diff --git a/lib/instrumentation/reporting.spec.ts b/lib/instrumentation/reporting.spec.ts
index 8705ac618bae93..494e4fd203b0d5 100644
--- a/lib/instrumentation/reporting.spec.ts
+++ b/lib/instrumentation/reporting.spec.ts
@@ -9,11 +9,13 @@ import {
   addBranchStats,
   addExtractionStats,
   exportStats,
+  finalizeReport,
   getReport,
 } from './reporting';
 
 jest.mock('../util/fs', () => mockDeep());
 jest.mock('../util/s3', () => mockDeep());
+jest.mock('../logger', () => mockDeep());
 
 describe('instrumentation/reporting', () => {
   const branchInformation: Partial<BranchCache>[] = [
@@ -52,8 +54,10 @@ describe('instrumentation/reporting', () => {
   };
 
   const expectedReport = {
+    problems: [],
     repositories: {
       'myOrg/myRepo': {
+        problems: [],
         branches: branchInformation,
         packageFiles,
       },
@@ -70,6 +74,7 @@ describe('instrumentation/reporting', () => {
     });
 
     expect(getReport()).toEqual({
+      problems: [],
       repositories: {},
     });
   });
@@ -174,4 +179,49 @@ describe('instrumentation/reporting', () => {
     fs.writeSystemFile.mockRejectedValue(null);
     await expect(exportStats(config)).toResolve();
   });
+
+  it('should add problems to report', () => {
+    const config: RenovateConfig = {
+      repository: 'myOrg/myRepo',
+      reportType: 'logging',
+    };
+    const expectedReport = {
+      problems: [
+        {
+          level: 30,
+          msg: 'a root problem',
+        },
+      ],
+      repositories: {
+        'myOrg/myRepo': {
+          problems: [
+            {
+              level: 30,
+              msg: 'a repo problem',
+            },
+          ],
+          branches: branchInformation,
+          packageFiles,
+        },
+      },
+    };
+
+    addBranchStats(config, branchInformation);
+    addExtractionStats(config, { branchList: [], branches: [], packageFiles });
+
+    logger.getProblems.mockReturnValue([
+      {
+        repository: 'myOrg/myRepo',
+        level: 30,
+        msg: 'a repo problem',
+      },
+      {
+        level: 30,
+        msg: 'a root problem',
+      },
+    ]);
+    finalizeReport();
+
+    expect(getReport()).toEqual(expectedReport);
+  });
 });
diff --git a/lib/instrumentation/reporting.ts b/lib/instrumentation/reporting.ts
index 2167212ffba272..8b422f3d3d9b41 100644
--- a/lib/instrumentation/reporting.ts
+++ b/lib/instrumentation/reporting.ts
@@ -1,7 +1,7 @@
 import { PutObjectCommand, PutObjectCommandInput } from '@aws-sdk/client-s3';
 import is from '@sindresorhus/is';
 import type { RenovateConfig } from '../config/types';
-import { logger } from '../logger';
+import { getProblems, logger } from '../logger';
 import type { BranchCache } from '../util/cache/repository/types';
 import { writeSystemFile } from '../util/fs';
 import { getS3Client, parseS3Url } from '../util/s3';
@@ -9,6 +9,7 @@ import type { ExtractResult } from '../workers/repository/process/extract-update
 import type { Report } from './types';
 
 const report: Report = {
+  problems: [],
   repositories: {},
 };
 
@@ -37,6 +38,22 @@ export function addExtractionStats(
     extractResult.packageFiles;
 }
 
+export function finalizeReport(): void {
+  const allProblems = structuredClone(getProblems());
+  for (const problem of allProblems) {
+    const repository = problem.repository;
+    delete problem.repository;
+
+    // if the problem can be connected to a repository add it their else add to the root list
+    if (repository) {
+      coerceRepo(repository);
+      report.repositories[repository].problems.push(problem);
+    } else {
+      report.problems.push(problem);
+    }
+  }
+}
+
 export async function exportStats(config: RenovateConfig): Promise<void> {
   try {
     if (is.nullOrUndefined(config.reportType)) {
@@ -91,6 +108,7 @@ function coerceRepo(repository: string): void {
   }
 
   report.repositories[repository] = {
+    problems: [],
     branches: [],
     packageFiles: {},
   };
diff --git a/lib/instrumentation/types.ts b/lib/instrumentation/types.ts
index aa29b4ebdbf9b4..d4e86c1c7ea6cc 100644
--- a/lib/instrumentation/types.ts
+++ b/lib/instrumentation/types.ts
@@ -1,4 +1,5 @@
 import type { Attributes, SpanKind } from '@opentelemetry/api';
+import type { BunyanRecord } from '../logger/types';
 import type { PackageFile } from '../modules/manager/types';
 import type { BranchCache } from '../util/cache/repository/types';
 
@@ -28,10 +29,12 @@ export interface SpanParameters {
 }
 
 export interface Report {
+  problems: BunyanRecord[];
   repositories: Record<string, RepoReport>;
 }
 
 interface RepoReport {
+  problems: BunyanRecord[];
   branches: Partial<BranchCache>[];
   packageFiles: Record<string, PackageFile[]>;
 }
diff --git a/lib/workers/global/index.spec.ts b/lib/workers/global/index.spec.ts
index d7085312642119..e5404417a76b2e 100644
--- a/lib/workers/global/index.spec.ts
+++ b/lib/workers/global/index.spec.ts
@@ -40,7 +40,7 @@ const initPlatform = jest.spyOn(platform, 'initPlatform');
 
 describe('workers/global/index', () => {
   beforeEach(() => {
-    logger.getProblems.mockImplementationOnce(() => []);
+    logger.getProblems.mockImplementation(() => []);
     initPlatform.mockImplementation((input) => Promise.resolve(input));
     delete process.env.AWS_SECRET_ACCESS_KEY;
     delete process.env.AWS_SESSION_TOKEN;
@@ -149,7 +149,7 @@ describe('workers/global/index', () => {
       repositories: [],
     });
     logger.getProblems.mockReset();
-    logger.getProblems.mockImplementationOnce(() => [
+    logger.getProblems.mockImplementation(() => [
       {
         level: ERROR,
         msg: 'meh',
@@ -166,7 +166,7 @@ describe('workers/global/index', () => {
       repositories: [],
     });
     logger.getProblems.mockReset();
-    logger.getProblems.mockImplementationOnce(() => [
+    logger.getProblems.mockImplementation(() => [
       {
         level: WARN,
         msg: 'meh',
diff --git a/lib/workers/global/index.ts b/lib/workers/global/index.ts
index e9b4f5abc6ecd2..1a2e3745d46b0f 100644
--- a/lib/workers/global/index.ts
+++ b/lib/workers/global/index.ts
@@ -16,7 +16,7 @@ import type {
 import { CONFIG_PRESETS_INVALID } from '../../constants/error-messages';
 import { pkg } from '../../expose.cjs';
 import { instrument } from '../../instrumentation';
-import { exportStats } from '../../instrumentation/reporting';
+import { exportStats, finalizeReport } from '../../instrumentation/reporting';
 import { getProblems, logger, setMeta } from '../../logger';
 import { setGlobalLogLevelRemaps } from '../../logger/remap';
 import * as hostRules from '../../util/host-rules';
@@ -212,6 +212,7 @@ export async function start(): Promise<number> {
       );
     }
 
+    finalizeReport();
     await exportStats(config);
   } catch (err) /* istanbul ignore next */ {
     if (err.message.startsWith('Init: ')) {