc__read__darray.html index 0fa0a50720e..25a8279435f 100644 --- a/docs/interfacepiodarray_1_1_p_i_oc__read__darray.html +++ b/docs/interfacepiodarray_1_1_p_i_oc__read__darray.html @@ -76,7 +76,7 @@
      -Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
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      -Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
      diff --git a/docs/interfacepionfput__mod_1_1_p_i_oc__put__vara__text.html b/docs/interfacepionfput__mod_1_1_p_i_oc__put__vara__text.html index db71c514d6e..d0334ff609e 100644 --- a/docs/interfacepionfput__mod_1_1_p_i_oc__put__vara__text.html +++ b/docs/interfacepionfput__mod_1_1_p_i_oc__put__vara__text.html @@ -76,7 +76,7 @@
      -Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
      diff --git a/docs/intro.html b/docs/intro.html index fc28df52ef3..e2d37fcacfc 100644 --- a/docs/intro.html +++ b/docs/intro.html @@ -65,19 +65,19 @@

      PIO is a software interface layer designed to encapsolate the complexities of parallel IO and make it easier to replace the lower level software backend. It currently supports netcdf and pnetcdf .

      -

      Basic description of how to optimize IO in a parallel environment...

      +

      Basic description of how to optimize IO in a parallel environment:

      PIO calls are collective. A MPI communicator is set in a call to PIO_init and all tasks associated with that communicator must participate in all subsequent calls to PIO. An application can make multiple calls to PIO_init in order to support multiple MPI communicators.

      -

      Begin by checking out a copy from gitHub and installing on your system as per the instructions in the Installation document. Take a look at examples of PIO usage in both complex and simple test programs in the Examples document. Finally, read through the FAQ to see if any remaining questions can be answered.

      +

      Begin by getting and unpacking the most recent release of PIO from gitHub and installing on your system as per the instructions in the Installation document. Take a look at examples of PIO usage in both complex and simple test programs in the [Examples](Examples) document. Finally, read through the FAQ to see if any remaining questions can be answered.

      Using PIO has three basic steps.

      1. Your program should call the PIO_init function, and provide the MPI communicator (and the rank within that communicator) of the calling task. This call initializes an IO system type structure that will be used in subsequent file and decomposition functions.
      2. You can open a file for reading or writing with a call to PIO_createfile or PIO_openfile. In this call you will specify the file type: pio_iotype_netcdf, pio_iotype_pnetcdf, pio_iotype_netcdf4c or pio_iotype_netcdf4p; along with the file name and optionally the netcdf mode.
        3. -
      3. Finally, you can read or write decomposed data to the output file. You must describe the mapping between the organization of data in the file and that same data in the application space. This is done in a call to PIO_initdecomp. In the simplest call to this function, a one dimensional integer array is passed from each task, the values in the array represent the offset from the beginning of the array on file. (what happens next?)
        4. +
      4. Finally, you can read or write decomposed data to the output file. You must describe the mapping between the organization of data in the file and that same data in the application space. This is done in a call to PIO_initdecomp. In the simplest call to this function, a one dimensional integer array is passed from each task, the values in the array represent the offset from the beginning of the array on file.
      -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
      diff --git a/docs/mach_walkthrough.html b/docs/mach_walkthrough.html index 59131960365..f184431f1f1 100644 --- a/docs/mach_walkthrough.html +++ b/docs/mach_walkthrough.html @@ -491,7 +491,7 @@
      -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
      diff --git a/docs/menudata.js b/docs/menudata.js index 67374ad474c..2e26328f7ce 100644 --- a/docs/menudata.js +++ b/docs/menudata.js @@ -8,18 +8,50 @@ var menudata={children:[ {text:"File List",url:"files.html"}, {text:"File Members",url:"globals.html",children:[ {text:"All",url:"globals.html",children:[ -{text:"c",url:"globals.html#index_c"}, -{text:"d",url:"globals.html#index_d"}, -{text:"e",url:"globals.html#index_e"}, -{text:"i",url:"globals.html#index_i"}, -{text:"m",url:"globals.html#index_m"}, -{text:"n",url:"globals.html#index_n"}, -{text:"p",url:"globals.html#index_p"}, -{text:"r",url:"globals.html#index_r"}, -{text:"s",url:"globals.html#index_s"}, -{text:"v",url:"globals.html#index_v"}, -{text:"x",url:"globals.html#index_x"}]}, -{text:"Functions/Subroutines",url:"globals_func.html"}, +{text:"a",url:"globals.html#index_a"}, +{text:"b",url:"globals_b.html#index_b"}, +{text:"c",url:"globals_c.html#index_c"}, +{text:"d",url:"globals_d.html#index_d"}, +{text:"e",url:"globals_e.html#index_e"}, +{text:"f",url:"globals_f.html#index_f"}, +{text:"g",url:"globals_g.html#index_g"}, +{text:"i",url:"globals_i.html#index_i"}, +{text:"l",url:"globals_l.html#index_l"}, +{text:"m",url:"globals_m.html#index_m"}, +{text:"n",url:"globals_n.html#index_n"}, +{text:"o",url:"globals_o.html#index_o"}, +{text:"p",url:"globals_p.html#index_p"}, +{text:"r",url:"globals_r.html#index_r"}, +{text:"s",url:"globals_s.html#index_s"}, +{text:"v",url:"globals_v.html#index_v"}, +{text:"w",url:"globals_w.html#index_w"}, +{text:"x",url:"globals_x.html#index_x"}]}, +{text:"Functions/Subroutines",url:"globals_func.html",children:[ +{text:"a",url:"globals_func.html#index_a"}, +{text:"b",url:"globals_func_b.html#index_b"}, +{text:"c",url:"globals_func_c.html#index_c"}, +{text:"d",url:"globals_func_d.html#index_d"}, +{text:"e",url:"globals_func_e.html#index_e"}, +{text:"f",url:"globals_func_f.html#index_f"}, +{text:"g",url:"globals_func_g.html#index_g"}, +{text:"i",url:"globals_func_i.html#index_i"}, +{text:"l",url:"globals_func_l.html#index_l"}, +{text:"m",url:"globals_func_m.html#index_m"}, +{text:"o",url:"globals_func_o.html#index_o"}, +{text:"p",url:"globals_func_p.html#index_p"}, +{text:"r",url:"globals_func_r.html#index_r"}, +{text:"s",url:"globals_func_s.html#index_s"}, +{text:"w",url:"globals_func_w.html#index_w"}]}, {text:"Variables",url:"globals_vars.html"}, {text:"Typedefs",url:"globals_type.html"}, -{text:"Macros",url:"globals_defs.html"}]}]}]} +{text:"Enumerations",url:"globals_enum.html"}, +{text:"Enumerator",url:"globals_eval.html"}, +{text:"Macros",url:"globals_defs.html",children:[ +{text:"d",url:"globals_defs.html#index_d"}, +{text:"e",url:"globals_defs.html#index_e"}, +{text:"m",url:"globals_defs.html#index_m"}, +{text:"n",url:"globals_defs.html#index_n"}, +{text:"p",url:"globals_defs.html#index_p"}, +{text:"s",url:"globals_defs.html#index_s"}, +{text:"v",url:"globals_defs.html#index_v"}, +{text:"x",url:"globals_defs.html#index_x"}]}]}]}]} diff --git a/docs/modules.html b/docs/modules.html index c43ce20211d..7a88165089d 100644 --- a/docs/modules.html +++ b/docs/modules.html @@ -129,7 +129,7 @@
      -Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
      diff --git a/docs/pages.html b/docs/pages.html index 5e3c8e6746f..8aa37fb361d 100644 --- a/docs/pages.html +++ b/docs/pages.html @@ -84,7 +84,7 @@
      -Generated on Fri Apr 19 2019 14:00:19 for PIO by   +Generated on Sat May 18 2019 06:38:19 for PIO by   doxygen 1.8.13
      diff --git a/docs/pio_8_f90.html b/docs/pio_8_f90.html index 58c43a370d2..2d1fd8d6b6f 100644 --- a/docs/pio_8_f90.html +++ b/docs/pio_8_f90.html @@ -77,7 +77,7 @@

      Functions/Subroutines

      -subroutine pio::pio_set_blocksize (blocksize) +subroutine pio::pio_set_blocksize (blocksize)  Set the target blocksize for the box rearranger.
        logical function pio::pio_iam_iotask (iosystem) @@ -166,7 +166,7 @@

      -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
      diff --git a/docs/pio__kinds_8_f90.html b/docs/pio__kinds_8_f90.html index a482707cd6a..f85ca139138 100644 --- a/docs/pio__kinds_8_f90.html +++ b/docs/pio__kinds_8_f90.html @@ -106,7 +106,7 @@
      -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
      diff --git a/docs/pio__nc4_8c.html b/docs/pio__nc4_8c.html index 765df994aad..3d7089ddcfe 100644 --- a/docs/pio__nc4_8c.html +++ b/docs/pio__nc4_8c.html @@ -74,12 +74,18 @@

      Functions to wrap netCDF-4 functions for PIO. More...

      #include <config.h>
      -#include <pio.h>
      -#include <pio_internal.h>
      +#include <pio.h>
      +#include <pio_internal.h>
      Include dependency graph for pio_nc4.c:
      + + + + + +
      - + - + @@ -102,16 +108,16 @@ - + - + - + - +

      @@ -90,10 +96,10 @@

      int PIOc_inq_var_deflate (int ncid, int varid, int *shufflep, int *deflatep, int *deflate_levelp)
       This function only applies to netCDF-4 files. More...
       
      int PIOc_def_var_chunking (int ncid, int varid, int storage, const PIO_Offset *chunksizesp)
      int PIOc_def_var_chunking (int ncid, int varid, int storage, const PIO_Offset *chunksizesp)
       Set chunksizes for a variable. More...
       
      int PIOc_inq_var_chunking (int ncid, int varid, int *storagep, PIO_Offset *chunksizesp)
      int PIOc_inq_var_chunking (int ncid, int varid, int *storagep, PIO_Offset *chunksizesp)
       Inquire about chunksizes for a variable. More...
       
      int PIOc_def_var_endian (int ncid, int varid, int endian)
      int PIOc_inq_var_endian (int ncid, int varid, int *endianp)
       Inquire about chunksizes for a variable. More...
       
      int PIOc_set_chunk_cache (int iosysid, int iotype, PIO_Offset size, PIO_Offset nelems, float preemption)
      int PIOc_set_chunk_cache (int iosysid, int iotype, PIO_Offset size, PIO_Offset nelems, float preemption)
       Set chunk cache netCDF files to be opened/created. More...
       
      int PIOc_get_chunk_cache (int iosysid, int iotype, PIO_Offset *sizep, PIO_Offset *nelemsp, float *preemptionp)
      int PIOc_get_chunk_cache (int iosysid, int iotype, PIO_Offset *sizep, PIO_Offset *nelemsp, float *preemptionp)
       Get current file chunk cache settings from HDF5. More...
       
      int PIOc_set_var_chunk_cache (int ncid, int varid, PIO_Offset size, PIO_Offset nelems, float preemption)
      int PIOc_set_var_chunk_cache (int ncid, int varid, PIO_Offset size, PIO_Offset nelems, float preemption)
       Set chunksizes for a variable. More...
       
      int PIOc_get_var_chunk_cache (int ncid, int varid, PIO_Offset *sizep, PIO_Offset *nelemsp, float *preemptionp)
      int PIOc_get_var_chunk_cache (int ncid, int varid, PIO_Offset *sizep, PIO_Offset *nelemsp, float *preemptionp)
       Get the variable chunk cache settings. More...
       
      @@ -140,13 +146,13 @@

      - PIO_Offset *  + PIO_Offset *  sizep, - PIO_Offset *  + PIO_Offset *  nelemsp, @@ -209,7 +215,7 @@

      - PIO_Offset *  + PIO_Offset *  chunksizesp  @@ -228,7 +234,7 @@

      ncidthe ncid of the open file. varidthe ID of the variable to set chunksizes for. storageppointer to int which will be set to either NC_CONTIGUOUS or NC_CHUNKED. - chunksizeppointer to memory where chunksizes will be set. There are the same number of chunksizes as there are dimensions. + chunksizesppointer to memory where chunksizes will be set. There are the same number of chunksizes as there are dimensions.

    @@ -351,7 +357,7 @@

    -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/pio__nc4_8c__incl.map b/docs/pio__nc4_8c__incl.map index ddeb6879929..663d7222a42 100644 --- a/docs/pio__nc4_8c__incl.map +++ b/docs/pio__nc4_8c__incl.map @@ -1,2 +1,6 @@ + + + + diff --git a/docs/pio__nc4_8c__incl.md5 b/docs/pio__nc4_8c__incl.md5 index 5935c193bc4..345b0d825ef 100644 --- a/docs/pio__nc4_8c__incl.md5 +++ b/docs/pio__nc4_8c__incl.md5 @@ -1 +1 @@ -ec696b9ac8039c3d7a0357ce9f21cb85 \ No newline at end of file +184cebe037a31dca67356e011e1bc459 \ No newline at end of file diff --git a/docs/pio__nc4_8c__incl.png b/docs/pio__nc4_8c__incl.png index 47a80d987a2..34fe9e144bb 100644 Binary files a/docs/pio__nc4_8c__incl.png and b/docs/pio__nc4_8c__incl.png differ diff --git a/docs/pio__support_8_f90.html b/docs/pio__support_8_f90.html index 61560e60470..ccdee1cfe8e 100644 --- a/docs/pio__support_8_f90.html +++ b/docs/pio__support_8_f90.html @@ -395,7 +395,7 @@

    -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/pio__types_8_f90.html b/docs/pio__types_8_f90.html index 3366e7c6f38..86b74c5b362 100644 --- a/docs/pio__types_8_f90.html +++ b/docs/pio__types_8_f90.html @@ -197,7 +197,7 @@
    -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/piodarray_8_f90.html b/docs/piodarray_8_f90.html index 4c04bd1af46..a3d7e043a1c 100644 --- a/docs/piodarray_8_f90.html +++ b/docs/piodarray_8_f90.html @@ -253,7 +253,7 @@
    -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/piolib__mod_8_f90.html b/docs/piolib__mod_8_f90.html index 5df413bb9c3..ebeaf5eaea9 100644 --- a/docs/piolib__mod_8_f90.html +++ b/docs/piolib__mod_8_f90.html @@ -240,7 +240,7 @@

    Parameters
    - +
    File
    FileFile descriptor structure. This structure holds information associated with each open file
    @@ -351,7 +351,7 @@

    -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/pionfatt__mod_8_f90.html b/docs/pionfatt__mod_8_f90.html index 5afcd728afa..3d2f9272658 100644 --- a/docs/pionfatt__mod_8_f90.html +++ b/docs/pionfatt__mod_8_f90.html @@ -254,7 +254,7 @@
    -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/pionfget__mod_8_f90.html b/docs/pionfget__mod_8_f90.html index 1339b1fd96f..777f1163b83 100644 --- a/docs/pionfget__mod_8_f90.html +++ b/docs/pionfget__mod_8_f90.html @@ -254,7 +254,7 @@
    -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/docs/pionfput__mod_8_f90.html b/docs/pionfput__mod_8_f90.html index b69f5d4c4a5..9bdfee1aff2 100644 --- a/docs/pionfput__mod_8_f90.html +++ b/docs/pionfput__mod_8_f90.html @@ -389,7 +389,7 @@
    -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
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    PIO2 Unit Tests

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    -Generated on Fri Apr 19 2019 14:00:17 for PIO by   +Generated on Sat May 18 2019 06:38:18 for PIO by   doxygen 1.8.13
    diff --git a/src/clib/pio.h b/src/clib/pio.h index 83ed8f7feae..37b9a3ab741 100644 --- a/src/clib/pio.h +++ b/src/clib/pio.h @@ -41,6 +41,7 @@ /** PIO_OFFSET is defined as MPI_Offset, which is defined in * pio_internal.h as long long. This is what is used throughout the C * code. */ + #define PIO_Offset MPI_Offset /** The maximum number of variables allowed in a netCDF file. */ @@ -75,6 +76,7 @@ #define DECOMP_ORDER_ATT_NAME "array_order" /** Name of backtrace attribute in decomposition file. */ + #define DECOMP_BACKTRACE_ATT_NAME "backtrace" /** Name for the dim dim in decomp file. */ @@ -774,7 +776,7 @@ enum PIO_ERROR_HANDLERS /** Variable dimensions do not match in a multivar call. */ #define PIO_EVARDIMMISMATCH (-501) -/** Request NULL. */ +/** Request null. */ #define PIO_REQ_NULL (NC_REQ_NULL-1) #if defined(__cplusplus)